htr1aa (LOC106585208)


Basic Information

Item Value
gene id htr1aa
gene name LOC106585208
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 41771717 ~ 41773955 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606534.2
TGAGGCTACAGAGGTAGATAAGAATCGAAAGGCTATGAGAATAGGTTCAAAAAGAAGATACACAAGTCGAAAATGAAAcagaagaggaaggaaaccaggGGAGAAGCTTTGCTTTTTATCTGTCGTCTGCCACCACCGAGACGAAACACTGCCAGGGAGAGCAGGGCAACAAAACTCCGCGGCGACCTCATGGCAGTCTGACGTACACCTACCGCTGCTGGTATAAATGAATTCACGGCGTCACCAGGCGCAGATGATTTGAAGGACCAGTGAGCGCCCCGGCCgtcaacacacacatgcagacacacacacacacactcacacacacacacagcaatctgCGTCATGCGTCGCCGGAATGAAGGAACGGGCACGGGAACTCCGATGGACCCCGTTAGTACCCACACCGGCTGCAGCACGAGGGACTGACCGAGCCTCCAGATTCCCCCCTTTGGCTCCCCTGTCCTATCCTACCGGGCGCGCCGTGTGTGTCTCGGACCCTGAAGAACTATGGATTTTATCAATAACGGCAGTGAAAATAACAATACGACCACAGCCTTTCCCGATGTTGTGGATGTCATTCCAGAGTGGGGTGACAATGACAAAGAAAAGGGGTCTAGAAGTGTTCCCGAGGTGGAGCTGAGTTACCAGGTGATCACCTCTCTGCTGCTCGGCGCGCTCATCCTCTGTTCCATATTCGGCAACGCGTGCGTTGTCGCGGCCATCGCGCTGGAGAGGTCTCTCCAGAACGTGGCCAACTATCTGATCGGCTCGTTAGCCGTCACGGACCTCATGGTATCAGTTCTGGTACTACCCATGGCGGCCCTCTACCAAGTCCTGAACAAATGGACTCTGGGACAGGAGATATGTGATATTTTCATCTCTCTGGACGTGTTGTGCTGCACGTCGTCCATTTTGCATCTGTGCGCAATTGCCCTGGACAGGTACTGGGCTATCACAGACCCCATAGACTATGTGAACAAACGGACACCCAGGCGAGCGGTGCTGCTGATCAGCGTGACTTGGCTGATTGGGTTCTCAATCTCCATCCCGCCCATGCTAGGCTGGAGGAAAGCCGAGGACAGGGCGAACCCGGACGCCTGCACCATCAGCCAGGACCCGGGCTACACCATCTACTCCACGTTCGGAGCTTTTTACATCCCGCTTATCCTCATGCTGGTCCTCTACGGGCGGATATTCAAGGCAGCCAGGTTCCAGGTTTGGAAAACTGTGAAGAAATCGGAAAAGGCAAAAGTGTCGGACAAGTGCTTGGCCGTGTCGCCGGCTATTTTCCACAAGAAGGTCAACGTAGATGCGGGGGGAAAGAACTGGAAACACAGTGTGGAACCTACATCCAAGCCTTCGTGCGTAAACGGCGCGGTGAACCACGGGGAGAACTGCGAGTCGTTGGAGATCATAGAAGTTACCAACAATTCTAAGAACCACCTGCCTCTCCCCAACACTCCACAGTCATCACATGAGGTTGAGAACAGGAACGAAAAGAACGCTGAGGCTAAGAGGAAAATAGCTCTGGCCAGGGAGCGGAAAACGGTAAAGACGCTCGGTatcatcatggggacttttattttcTGCTGGCTACCGTTTTTCATCGTGGCTCTGGTCTTGCCTTTCTGTGCGGATAGCTGTTACATGCCAGAGTGGCTGGGTGCCGTCATCAACTGGCTGGGCTATTCGAACTCTCTCCTAAACCCGATCATTTATGCCTACTTTAACAAAGACATCCAAAGTGCTttcaaaaaaattataaaatgcAAATTCCATAGACAGTGAGCCGTTCATCAGTAAAGTGTTTACGTTTACTTCATTCCAATGATGGAGTTTATGAAACGCACAAAAACAACGTGTTATTTTCAGGGACTGTCTCTAGCCGACGGTGTGAATTAGAAACAGAATAGCCTATGGGTCATATACAGTGAGACgtggagagagacatgcagtatATTTGTAGGCCTATTATGCTGTGTACGCTGCTCCTGTGTAGCATATTCGATGTTGTAGATATCTGCAAGGCATCGTTGTATTCCCATGTAAAACGTGTTATTCAAATACAATTCACAGAATTCATGCATTCCATTCACGtgacctggtctcagagcatttcgtattattctgtacgtaaatccgagacactatatttagtatgatatgttacgtttccgTCCTACATCATACCAGCTTTGTAGCACTGAAACAATAAAAAACTATCGAAATACTACAA

