si:dkey-250l23.4 (LOC106584965)


Basic Information

Item Value
gene id si:dkey-250l23.4
gene name LOC106584965
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 41759479 ~ 41769211 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604989.2
ccatgagagggacagggacagagaaagagacagccagagaaatagagaaagagagaccagagaccaagagagagagagagctagtgacTGGGATAgaaacagggacagggacagggacagagaggaccGGAGGGGCAGGACACAAAGCTTTCCAAACAGTAACTCTAACCCTCTTCAGACTAACACCATGGAGGCTCCAGAGGGTCAGGGGAGACTGCAGAGAGGACTACCCTCACCTGGACAACCCCACGCCAGTTACCAACGATCTAGCACCACCCTCAGGTCTCCACGCCAAGCCTCCGGCTCCATCTCTCCCACCCTACTCCGCCCATCCATCCGAATCAGAACCTCCACTCTGTCACCAAGGAGACTGCCGCAAAGGATGGACATCACGGAAACGCGATGTGGCATGTACACGGTTAGAGAGCCAGGTGCATTCTGGGTAGAGCCCGGGATTGGGATTGGCCAATTGTCCGAGAGAAGAAGGACTCAAACACGCCTCTTCTCCCACAGCAGCTTAGAGctggaagaggaagaggatgaggaagaagagggagaagaagaggaagaggaggagggaggagaggcagggggtaGTGGTGTGATAGGGGTGGTGACTCAGACGCTGACTACAGCTGTGCCCTTGTCCCCTGCTCCAGCAGCGATGGATAGGAGGATGACTaaaagagagaggaacaggatgaAGAGTCTGAGGAaaaggcagaggaggagagagagatggagacagagccaGCTGCTGGAGAATAGACAGAGTTCGACGGGGAACccatcgagcagcagtgaggaggaggatgatgtgaGTGCCAGGGACAGAGAGGGCTTCATCTGTGCTGTGTGTCTGGATGTTTACTTCAGCCCCTACATGTGCCACCCCTGTAACCACATCTTCTGTGAGCCCTGCCTCCGTACCCTGGCTAAGAACAGCCCAACCAACACCCCTTGCCCACTCTGCAGGACCACCATCACTCACGTCTTCTTCCAGACGGAGTTGAACCACACAGCACGGACGTTCTTCCCAAAGGAATACTTTTCCCGGAAACAGACCTTCCAGAAGGCAAGCTGTGCAAAATGGCCGCTCCCAAGCTGCAGGAAACTTTTCCGTATTTTTGGAGGTTTCCAGAGGCAAGCTAGTCCAATAGCCAGGCGTCAGTTTCCCCACGGGGGGTACCGTCTAGACGCCATGGACTTTGAGGACAATTCTCGCGGCTGGCGCTTTGACATTGACATGGTCATTATCTATATCTATTCTGTCAACTGGGTCATCGGCTTCATCATCTTCTGCTTTCTCTGCTACTTCTTTTTCCCTTCTTTCTAAagtcagatggatggatggatggatggatggatggatggatggat

Function

NR:

description
E3 ubiquitin-protein ligase RNF180

GO: NA

KEGG:

id description
K15708 RNF180; E3 ubiquitin-protein ligase RNF180

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604989.2 True 1380 mRNA 0.54 4 41759479 41769211

Neighbor

gene id symbol gene type direction distance location
rgs7bpa LOC106585207 coding downstream 6519 41735103 ~ 41752960 (-)
c6h5orf51 LOC106585203 coding downstream 188822 41566051 ~ 41570657 (-)
fbxo4 fbxo4 coding downstream 193486 41562084 ~ 41565993 (-)
ghra LOC106585200 coding downstream 219329 41474979 ~ 41540150 (-)
znf131 znf131 coding downstream 300384 41431651 ~ 41459095 (-)
ipo11 ipo11 coding upstream 120648 41889859 ~ 42124064 (-)
dph7 dph7 coding upstream 360007 42129218 ~ 42139055 (-)
LOC110525987 LOC106585210 coding upstream 377291 42146502 ~ 42241438 (-)
npdc1b LOC106585212 coding upstream 483272 42252483 ~ 42301749 (-)
LOC110525990 LOC106585213 coding upstream 533710 42302921 ~ 42360392 (-)
G508222 NA non-coding downstream 58352 41698218 ~ 41701127 (-)
G508190 NA non-coding downstream 70464 41645283 ~ 41689015 (-)
G508141 NA non-coding downstream 197792 41560765 ~ 41561687 (-)
G507961 NA non-coding downstream 261069 41498140 ~ 41498410 (-)
G508296 NA non-coding upstream 48157 41817368 ~ 41817677 (-)
G508299 NA non-coding upstream 50242 41819453 ~ 41819779 (-)
G508315 NA non-coding upstream 57635 41826846 ~ 41827245 (-)
G508316 NA non-coding upstream 58103 41827314 ~ 41827549 (-)
G508339 NA non-coding upstream 72645 41841856 ~ 41842088 (-)
G507906 selenop other downstream 297557 41421024 ~ 41461922 (-)
G507063 NA other downstream 1217150 40540659 ~ 40542329 (-)
G506785 NA other downstream 1869548 39887022 ~ 39889931 (-)
LOC110525932 LOC106585164 other downstream 1921319 39826260 ~ 39877951 (-)
G508303 NA other upstream 51644 41820855 ~ 41821210 (-)
G508891 NA other upstream 374886 42144097 ~ 42144885 (-)
G509034 LOC106585214 other upstream 603230 42372441 ~ 42403220 (-)
G509432 NA other upstream 874308 42643519 ~ 42645869 (-)
G509902 NA other upstream 1307481 43076692 ~ 43077157 (-)

Expression


Co-expression Network