plcxd3 (plcxd3)


Basic Information

Item Value
gene id plcxd3
gene name plcxd3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 41678773 ~ 41700121 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606530.2
GCCTATACACGGACAGGCAAACGCAAGGCGTGTGGATGCAGTAGTGGAGAGCCAGACAGACATTGTTGTAGAATGGTACATGGGACTGATTATTGAATTAAGTTGTGGCTAGCTGGGCGCACCCTTATTTTAATGACTTCAAGAACTAATGGCTGAATACATCACTCGCCTGCTCTGAGACCATCCTAAAAGCACAACTTTATCGAAAACACAACTCTATCGACATATCCTATAAAAAATGGGTTCCCTATCTATGTCTGCACGCCATTCAGGGGGTGTGGTGTGAACTCACTCGCTCCCGGTcacgctggtgtgtgtgtggtgagtggaGCGAACGCAGCACAGAGAAAGCGCACTCAAAGCTCGCGCAGGCACCGGAAAGTGGGGATATAGTGCGCGGCGGCATGGCTTCGTCTCACGGGAAAAACGAACACCGGTTCGCCGACTGGATGGCGAATTTACCGGAGAGCATGCACAGCATCCCGCTTACCAACCTGGCCATTCCAGGTTCCCATGACTCCTTCAGTTTCTACATAGACGAGTCCTCTCCGGTGGGTCCTGAGCAGACTGACGCTGTCCAAAACTTTGTGTCGGTCTTTGGCACGGTGGCCAAGAAGCTGATGCGTAAATGGCTGGCCACTCAGACTATGAACTTCTCCAGCCAGCTGGAGGCCGGCGTCCGCTTCTTTGACCTGCGCATTTCCACCAAGCCCCGGGACCCAGACAACGAACTCTTCTTCGCTCATGGCCTCTTCAGCGCCACGGTGAGAGAAGGTCTGGAGCAGATCAGCTCCTTCCTGTCGGCCCATGCCAGAGAGGTTGTGTTCCTGGACTTTAACCACTTCTACGGTGTTCAGAACCTGCACCATGAGAAGTTGGTCTCAATGCTGAGAGACGTGTTCGGGGAGAAACTCGCCCCCGTCGTCTTCGCTCAGGAGgtgAGTCTCCAGTACCTGTGGGAGAAAGAGTACCAGGTATTGGTGTTCTACCACAGTCCTATGGCCCTGGAAGTGCCATTTCTATGGCCTGGTCAGATGATGCCTGCTCCCTGGGCCAACACCACTGACCCTGAAAAGCTGATCCAGTTCCTCCAGGCCTCTGTGGCTGACCGCAGGAGGAAGGGAACATTCTTTGTCTCCCAAGTGGTCCTCACACCTAAGGCCAGCACCGTCATGAAAGGAGTAGCCAGCGGACTGAGGGAGACCATTACAGAGAGGGCTCTTCCAAGTATGATGCTGTGGATTCGGGCCCAGAGGCCCGGAGAGAGCGGCATCAACATCATCACAGCTGACTTTGTGGAGCTGGGAGACTTCATCAGCGCTGTCATCACGCTCAACTATCATATGGATGATGAGGAGGAAAATGCCACCTGAGACTGAAAGACAGGGGGTACCAAAGAGTTAAGTCCTCAGCTCAGTCTCACTTTCTCTTTGGTGTTCATTTTCAGGAGAGGCGTTCCTCTGACTTATTGTATAGGGCTATCAGAGtttacagaggaagagagagcgagagagagagagagagaggagggagaaggatacgttaagataggaggagaaaggaaggtggaggtggagatagGGAGGATGGACTTTGGTGCTCGTTTAGAGCGCCGAAAGTGAATGGGAAATGTTTGGTTTTATCTGTTTTGGGGGTCAAAAGGGCAATTGGTTTTTAACGACGCTTCGCTTGGCTTCGCTTCAAATCTGCTGTAATGATAACTGCTTCTATCCTCCAATCACACAAGCTCGTGTTTCTGGCATTTCCATCTCTTGTGAGGCTTAGGCTAGCTTATTAGCATATTCTACAGACATAAATGTTGTTCGTATTTTAGTGACAGTGATGGCCAACCTACATCAAAACTCATTTTCATTGGTGCCAGTAATACATCTGATTGCCGTCAACCTGATTAGCATGTCAACTACTCACACATGGCTGTAGAATTTACTttatgatggatggatggatggattggttGATTGATGGATGGAGCTTCCCAAATAGTTATTATAGTTTTTCGATCTCTTTCTACATTTATTGATTATTTTGTCTCTGTATCAGTCCTGTCACCACAATGCGTAAATTGATAACTTCTCCTTGCAGTACATTGATTTAGCTCCTAGACCACCTGTAACAGCACTTTCTCTATGTTACAGATTGCCAGACCGATTGATATTTGTGTGTCTTTTGATTGATTGCCTCTCCCGAGTGCCCTCTGTAGCATATTGtagatcagtgtttcccaaccctggtcctcaagctcccccaacagtacacatttgtattgtaaccctggacaagcacacctgattcaacttgtcaactaatcatcaagtcctcaatgagttgaatgaggtgtgtttgtcaagggctacaacaaaactgtgaactgttgggggtacttgaggaccagggttgggaaacactgttgtaGATGACCATGAAACAGGTTTAATTTCATGTTTCTCGTAATGGGCTTGATATCATTCTAATCTCATGTCTGTTGTACTGAAATATTCACCACAAtattagaatttttttttttaatcattgaACTTTTCTTCTGTTCATTTACttgtatagaatataatagaatagctATCTGTTGCTTCTCTATTACTCATGTGTTTGCCTGCTTAATTGCATTCAGTCTAGTAGAAATATGTTTCCCTTGCTTTACTCTGCACCTATTCAGGACAAACTGTAAATGCTAAACTAGGAAGAAAAGTTCTATTTGAAGTGGCACTTGCGGCGTAGTGAAGACTACAATACGTGTCACATTTCCTTTGCTAAAATTTGTTTTGCACATTATGCAAGAACTTCGCATATATATCAAAAGCTTTGCCTCActtctccccccccaaaaaaatgttacGATTATTAGTGCATCTTTTACAGAGAATGTATTCTGATAAATTGTTATGTAAACTAATATGTTTATTGTGAACCAAAAAAAGGAGGAAATGTTATATTTTGAATATGTGAATGTGTGTCCTGTACGAAATTGTGCCATTTCCAActtttttcagtgtgtgtgtttttatgtaagagagggacagacagacacagacagacacagacagacacagacagacagacacagacagacacagacagaca

