efna5b (LOC106585191)


Basic Information

Item Value
gene id efna5b
gene name LOC106585191
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 40975379 ~ 41084448 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980124.1
AACCCACTTTCTGGCTGCACCGAGCTGCCTTTGCTCTCACCGTCCCTTTAGTCTCGTCCCGTTGAATCTAAACATCAGGGGGAAAGAAGCACATGAATAAAGCGtgttttattttttctctccTATGCTTATATATGAAGAGGATGCAGTGGAATGCTGCCATTTGGGCTCCGGGTAAAGAAGCGTCTCTACTGTCACCCAACAGTAGCGCATGAGAGAGGCTCGAGGACGGACTCCTCCCCACCCCCTTGACACTATCAAGACAGCACTGAGAAAGGATAGCTGCCTTTTTTTCGGCCAGTCTGCGAACGGAGCAAAGACAGCGTTACGAAAAAAGGACTAGACTACAACCGGGGGTTGCCTATATGGCTTTCCAAAGTTCCATCTCTGAAAACGTGGACATTGAAGGACACCAGCTATAGGGGGACATTGGACACCAGCTATAGGGGGACATTGGACACATATGGCTCGTTTTCCTTACTCAATCTTGACACCGATCCAGCTCAGCGCATGACCGTACAGAGACGGCTGTAGTCTGTTAGAGGGGACTTCTAACAACTGTTTTATCAATATTTGTTTGATATCCCTATATGTATATTTGTGTGAACATATTTTGTCTGGCCTAGGAGTAATTTTTACGCATACTGGAACCGTCAAAAACGGATGTCCCATTCACATATCATACAACTGAACCAGACACTGAACCTGAAGAGAGAAGCACTAACCACAGTGACACTCGCATTTGATAACTTCACCTGCTACTGTCGTCAAATTAATTCCAATTGACCAACGAGGCGTCATCTCTGTTGCAGGTTGCGCTATCAAAGCCTCTCGCACCTTGGGGTAGGAGACAGCGATTTTCTGTTATTGAATTGTCTTGCCTATTTCTGCCATTCATAAACTGCGACAGAGGACAGAAAAGGCACACAAATGTAAACAAGACAAAGCATCTCTCCTTCTGAAGTGTACCCTAAACTGACTGATCCCGCAGTCACCCCGCATCGAAGAGGAATACGTGCCGAACTTTGCTGTAGTGATGCTGCAAGTGGAGATGGTGCTATTCGTCTTTCTGGTGCTATGGATGTGTGTATTCAGCCAGGAACCCAGCTCCAAGGTGGTGGCCGACCGCTATGCCGTCTTCTGGAACCGAACCAACCCCAGGTTCCACCGTGGAGACTACCACATTGACGTGTGTATAAACGACTACCTGGACGTGTTCTGTCCCCACTATGAAGACACGGTGCCGGAGGAGAGGACGGAGCGCTACGTCCTCTACATGGTCAACTACGACGGCTACAGTACGTGTGACCACACCGCCAAGGGCTTCAAACGCTGGGAGTGTAACAGGCCTCACTCCCCCAACGGGCCGCTCAAGTTCTCCGAAAAGTTCCAGCTCTTCACCCCCTTCTCTCTGGGCTTCGAGTTCAGACCAGGCAGAGAGTACTACTACATCTCCTCCACCATCGCTGAGAACGGAAGAAGAACATGCCTGAAACTCAAAGTTTTCGTCCGACCATCAAATGATACGAGTCACGAGTCGGCCGAACCTTCCAGGAGCGACGGCACAAATGCAGCGTCACACTCGCGGATAGCCAGACCACTTCTGGCTGCACTGCTAATCTGCCTAGCAACACTCTTCACCTTATAGCGCCTCCCCCTGTCCTGGACGGGAATTATACCCTGTGAGGCCTGAATCTGCCCAGTGCTGAGGCTGGGGCTAGGGTGGGagaattgaggggggg
>XM_036980123.1
TTTCTGGCTGCACCGAGCTGCCTTTGCTCTCACCGTCCCTTTAGTCTCGTCCCGTTGAATCTAAACATCAGGGGGAAAGAAGCACATGAATAAAGCGtgttttattttttctctccTATGCTTATATATGAAGAGGATGCAGTGGAATGCTGCCATTTGGGCTCCGGGTAAAGAAGCGTCTCTACTGTCACCCAACAGTAGCGCATGAGAGAGGCTCGAGGACGGACTCCTCCCCACCCCCTTGACACTATCAAGACAGCACTGAGAAAGGATAGCTGCCTTTTTTTCGGCCAGTCTGCGAACGGAGCAAAGACAGCGTTACGAAAAAAGGACTAGACTACAACCGGGGGTTGCCTATATGGCTTTCCAAAGTTCCATCTCTGAAAACGTGGACATTGAAGGACACCAGCTATAGGGGGACATTGGACACCAGCTATAGGGGGACATTGGACACATATGGCTCGTTTTCCTTACTCAATCTTGACACCGATCCAGCTCAGCGCATGACCGTACAGAGACGGCTGTAGTCTGTTAGAGGGGACTTCTAACAACTGTTTTATCAATATTTGTTTGATATCCCTATATGTATATTTGTGTGAACATATTTTGTCTGGCCTAGGAGTAATTTTTACGCATACTGGAACCGTCAAAAACGGATGTCCCATTCACATATCATACAACTGAACCAGACACTGAACCTGAAGAGAGAAGCACTAACCACAGTGACACTCGCATTTGATAACTTCACCTGCTACTGTCGTCAAATTAATTCCAATTGACCAACGAGGCGTCATCTCTGTTGCAGGTTGCGCTATCAAAGCCTCTCGCACCTTGGGGTAGGAGACAGCGATTTTCTGTTATTGAATTGTCTTGCCTATTTCTGCCATTCATAAACTGCGACAGAGGACAGAAAAGGCACACAAATGTAAACAAGACAAAGCATCTCTCCTTCTGAAGTGTACCCTAAACTGACTGATCCCGCAGTCACCCCGCATCGAAGAGGAATACGTGCCGAACTTTGCTGTAGTGATGCTGCAAGTGGAGATGGTGCTATTCGTCTTTCTGGTGCTATGGATGTGTGTATTCAGCCAGGAACCCAGCTCCAAGGTGGTGGCCGACCGCTATGCCGTCTTCTGGAACCGAACCAACCCCAGGTTCCACCGTGGAGACTACCACATTGACGTGTGTATAAACGACTACCTGGACGTGTTCTGTCCCCACTATGAAGACACGGTGCCGGAGGAGAGGACGGAGCGCTACGTCCTCTACATGGTCAACTACGACGGCTACAGTACGTGTGACCACACCGCCAAGGGCTTCAAACGCTGGGAGTGTAACAGGCCTCACTCCCCCAACGGGCCGCTCAAGTTCTCCGAAAAGTTCCAGCTCTTCACCCCCTTCTCTCTGGGCTTCGAGTTCAGACCAGGCAGAGAGTACTACTACATCTCCTCCACCATCGCTGAGAACGGAAGAAGAACATGCCTGAAACTCAAAGTTTTCGTCCGACCATCAAACAACTGCGTGAAAACTATAGGCGTACATGACCGTGTTTTTGACGTTAACGACAAAGTAGACAATTCATTAGAACCCCGAGATGATACGAGTCACGAGTCGGCCGAACCTTCCAGGAGCGACGGCACAAATGCAGCGTCACACTCGCGGATAGCCAGACCACTTCTGGCTGCACTGCTAATCTGCCTAGCAACACTCTTCACCTTATAGCGCCTCCCCCTGTCCTGGACGGGAATTATACCCTGTGAGGCCTGAATCTGCCCAGTGCTGAGGCTGGGGCTAGGGTGGGagaattgaggggggg

