LOC118964869


Basic Information

Item Value
gene id LOC118964869
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 41515545 ~ 41522572 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052108.1
ACAGCCTGTTTTCTGGACAGGAACGAAGCaggcagagaaatagagagagcgagagagatgagacCCACTGAACACCAGATACACAGAAGGAGGAGAGTAAAACAGGTGTTAAAAacttggaaGCACACGTGCACgcgcacatcatcatcatcatcatcatgacttCAGAAGGCTGCTGAAAGGAAAGACTGGggtcttggtaaCAATGACATGAGACAAACATGAGTGTGTGAGGCGAGTAGTAGCAGCCTACCTGATGATGTCACAGCAGACAGCCAACccagggaggggaagaggaggagaaaagatgGAGATGCCATGACGGTGGGGCTTCActttagtggagagagagggggggggagagagaaggataatcgTCATCGATGACATATCCTTGTAAAATATTAAGCCAAACTCTacccagtgctctctctctcactttccctccccatctctctctctcccccttctctgccCTGTTAGCACAAACTGTGACTGCCATGTATTTTCAGCTGGCCAATGTGAAACCTATCCCCAGACAACACATAATTAACCTACAATAAGCTACTGAGACGCTTCACACTACTGTGCATAAGATATGTCAGACCatgtgtttgtgtagtgtgtgtgtccttaATATCAGAGGTATAACTTGCGTGCATATGGAATGGTTCTCTCTCAGGCTATATGCATTGATTGTACAGACGCAAGATCTTCATttgagacagtctgctacagcaggaaaataatcctgtagcaacaggaaatgtgaattatgtggattataattcatggaaatgtatggggttgatacatttttcattagggaaaattaagtctgacattttaaagtggaaattacaaacattagaagcctttttaaaccttgaatatacGACAAGTTGGCATTTCCTGCTGTTGAGGAAAATTCTCAGCCATAAAAGAATGATCATATTTAGAGCCTTCTGAACagaaccactattgttttcattaCGTTTCACTGTTCCGACCAGcataataaagttctgaaccgctTAGA
>TU576392
AGGCTTCATCTTTGTTTTAAAGTGAAAAGCTGAGGATGAGGTATGGGTTGTGTACGTAATATTTACATGTTTGTAAAGGAAACCTGAAATATGTCTCTGTGATGTACATACATCAGCAAGTTGAAGTtgaataataatatatgccatagGTCTATGTCCATAAGTTGGACAGGGTGAGGGGGCAGTGTTAGACGACAGCCTGTTTTCTGGACAGGAACGAAGCaggcagagaaatagagagagcgagagagatgagacCCACTGAACACCAGATACACAGAAGGAGGAGAGTAAAACAGGTGTTAAAAacttggaaGCACACGTGCACgcgcacatcatcatcatcatcatcatgacttCAGAAGGCTGCTGAAAGGAAAGACTGGggtcttggtaaCAATGACATGAGACAAACATGAGTGTGTGAGGCGAGTAGTAGCAGCCTACCTGATGATGTCACAGCAGACAGCCAACccagggaggggaagaggaggagaaaagatgGAGATGCCATGACGGTGGGGCTTCActttagtggagagagagggggggggagagagaaggataatcgTCATCGATGACATATCCTTGTAAAATATTAAGCCAAACTCTacccagtgctctctctctcactttccctccccatctctctctctcccccttctctgccCTGTTAGCACAAACTGTGACTGCCATGTATTTTCAGCTGGCCAATGTGAAACCTATCCCCAGACAACACATAATTAACCTACAATAAGCTACTGAGACGCTTCACACTACTGTGCATAAGATATGTCAGACCatgtgtttgtgtagtgtgtgtgtccttaATATCAGAGGTATAACTTGCGTGCATATGGAATGGTTCTCTCTCAGGCTATATGCATTGATTGTACAGACGCAAGATCTTCATttgagacagtctgctacagcaggaaaataatcctgtagcaacaggaaatgtgaattatgtggattataattcatggaaatgtatggggttgatacatttttcattagggaaaattaagtctgacattttaaagtggaaattacaaacattagaagcctttttaaaccttgaatatacGACAAGTTGGCATTTCCTGCTGTTGAGGAAAATTCTCAGCCATAAAAGAATGATCATATTTAGAGCCTTCTGAACagaaccactattgttttcattaCGTTTCACTGTTCCGACCAGcataataaagttctgaaccgc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052108.1 False 1039 mRNA 0.43 3 41515739 41522572
TU576392 True 1228 lncRNA 0.42 3 41515545 41522567

Neighbor

gene id symbol gene type direction distance location
LOC110525974 selenop coding upstream 53821 41458287 ~ 41461918 (+)
LOC110525969 NA coding upstream 327567 41182848 ~ 41188172 (+)
efna5b LOC106585191 coding upstream 431291 40975379 ~ 41084448 (+)
fbxl17 fbxl17 coding upstream 629312 40568637 ~ 40886427 (+)
slc35d2 LOC106585185 coding upstream 981895 40527838 ~ 40533844 (+)
oxct1a LOC106580620 coding downstream 48432 41571004 ~ 41677673 (+)
plcxd3 plcxd3 coding downstream 156201 41678773 ~ 41700121 (+)
c7a c7-2 coding downstream 200601 41723173 ~ 41729381 (+)
LOC118964870 NA coding downstream 232107 41754679 ~ 41757203 (+)
htr1aa LOC106585208 coding downstream 249145 41771717 ~ 41773955 (+)
G507797 NA non-coding upstream 9561 41505901 ~ 41506178 (+)
G507794 NA non-coding upstream 15718 41499560 ~ 41500021 (+)
G507790 NA non-coding upstream 19002 41496387 ~ 41496737 (+)
G507788 NA non-coding upstream 19947 41495467 ~ 41495792 (+)
G507786 NA non-coding upstream 21481 41494035 ~ 41494258 (+)
G507747 NA non-coding downstream 30860 41553432 ~ 41557576 (+)
G508104 NA non-coding downstream 234659 41757231 ~ 41757833 (+)
G508300 NA non-coding downstream 297211 41819783 ~ 41820050 (+)
G508301 NA non-coding downstream 297567 41820139 ~ 41820424 (+)
G508312 NA non-coding downstream 304280 41826852 ~ 41827335 (+)
G507768 LOC105030512 other upstream 44331 41469551 ~ 41471408 (+)
G506285 NA other upstream 949310 40566067 ~ 40566429 (+)
G506281 LOC106585187 other upstream 968226 40544863 ~ 40547513 (+)
LOC110525949 LOC106585178 other upstream 1256689 40256994 ~ 40259050 (+)
G508559 dph7 other downstream 606653 42129225 ~ 42131940 (+)
G509160 NA other downstream 1044533 42567105 ~ 42570169 (+)
G510416 NA other downstream 2134896 43657468 ~ 43658493 (+)
G512192 LOC106584908 other downstream 3661867 45184439 ~ 45185869 (+)
LOC110526028 ccdc60 other downstream 3695155 45187119 ~ 45236944 (+)

Expression


Co-expression Network