Function

NR:

description
5-hydroxytryptamine receptor 1A-alpha-like

GO:

id name namespace
GO:0007210 serotonin receptor signaling pathway biological_process
GO:0046883 regulation of hormone secretion biological_process
GO:0008283 cell population proliferation biological_process
GO:0042310 vasoconstriction biological_process
GO:0050795 regulation of behavior biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0004993 G protein-coupled serotonin receptor activity molecular_function

KEGG:

id description
K04153 HTR1; 5-hydroxytryptamine receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606534.2 True 2239 mRNA 0.50 1 41771717 41773955

Neighbor

gene id symbol gene type direction distance location
LOC118964870 NA coding upstream 14514 41754679 ~ 41757203 (+)
c7a c7-2 coding upstream 42336 41723173 ~ 41729381 (+)
plcxd3 plcxd3 coding upstream 71596 41678773 ~ 41700121 (+)
oxct1a LOC106580620 coding upstream 94044 41571004 ~ 41677673 (+)
LOC118964869 NA coding upstream 249145 41515545 ~ 41522572 (+)
paxx ci142 coding downstream 363098 42137053 ~ 42143608 (+)
LOC110525988 LOC106584966 coding downstream 470550 42244505 ~ 42249266 (+)
stxbp1b LOC106585214 coding downstream 598576 42372531 ~ 42415108 (+)
camsap1b LOC106585218 coding downstream 829353 42603308 ~ 42645904 (+)
LOC110525996 LOC106585219 coding downstream 872079 42646034 ~ 42655499 (+)
G508104 NA non-coding upstream 13884 41757231 ~ 41757833 (+)
G507747 NA non-coding upstream 214141 41553432 ~ 41557576 (+)
G507797 NA non-coding upstream 265539 41505901 ~ 41506178 (+)
G507794 NA non-coding upstream 271696 41499560 ~ 41500021 (+)
G508300 NA non-coding downstream 45828 41819783 ~ 41820050 (+)
G508301 NA non-coding downstream 46184 41820139 ~ 41820424 (+)
G508312 NA non-coding downstream 52897 41826852 ~ 41827335 (+)
G508355 NA non-coding downstream 85629 41859584 ~ 41859819 (+)
G508450 NA non-coding downstream 218828 41992783 ~ 41992996 (+)
G507768 LOC105030512 other upstream 300309 41469551 ~ 41471408 (+)
fbxl17 fbxl17 other upstream 912195 40568637 ~ 40886427 (+)
G506285 NA other upstream 1205288 40566067 ~ 40566429 (+)
G506281 LOC106585187 other upstream 1224204 40544863 ~ 40547513 (+)
LOC110525949 LOC106585178 other upstream 1512667 40256994 ~ 40259050 (+)
G508559 dph7 other downstream 355270 42129225 ~ 42131940 (+)
G509160 NA other downstream 793150 42567105 ~ 42570169 (+)
G510416 NA other downstream 1883513 43657468 ~ 43658493 (+)
G512192 LOC106584908 other downstream 3410484 45184439 ~ 45185869 (+)
LOC110526028 ccdc60 other downstream 3443772 45187119 ~ 45236944 (+)

Expression


Co-expression Network