oxct1a (LOC106580620)


Basic Information

Item Value
gene id oxct1a
gene name LOC106580620
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 41571004 ~ 41677673 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606527.2
CAGTGTCATTTAACCAGctgggatcacacacacacaacacaacacaaccgcCCGGTAGCCCACGTTGCTCATCATTTTGAAGACTGGTGGTTAGCTCCAAAAACATGGCGGCCCTCAAAGTATTGTCAAGAGCGGAGAATTTATTATTGAAAAATATATCTGCCACCTGCAGACCCAATTTGAACTCCATCACCCATTCCATGTTCAAGATGTGTGGCTGCTCCTATTCCACCTCCAGCCAGAGAAACTCCCAGTTCTACACAGACCCCACAGACGCTGTGAAGGACATCCCCAGTGGAGCCACTATCCTAGTGGGAGgTTTTGGTTTGTGTGGCATCCCAGAGAACCTTATCAACAGTTTATTAAAGACTGGTGTAAAGAGCCTCACAGCCGTCAGCAACAATGCTGGGGTGGATAACTTTGGGTTGGGTCTGCTCCTACAGACCAAACAGATCAAGAGGATGATCTCCTCCTATGTGGGAGAGAACATCGAGTTTGAGAGACAATACCTGTCTGGGGAGCTGGAGGTGGAGCTAACGCCACAgGGTACCCTAGCAGAGAGGATCAGAGCTGGCGGTGCGGGTGTTCCTGCCTTCTTCACGGCTACAGGCTATGGTACCCTCGTCCAGGAGGGCGGCTCCCCCATCAAATACAACAAGGACGGAACTATCGCCATCGCCAGTGAACAGAGAGAGGTGCGGGAGTTTAATGGAAGGCACTACATCATGGAGAAGGCCATCACCGGAGACTTTGCTCTGGTCAAGGCCTGGAAGGCCGACAAGGCCGGGAACGTAATCTTCAGGAAAACAGCCAGGAACTTCAACCAGCCCATGTGCAAGGCAGCCAAAGTCACCATTGTAGAGGTAGAGGAGGTGGTGGATGTGGGGACGTTTGCTGAAGAGGACATCCACATCCCTAGCATCTACATCCACAGGATCATCAAGGGAGGCAGCTACGAGAAGAGGATAGAGAGGCGTACAGTGCAGAAGGCCCAAGCAGAGAAGCCAAAACCAAAGAAGGACTCTGACATCGTACGAGAGAGGATCATTCGCCGGGCAGCTCTGGAGTTTGAGGATGGGATGTATGCTAACCTGGGCATTGGCATCCCCATGCTGGCCAGCAActtcatccaacctgacataacTGTCCACCTGCAAAGCGAGAACGGCATCCTGGGATTGgGCCCCTACCCCACAGAAGACGAAGTGGATGCTGACCTCATTAACGCTGGTAAAGAAACGGTGACTGTGCTTCCAGGAGCTTCCTACTTCTCCAGTGACGAATCGTTTGCCATGATCAGAGGTGGTCACATCAACTTGACGATGCTGGGAGCCATGCAGGTTTCTAAGATGGGAGACCTGGCCAACTGGATGATCCCGGGTAAGATGGTGAAGGGAATGGGTGGAGCCATGGATCTGGTGGCCAGCGCTGGAACCAAGGTGGTCGTCACCATGGAGCACTCAGCTAagGGAGGAAAACACAAGATTCTGGACACGTGCAACCTGCCACTGACAGGAAAACAGTGTGTGGATCGGATCAtcactgaaaagGCTGTGTTTGATGTGGACAAGACTAAAGGTCTGACACTGATCGAGGTGTGGGAGGGACTCACTCTAGAGGACATTAAGGCATGCACTGGAGCACACTTTGCGGTTTCTCCAAACGTGAGGTCCATGCAGCAGGTCTAGAAGCTGGGGGGAGGAAGTGTCCGAGGAGAGGAGCTATGACTTGAAGGCTGTTTTAATCTCTCCGTATGTACGCTGGAAGGAACACAAACTATGAACTCATCCTAATGTTACTGAACACCACGTCTGTACACTGAATCATAACATTACTGTAACGTCAATGAATGTAACATGTGAGATTCATAACGAATACTCGGGTTGAGTTATGATGTTGAACATATTGTAACAATTGACTTGAAGGACTGGTATCCCTGGCATAACTCAAGAGGAACTGTCTAAACATGTATTTAGTAATAATGTTATGTTTTAATCATGTGTTTTAATGCTATGTCAAAGTTTCTCCCAGACTtataacacaaacaattatgGACTGCTTTTCATCCCAGAAAGTTGTGTCCTCCCTTCTGCACTTGTTCAAGCCCTTCCTTGGATGTGGATCAGCTGGTTTCTTTTTGGTAGATATGTATACCTTATAAGCAATAACTCCATCTACTTTCAGACACACTGCTTTCTCTGATTTAGTGAAATGGGAGTGAATAGGAGAAGAAGGGTGGAGGCAACTTGATGGTATGAAACGCAGCCCTGCTGTGAAAACTGATATGATGTTGTTTTGAATTGCATTTGAGCCTCTACATTTCATCCTAGTTTGGTGCTTTAGTTAAAAGGTTACCCTCATGGAAACACACTCTTCATAAAAAATATATGGTTCCAGATATTTTAGCTACTACAAAATATGAGGCCTTCCATTTTCTACCTGGACTTCTTCTGTGCCATGTATTTATATATTAAATTAAACTGTGTGTTACCTTGAGGAGAAAAAAT