Function

NR:

description
ephrin-A5

GO:

id name namespace
GO:0007509 mesoderm migration involved in gastrulation biological_process
GO:0001756 somitogenesis biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K05462 EFNA; ephrin-A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980124.1 False 1742 mRNA 0.50 4 40975379 41084448
XM_036980123.1 True 1816 mRNA 0.50 5 40975386 41084448

Neighbor

gene id symbol gene type direction distance location
fbxl17 fbxl17 coding upstream 88952 40568637 ~ 40886427 (+)
slc35d2 LOC106585185 coding upstream 441535 40527838 ~ 40533844 (+)
ccl27a ccl28 coding upstream 451097 40520974 ~ 40524282 (+)
avp neu4 coding upstream 455840 40517591 ~ 40519539 (+)
LOC110525959 LOC106585184 coding upstream 469267 40500657 ~ 40506112 (+)
LOC110525969 NA coding downstream 98400 41182848 ~ 41188172 (+)
LOC110525974 selenop coding downstream 373839 41458287 ~ 41461918 (+)
LOC118964869 NA coding downstream 431291 41515545 ~ 41522572 (+)
oxct1a LOC106580620 coding downstream 486556 41571004 ~ 41677673 (+)
plcxd3 plcxd3 coding downstream 594325 41678773 ~ 41700121 (+)
G506531 NA non-coding upstream 26387 40948675 ~ 40948992 (+)
G506471 NA non-coding upstream 35306 40861090 ~ 40940073 (+)
G506511 NA non-coding upstream 49692 40917989 ~ 40925687 (+)
G506417 NA non-coding upstream 209338 40764489 ~ 40766041 (+)
G506382 NA non-coding upstream 274990 40700060 ~ 40700389 (+)
G506526 NA non-coding downstream 43 41084491 ~ 41086322 (+)
G506524 NA non-coding downstream 1969 41086417 ~ 41088951 (+)
G506602 NA non-coding downstream 5451 41089899 ~ 41090182 (+)
G506622 NA non-coding downstream 34616 41119064 ~ 41119403 (+)
G506627 NA non-coding downstream 39834 41124282 ~ 41124489 (+)
G506285 NA other upstream 408950 40566067 ~ 40566429 (+)
G506281 LOC106585187 other upstream 427866 40544863 ~ 40547513 (+)
LOC110525949 LOC106585178 other upstream 716329 40256994 ~ 40259050 (+)
G506095 atp5a1 other upstream 771493 40196800 ~ 40203886 (+)
G507768 LOC105030512 other downstream 385103 41469551 ~ 41471408 (+)
G508559 dph7 other downstream 1044777 42129225 ~ 42131940 (+)
G509160 NA other downstream 1482657 42567105 ~ 42570169 (+)
G510416 NA other downstream 2573020 43657468 ~ 43658493 (+)
G512192 LOC106584908 other downstream 4099991 45184439 ~ 45185869 (+)

Expression


Co-expression Network