LOC110525974 (selenop)


Basic Information

Item Value
gene id LOC110525974
gene name selenop
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 41458287 ~ 41461918 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606522.2
TGTCCTCCTTTCGGGCAGGCAGGAAAACAACACTGCTAGCATAAAAGGGAGAGCAGAGCGAGTTGAGGGTTGTTGTTCTTCCAGAAGCTACTGCTAGACCGAGCTGAGCCGACCGAGGGACTTTTTACTAGACACAGATCAAGCCTGCGGTGCAGCACCGTGATGTGGGTGGGACTAAGCCTGCTCCTGGCTCTCTGCCTGCTCCCTGGGGGCGGAAcagagagtgagggggaagggACCCGCTGTAAGCAGCCACCTGGTTGGAGTATTGGGGAGGTGGAGCCTATGAAGGAGGTCATGGGCCAGGTCACGGTGGTGGCCCTACTCCAGGCCAGTTGATTGTTCTGCTTGGTGCAGGCATCCTTATTGGATGGGCTGCGCCTGAAGCTGGAGGGTCAGGGTCTGGAGAATGTGACCTATATGGTGGTGAACCACCAGGGGGAGCAGGCCCAGCGCCTACACACCCTGCTGAGGCAGAAACTGTCTGAGAACATCACGCTATACAAACAACAGCCCAAACAGGAAGATgtgtggcagaccctggccggaGAGAAGGATGACTTCCTCATCTATGACAGaTGTGGTCGTCTGACCTACCATATCTCCCTGCCCTACTCCATCCTGGGTACTCCCTATGTAGAGAACGCCATCAAGGAGACCTACTGCACACGCGTCTGTGGGGACTGCACgtatgagAGCAAGGAGATCCCAGCAGAGTGCAACAGGACAGTAGAGGCAAAgcctgagggagaggagaagccAGTCACCGGAAGGGAGACAACTCATGGTGGACACGGCCATCATCACCATGGTCACGGTCACAATGGCAACCGCCATGGTCACAATGGCAACCGCCATGGTCACGATCACCATggtgagagggggatggggcgCGGTCACGGTCGTGATCATGGGGCCGAGCAGCAGCACCAACATGACACTGAGGGGCTCCAACACGGCCAGGCCCATGGCCAGTTGCACGTTGGTCAGGAGCATATGGGTCAGCAGGCAGTGCAACTGGGCCAGATGCCCCAGGAAGGGCAGCGAGGCCATATTATGCAGAATCCCTGAGTGAAGGGGAAGTCCAGGTGAAAGGCGGAGCACAGCTGACAGTGGAAGGAGGGGTCTGATCTAAGTCCCTCTTCCAAGGCCAGCTGATGCTGACACTGACGGAGGCTGTTTGGCGATGGGGTGAGCAACGAGCCAATCGGGCTCTGACACTGTGATGAGGCGCTGCCCGCCTCCTGACAGTGACAGGGACTGATAGGCCTCAGGGAGACCTGACAGTGACGCTCGTCCCTCGCTGACTGACAGCAGCCTCAGCCAGTCATGTGAGCCTGACCCCTGGGTGTTGAGAGCTGAGGGTGAGGGCTGCTGTAAGCAGGGCCATGGCTCTGTGACAGTTACCTTGCTATACCTTATAGGCCTCAGATTAACATCTGTGAGACAAACACCCGGGGCGAACCGCTCTTATAACATCTTACCAACTAGTATTACCCTGGGACCGTGAAGCCACCCCtgacagggagagatgggaggacacACATTGGGTGTGGTAGGTGAATGCCAAGCCTAAACCCATTACGATATGGGGGAAAGGATTGCATTTGAGATGTGACCATAGTGATGGCAAGGTGGGTGTCCTCCACCATCTCTGTCAGTGCGTTGGTGTCACCCTCCCAGGAGTGTATGGGGTGATTATGTTAACGTTTCTCCTGCTCTGTTTTGCTCCCTCCATCCACAGTGAAGGCAGGCGCAGAAACTACGCTCTAGTGGCGTCTGTCTGATGTCCGGCTGGGGAGAGGGGAACGGGAGGGACTTATAATATGACCACCCCCTAAAGTTCAAAATATCGAGAGCTTTGGAAGGAGTATGTAGTAGTAGTTGCCTATGCTGAACAAACTGGCATGATGGCTGGGAGAGATAGACCTGAACCAAAGTTGTTATACTCAGTGTTAGCAAAACCAATTTGGTCCAAATACATTATTGatagttcagattttttttattaggCCTCCAAAAAAATTGGGATCTCACTAACATTTTACTTTTGCAATTTAATTAACTCTCAGGTGTTTTGGAGCAGTAGTGTGTTATGTAGATAAAGCTTTCAAACGTCAGTATCCATTGCTTACAGCTGTGAGGATGTGTGTTTAGTTAGTCACTGAGTTATTTTAGTTTGGCAATATTGCACATATGTATAATGCACTCTTTGTGAACTAGCAAAACAGAGAACTGTTTTCAACTAACAAAATAGTGAACACTTTTTTTCGACTAACAAATGATCGGGAACACTTTTTAACTAGCAAAAGAAACCGTCTAGAATGAGAGGTGGGTAAACAGAAAAGATTGAACGATTGTTTGAATCCATTCTGTACTTAATGAAGGGCTCTAGGGGAAGACAACTGTCACCTAGAACACCTGATGCTTTGTACAGAACACGTTCATTCTGACTGTGGACTGTTAGGTGGTGTAGCATGTAAGAAATGCCGAATAAAGATGGTTGATGCACTCATA
>XM_036980132.1
GCAGGAAAACAACACTGCTAGCATAAAAGGGAGAGCAGAGCGAGTTGAGGGTTGTTGTTCTTCCAGAAGCTACTGCTAGACCGAGCTGAGCCGACCGAGGGACTTTTTACTAGACACAGATCAAGCCTGCGGTGCAGCACCGTGATGTGGGTGGGACTAAGCCTGCTCCTGGCTCTCTGCCTGCTCCCTGGGGGCGGAAcagagagtgagggggaagggACCCGCTGTAAGCAGCCACCTGGTTGGAGTATTGGGGAGGTGGAGCCTATGAAGGAGGTCATGGGCCAGGTCACGGTGGTGGCCCTACTCCAGGCCAGTTGATTGTTCTGCTTGGTGCAGGCATCCTTATTGGATGGGCTGCGCCTGAAGCTGGAGGGTCAGGGTCTGGAGAATGTGACCTATATGGTGGTGAACCACCAGGGGGAGCAGGCCCAGCGCCTACACACCCTGCTGAGGCAGAAACTGTCTGAGAACATCACGCTATACAAACAACAGCCCAAACAGGAAGATgtgtggcagaccctggccggaGAGAAGGATGACTTCCTCATCTATGACAGaTGTGGTCGTCTGACCTACCATATCTCCCTGCCCTACTCCATCCTGGGTACTCCCTATGTAGAGAACGCCATCAAGGAGACCTACTGCACACGCGTCTGTGGGGACTGCACgtatgagAGCAAGGAGATCCCAGCAGAGTGCAACAGGACAGTAGAGGCAAAgcctgagggagaggagaagccAGTCACCGGAAGGGAGACAACTCATGGTGGACACGGCCATCATCACCATGGTCACGGTCACAATGGCAACCGCCATGGTCACAATGGCAACCGCCATGGTCACGATCACCATggtgagagggggatggggcgCGGTCACGGTCGTGATCATGGGGCCGAGCAGCAGCACCAACATGACACTGAGGGGCTCCAACACGGCCAGGCCCATGGCCAGTTGCACGTTGGTCAGGAGCATATGGGTCAGCAGGCAGTGCAACTGGGCCAGATGCCCCAGGAAGGGCAGCGAGGCCATATTATGCAGAATCCCTGAGTGAAGGGGAAGTCCAGGTGAAAGGCGGAGCACAGCTGACAGTGGAAGGAGGGGTCTGATCTAAGTCCCTCTTCCAAGGCCAGCTGATGCTGACACTGACGGAGGCTGTTTGGCGATGGGGTGAGCAACGAGCCAATCGGGCTCTGACACTGTGATGAGGCGCTGCCCGCCTCCTGACAGTGACAGGGACTGATAGGCCTCAGGGAGACCTGACAGTGACGCTCGTCCCTCGCTGACTGACAGCAGCCTCAGCCAGTCATGTGAGCCTGACCCCTGGGTGTTGAGAGCTGA