Function

symbol description
plcxd3 Predicted to enable phosphoric diester hydrolase activity. Predicted to act upstream of or within lipid catabolic process and signal transduction. Predicted to be active in synapse. Is expressed in basal plate midbrain region; central nervous system; neurons; otic vesicle; and pharyngeal arch. Orthologous to human PLCXD3 (phosphatidylinositol specific phospholipase C X domain containing 3).

NR:

description
PI-PLC X domain-containing protein 3

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0016042 lipid catabolic process biological_process
GO:0004871 obsolete signal transducer activity molecular_function
GO:0008081 phosphoric diester hydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606530.2 True 3120 mRNA 0.46 6 41678773 41700121

Neighbor

gene id symbol gene type direction distance location
oxct1a LOC106580620 coding upstream 1100 41571004 ~ 41677673 (+)
LOC118964869 NA coding upstream 156201 41515545 ~ 41522572 (+)
LOC110525974 selenop coding upstream 216855 41458287 ~ 41461918 (+)
LOC110525969 NA coding upstream 490601 41182848 ~ 41188172 (+)
efna5b LOC106585191 coding upstream 594325 40975379 ~ 41084448 (+)
c7a c7-2 coding downstream 23052 41723173 ~ 41729381 (+)
LOC118964870 NA coding downstream 54558 41754679 ~ 41757203 (+)
htr1aa LOC106585208 coding downstream 71596 41771717 ~ 41773955 (+)
paxx ci142 coding downstream 436932 42137053 ~ 42143608 (+)
LOC110525988 LOC106584966 coding downstream 544384 42244505 ~ 42249266 (+)
G507747 NA non-coding upstream 121197 41553432 ~ 41557576 (+)
G507797 NA non-coding upstream 172595 41505901 ~ 41506178 (+)
G507794 NA non-coding upstream 178752 41499560 ~ 41500021 (+)
G507790 NA non-coding upstream 182036 41496387 ~ 41496737 (+)
G508104 NA non-coding downstream 57110 41757231 ~ 41757833 (+)
G508300 NA non-coding downstream 119662 41819783 ~ 41820050 (+)
G508301 NA non-coding downstream 120018 41820139 ~ 41820424 (+)
G508312 NA non-coding downstream 126731 41826852 ~ 41827335 (+)
G508355 NA non-coding downstream 159463 41859584 ~ 41859819 (+)
G507768 LOC105030512 other upstream 207365 41469551 ~ 41471408 (+)
fbxl17 fbxl17 other upstream 819251 40568637 ~ 40886427 (+)
G506285 NA other upstream 1112344 40566067 ~ 40566429 (+)
G506281 LOC106585187 other upstream 1131260 40544863 ~ 40547513 (+)
LOC110525949 LOC106585178 other upstream 1419723 40256994 ~ 40259050 (+)
G508559 dph7 other downstream 429104 42129225 ~ 42131940 (+)
G509160 NA other downstream 866984 42567105 ~ 42570169 (+)
G510416 NA other downstream 1957347 43657468 ~ 43658493 (+)
G512192 LOC106584908 other downstream 3484318 45184439 ~ 45185869 (+)
LOC110526028 ccdc60 other downstream 3517606 45187119 ~ 45236944 (+)

Expression


Co-expression Network