npdc1b (LOC106585212)


Basic Information

Item Value
gene id npdc1b
gene name LOC106585212
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 42252483 ~ 42301749 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606543.2
TGTGACAGACAGCAGCCCTGCCCTCACTCGTTTCTTCAACCGTCACACATAAAGCGACATAATGGGATCCTGCGCAAAACACATAGCAGACGAAATCGTTGACCAGCGCTTTATTACCGAATCTGGTTCTTGCAACTGAGCGCCTTTTCTACTCCGCATTCTGAATACATATTTACAAAAGCTGAGCACCTTTCCAAAGCTTCTTTCTGTTCTAAGGGGATGGGGGAATGATCAACCCCGACTCCCCAGCTCAGTTGTATCAGTTGTAAGAGCGCTTTGCAGTATGCCATCCCCGAGAAGAGGTGTCGATCACCGACCGAGAACCGCCGCCACGCTTCTAACCCAGGTTGCTGTCTTTGCAACCTTCGTTGCTATGAGCGCATGCATGCCAGGGTCTTCTTCAGTATGCCCGCGGAGCTTAGACTGTGCCAGAGCAGGGCGTCATTTCTGCCAGCCGGGCAGCTCACACTGCGGCCCCTGCCTCAACCCGCTGGTAGAGAACTCACATGGCAGATGCATAGTGAAGAGGAGACATGCTCACGCCCCCCATTTTGCGGGAAAAGTGACCACGTTCCCTGAAGTGGATGAGGAGATAGACTTCCTGTCCACCATCATCAGCCAACGGAAGGAGTCGGGGGTCAAACATCCAGctcctctctctcaggATTTTTCCAAAGCCGAGGAGGAAGATGACCCATCCATGATCCTCACCCAACGGCCTACCACAGACCAGCCTACGACACACAGTACCACTACAGCCGCGTATAACACGACTACAGCCgcccccaccaccacccacatCCCAGCAGTTCGTAGTGGGCCCCTGATCATCCCTTACCCCTCCAACGATCATGTGTTTATTGTCATGACTAGTGTGTTTGTGGTCATGGGATCTGTGGCCTTGCTCTTGGCTGGTGTCTGTTGGATCAGGTTGCAGAGAGGTGTGCGCCTGGCTCAGAAGGCAGACTACCCTGCTTATGGGGGTACGGGGCCCCATTCCTATGACAACAATGTGCCTGGGGATAAGAGGCTGGCTCAGAGTGCCCAGAtgtaccactaccaacaccagaAACAGCAGATGCTCTCCCTGCAGAAACAACGGGATGAGCCAAAGGTGCCTGACTCTGTGGCCACGTCAGATGAGGAGAATGAGGACGGGGATTTCACGGTGTACGAGTGTCCTGGATTGGCCCCAacaGGGGAAATGGAGGTGAAGAATCCTTTGTTTGATGATTCCACCCTTCAGCGGAGCCACAAGTAACCCTGACAACCCTGGACATTCTGATATGCACCTATAAAAGATGTCATCCTACATGTACAGGAAGATCAAATCACACTTAATTACTCGAACACCTACAAATAATCGGGTTTCTCTATACCTAGCCTGTCTCACATGATAACTCCTAACACGGTAGGGCGGCAGGTTTGTAAGGAGAGAAGGAATGAGCGGAGGTTGTGAGAAAGACGGACTtgaaaaggaggaggaagagaagcggtgGACTGTATGGACACTGTATCTGAATGGCAGATTGAAGTGGCATGCAGGTGAATCTCCTTTTGGATCGGACTGATATCTGGGACCTGTGACGTCTCTCGCACTTAGAAAACCTACACGACGTTGTACCTTTCCGTCTGGCCTAAAATATCCATTCCTTCGTATTTTGTTATGTTTATCTTATCTCTGGTGTAATTGATCCTGTAAAATTCTCTTTTTTTCTGTCAAACATGTGCACACATCAACCAACAAACTGACTAAGAGATTATGTGTATGATGATGGATAACATTCTCCAAGTACTGCTCTCCCCTTCAGTCCTTTGCGCTGTGTCACCCCTGTACAGAGGAACTTCTGGGTCGTGTTCACTAGAAATCAAACTTGATTTTGAAAAAAAATTGACAAATTGACAGAGGGACTATACCTGAACTTTTCCAACAAGAAATGCTGTTTTctttttccattgcaaaatgtaTCGCTACAGTGTGcgctaatgaatacaaccctgctTCATACGACAGATACCCACAGACCGGTTCAAGGAGAACAGAGAACTACAGTGGGAAAAGAAAGATGTGTTATGGGCCTATAGGTAGCTGTAGACTTGAAAACTGGTCTTAGAAATAATTATGGAACTGCAGACGTTAGTTCAAGCCTTTTGAAACGAAGAATGGTTTGGCATAGTACAATTATAAGGCTGTCAATGCTAATCATTGGCCAGACTAAATGGCTGCATTACAAAAGTCACCTCATTCCCTACATACACATATAAATAGGGAATAAAGTTCCATTAATTATGCATCTTAAATATCTGAAACTCATCATTGACTTTCTAATAATTtaactttaaaaaataaacaatttgtattttattttactgtTTCATGTACACATGCAGTGCATATGGTAAACCTGACCTGTTAAAGCTCTCTTATATAGCCATTATATTAATTATCATTATATATGGTCCCTCTATGCATGACTTGATGACACTGGGTTCTGCTGAAAAGGGATACAAGTCTATATGCATTTATGATTGTTATTCAAGTTTCCTGTGTAAACTTGCTTATGCTATCTAGATAACGTGAATGATTTCAAAGGAATTTGGAACCTCTTTTACAGAACTCTGAAACAGAGCAACCCCATCGTGTACACATATTTGTCCCCATGATTTGTGATGATGTTCATGTAAATAGCCACTGACGTGTACTGTACAGAGATGGCCAACTGTCACTAATGATGTATTTGTACACATTATTAGTCTATATTTCTGATTGCTGTGTCAAATGAACCACCGTTTGCTTTAGCCTAATGTGAGACCCAAATTGCACCCCAATCTTTTGTATCGTGCGTTTACTTTTTATGAAAGCCCGATAGGGCCTGGTCAAAAGGGTCGCactatagggaaaagggtgctcTTTGGAGCACACGAGTCTTTTCAGAAGTTGCCTATTGCCGTTGTCTCTCAGGAATGCTGATGTCATTAGCTCTTCTATGTACTTAACCATTTCTCTTACTCTCTGCCTCAACTCTCTCATACTGAATGAAAAGGTAGTCTGACACGTACTGTAACATGAATGATCTGTGGAtgtagttttattttatttgcccAGTTAGGCTTCAAGAACAATGTATGTGAGATAGAAAGAGGATTCTCTTAGAATGGACCCATCCGTTGATGTAGGCCTAGATGACTCGTGAAGTTGCTGAACATCAAACCTTGACTGTTTTACCACAtacctacaggtaactgccaaaataaagagaACCCCGAT