Function

symbol description
selenop Predicted to enable selenium binding activity. Acts upstream of or within selenium compound metabolic process. Located in extracellular region. Is expressed in several structures, including female organism; head mesenchyme; pronephric duct; yolk; and yolk syncytial layer. Orthologous to human SELENOP (selenoprotein P).

NR:

description
selenoprotein P

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606522.2 False 2517 mRNA 0.51 5 41458287 41461918
XM_036980132.1 True 1344 mRNA 0.58 5 41458305 41460763

Neighbor

gene id symbol gene type direction distance location
LOC110525969 NA coding upstream 270115 41182848 ~ 41188172 (+)
efna5b LOC106585191 coding upstream 373839 40975379 ~ 41084448 (+)
fbxl17 fbxl17 coding upstream 571860 40568637 ~ 40886427 (+)
slc35d2 LOC106585185 coding upstream 924443 40527838 ~ 40533844 (+)
ccl27a ccl28 coding upstream 934005 40520974 ~ 40524282 (+)
LOC118964869 NA coding downstream 53821 41515545 ~ 41522572 (+)
oxct1a LOC106580620 coding downstream 109086 41571004 ~ 41677673 (+)
plcxd3 plcxd3 coding downstream 216855 41678773 ~ 41700121 (+)
c7a c7-2 coding downstream 261255 41723173 ~ 41729381 (+)
LOC118964870 NA coding downstream 292761 41754679 ~ 41757203 (+)
G507699 NA non-coding upstream 25009 41432136 ~ 41433278 (+)
G507637 NA non-coding upstream 181764 41276288 ~ 41276523 (+)
G507636 NA non-coding upstream 182852 41275095 ~ 41275435 (+)
G507634 NA non-coding upstream 184329 41273664 ~ 41273958 (+)
G507632 NA non-coding upstream 186158 41271902 ~ 41272129 (+)
G507771 LOC106585200 non-coding downstream 17167 41479085 ~ 41479316 (+)
G507773 NA non-coding downstream 19428 41481346 ~ 41481658 (+)
G507777 NA non-coding downstream 24581 41486499 ~ 41486763 (+)
G507782 NA non-coding downstream 29035 41490953 ~ 41491220 (+)
G507783 NA non-coding downstream 30414 41492332 ~ 41492575 (+)
G506285 NA other upstream 891858 40566067 ~ 40566429 (+)
G506281 LOC106585187 other upstream 910774 40544863 ~ 40547513 (+)
LOC110525949 LOC106585178 other upstream 1199237 40256994 ~ 40259050 (+)
G506095 atp5a1 other upstream 1254401 40196800 ~ 40203886 (+)
G507768 LOC105030512 other downstream 7633 41469551 ~ 41471408 (+)
G508559 dph7 other downstream 667307 42129225 ~ 42131940 (+)
G509160 NA other downstream 1105187 42567105 ~ 42570169 (+)
G510416 NA other downstream 2195550 43657468 ~ 43658493 (+)
G512192 LOC106584908 other downstream 3722521 45184439 ~ 45185869 (+)

Expression


Co-expression Network