>XM_021606528.2
GCGGAGTGTACCTCCGACTACATCAAGTCGCTGTCAGACGATACCAGTATCAGTCGGGGGTTGTATTTGATTAAGGTTTTATtaaaaagtatggatttcagcaaacaaagaaaggcACACAACAACCGAGGACAAACATAAGAACACGATGTGTGGCTGCTCCTATTCCACCTCCAGCCAGAGAAACTCCCAGTTCTACACAGACCCCACAGACGCTGTGAAGGACATCCCCAGTGGAGCCACTATCCTAGTGGGAGgTTTTGGTTTGTGTGGCATCCCAGAGAACCTTATCAACAGTTTATTAAAGACTGGTGTAAAGAGCCTCACAGCCGTCAGCAACAATGCTGGGGTGGATAACTTTGGGTTGGGTCTGCTCCTACAGACCAAACAGATCAAGAGGATGATCTCCTCCTATGTGGGAGAGAACATCGAGTTTGAGAGACAATACCTGTCTGGGGAGCTGGAGGTGGAGCTAACGCCACAgGGTACCCTAGCAGAGAGGATCAGAGCTGGCGGTGCGGGTGTTCCTGCCTTCTTCACGGCTACAGGCTATGGTACCCTCGTCCAGGAGGGCGGCTCCCCCATCAAATACAACAAGGACGGAACTATCGCCATCGCCAGTGAACAGAGAGAGGTGCGGGAGTTTAATGGAAGGCACTACATCATGGAGAAGGCCATCACCGGAGACTTTGCTCTGGTCAAGGCCTGGAAGGCCGACAAGGCCGGGAACGTAATCTTCAGGAAAACAGCCAGGAACTTCAACCAGCCCATGTGCAAGGCAGCCAAAGTCACCATTGTAGAGGTAGAGGAGGTGGTGGATGTGGGGACGTTTGCTGAAGAGGACATCCACATCCCTAGCATCTACATCCACAGGATCATCAAGGGAGGCAGCTACGAGAAGAGGATAGAGAGGCGTACAGTGCAGAAGGCCCAAGCAGAGAAGCCAAAACCAAAGAAGGACTCTGACATCGTACGAGAGAGGATCATTCGCCGGGCAGCTCTGGAGTTTGAGGATGGGATGTATGCTAACCTGGGCATTGGCATCCCCATGCTGGCCAGCAActtcatccaacctgacataacTGTCCACCTGCAAAGCGAGAACGGCATCCTGGGATTGgGCCCCTACCCCACAGAAGACGAAGTGGATGCTGACCTCATTAACGCTGGTAAAGAAACGGTGACTGTGCTTCCAGGAGCTTCCTACTTCTCCAGTGACGAATCGTTTGCCATGATCAGAGGTGGTCACATCAACTTGACGATGCTGGGAGCCATGCAGGTTTCTAAGATGGGAGACCTGGCCAACTGGATGATCCCGGGTAAGATGGTGAAGGGAATGGGTGGAGCCATGGATCTGGTGGCCAGCGCTGGAACCAAGGTGGTCGTCACCATGGAGCACTCAGCTAagGGAGGAAAACACAAGATTCTGGACACGTGCAACCTGCCACTGACAGGAAAACAGTGTGTGGATCGGATCAtcactgaaaagGCTGTGTTTGATGTGGACAAGACTAAAGGTCTGACACTGATCGAGGTGTGGGAGGGACTCACTCTAGAGGACATTAAGGCATGCACTGGAGCACACTTTGCGGTTTCTCCAAACGTGAGGTCCATGCAGCAGGTCTAGAAGCTGGGGGGAGGAAGTGTCCGAGGAGAGGAGCTATGACTTGAAGGCTGTTTTAATCTCTCCGTATGTACGCTGGAAGGAACACAAACTATGAACTCATCCTAATGTTACTGAACACCACGTCTGTACACTGAATCATAACATTACTGTAACGTCAATGAATGTAACATGTGAGATTCATAACGAATACTCGGGTTGAGTTATGATGTTGAACATATTGTAACAATTGACTTGAAGGACTGGTATCCCTGGCATAACTCAAGAGGAACTGTCTAAACATGTATTTAGTAATAATGTTATGTTTTAATCATGTGTTTTAATGCTATGTCAAAGTTTCTCCCAGACTtataacacaaacaattatgGACTGCTTTTCATCCCAGAAAGTTGTGTCCTCCCTTCTGCACTTGTTCAAGCCCTTCCTTGGATGTGGATCAGCTGGTTTCTTTTTGGTAGATATGTATACCTTATAAGCAATAACTCCATCTACTTTCAGACACACTGCTTTCTCTGATTTAGTGAAATGGGAGTGAATAGGAGAAGAAGGGTGGAGGCAACTTGATGGTATGAAACGCAGCCCTGCTGTGAAAACTGATATGATGTTGTTTTGAATTGCATTTGAGCCTCTACATTTCATCCTAGTTTGGTGCTTTAGTTAAAAGGTTACCCTCATGGAAACACACTCTTCATAAAAAATATATGGTTCCAGATATTTTAGCTACTACAAAATATGAGGCCTTCCATTTTCTACCTGGACTTCTTCTGTGCCATGTATTTATATATTAAATTAAACTGTGTGTTACCTTGAGGAGAAAAAAT

Function

NR:

description
succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial-like isoform X1

GO:

id name namespace
GO:0046952 ketone body catabolic process biological_process
GO:0005739 mitochondrion cellular_component
GO:0008260 3-oxoacid CoA-transferase activity molecular_function

KEGG:

id description
K01027 OXCT; 3-oxoacid CoA-transferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606527.2 False 2507 mRNA 0.48 17 41571004 41677673
XM_021606528.2 True 2446 mRNA 0.47 17 41576211 41677673

Neighbor

gene id symbol gene type direction distance location
LOC118964869 NA coding upstream 48432 41515545 ~ 41522572 (+)
LOC110525974 selenop coding upstream 109086 41458287 ~ 41461918 (+)
LOC110525969 NA coding upstream 382832 41182848 ~ 41188172 (+)
efna5b LOC106585191 coding upstream 486556 40975379 ~ 41084448 (+)
fbxl17 fbxl17 coding upstream 684577 40568637 ~ 40886427 (+)
plcxd3 plcxd3 coding downstream 1100 41678773 ~ 41700121 (+)
c7a c7-2 coding downstream 45500 41723173 ~ 41729381 (+)
LOC118964870 NA coding downstream 77006 41754679 ~ 41757203 (+)
htr1aa LOC106585208 coding downstream 94044 41771717 ~ 41773955 (+)
paxx ci142 coding downstream 459380 42137053 ~ 42143608 (+)
G507747 NA non-coding upstream 13428 41553432 ~ 41557576 (+)
G507797 NA non-coding upstream 64826 41505901 ~ 41506178 (+)
G507794 NA non-coding upstream 70983 41499560 ~ 41500021 (+)
G507790 NA non-coding upstream 74267 41496387 ~ 41496737 (+)
G508104 NA non-coding downstream 79558 41757231 ~ 41757833 (+)
G508300 NA non-coding downstream 142110 41819783 ~ 41820050 (+)
G508301 NA non-coding downstream 142466 41820139 ~ 41820424 (+)
G508312 NA non-coding downstream 149179 41826852 ~ 41827335 (+)
G508355 NA non-coding downstream 181911 41859584 ~ 41859819 (+)
G507768 LOC105030512 other upstream 99596 41469551 ~ 41471408 (+)
G506285 NA other upstream 1004575 40566067 ~ 40566429 (+)
G506281 LOC106585187 other upstream 1023491 40544863 ~ 40547513 (+)
LOC110525949 LOC106585178 other upstream 1311954 40256994 ~ 40259050 (+)
G508559 dph7 other downstream 451552 42129225 ~ 42131940 (+)
G509160 NA other downstream 889432 42567105 ~ 42570169 (+)
G510416 NA other downstream 1979795 43657468 ~ 43658493 (+)
G512192 LOC106584908 other downstream 3506766 45184439 ~ 45185869 (+)
LOC110526028 ccdc60 other downstream 3540054 45187119 ~ 45236944 (+)

Expression


Co-expression Network