Function

NR:

description
neural proliferation differentiation and control protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606543.2 True 3268 mRNA 0.45 9 42252483 42301749

Neighbor

gene id symbol gene type direction distance location
LOC110525987 LOC106585210 coding downstream 11045 42146502 ~ 42241438 (-)
dph7 dph7 coding downstream 113428 42129218 ~ 42139055 (-)
ipo11 ipo11 coding downstream 128419 41889859 ~ 42124064 (-)
si:dkey-250l23.4 LOC106584965 coding downstream 483272 41759479 ~ 41769211 (-)
rgs7bpa LOC106585207 coding downstream 499523 41735103 ~ 41752960 (-)
LOC110525990 LOC106585213 coding upstream 1172 42302921 ~ 42360392 (-)
LOC118964871 NA coding upstream 103090 42404839 ~ 42417077 (-)
LOC110525992 LOC106585216 coding upstream 121662 42422990 ~ 42520495 (-)
noxa1 noxa1 coding upstream 238115 42539864 ~ 42549214 (-)
LOC110525994 LOC106585220 coding upstream 274780 42576529 ~ 42587286 (-)
G508888 NA non-coding downstream 108643 42142383 ~ 42143840 (-)
G508902 NA non-coding downstream 132092 42120186 ~ 42120391 (-)
G508899 NA non-coding downstream 136741 42115494 ~ 42115742 (-)
G508884 NA non-coding downstream 148969 42103030 ~ 42103514 (-)
G508882 NA non-coding downstream 150333 42101869 ~ 42102150 (-)
G509045 NA non-coding upstream 84324 42386073 ~ 42386706 (-)
G509034 LOC106585214 non-coding upstream 97227 42372441 ~ 42403220 (-)
G509058 NA non-coding upstream 116076 42417825 ~ 42418041 (-)
G509059 NA non-coding upstream 116362 42418111 ~ 42418353 (-)
G508891 NA other downstream 107598 42144097 ~ 42144885 (-)
G508303 NA other downstream 431273 41820855 ~ 41821210 (-)
G507906 selenop other downstream 790561 41421024 ~ 41461922 (-)
znf131 znf131 other downstream 813469 41431651 ~ 41459095 (-)
G507063 NA other downstream 1710154 40540659 ~ 40542329 (-)
G509432 NA other upstream 341770 42643519 ~ 42645869 (-)
G509902 NA other upstream 774943 43076692 ~ 43077157 (-)
G509949 LOC106578716 other upstream 820797 43122546 ~ 43123092 (-)
G509952 NA other upstream 822832 43124581 ~ 43125387 (-)

Expression


Co-expression Network