LOC110525994 (LOC106585220)


Basic Information

Item Value
gene id LOC110525994
gene name LOC106585220
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 42576529 ~ 42587286 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606553.2
TTGCCTTGGTTCAAAGGTTAATCATAACCAACACAATAGTATACTTGGCTAGCCGCTCGGCTCTTGGAGAAAGATAAACAACTCTTATTTGCGAAATTAACAGCACTCGACTGCTATAGCATTGAAGTCCGATCAAACTGTTTGAAAATCATAAGTGTAGGTGTTTGCACTATTGTCGCTGTTTTTCGAAggcgctagctaatgttagcaaacTAACGTAGCCATCACTGAACTGGCTCGCTAGCTATATAGTTACACACAAAACTACAGCTATGTTTGTGCAAGAAGAGAAGATATTCGCTGGAAAAATATTAAAAATCCACATTTGTACTATGGAGGGTACAGAGTGGTTGGAAGAAGTAACAGAGGATACCACTATTGAACAACTCAAAGAGAAGTGCTTGAAACatTATGTACATGGAAGCCTCGAAGACCCCAAAACAATCACACACCATAAACTTGTCCATGCTGCCACGGAGAGGATCCTCACAGAAACTAAAACGGTTGCAGATGAAAATCTAAAAGATAAAGATTTTCTTCTACTGATAAAGAAGAGACCACTGCCACCCCCTCCGAAAATAGCTGACATAACTGCAGAGGAAAAGAAGAAGCAGGATAACAAGGCTCCAGATAAAGATGCCATCCTGAAGGCCACCGCCGGCCTGTCCACCCGTCACACAGACCGCACTGTCACCCAGCATAACATCAGAGATTTTCAGACGGAGCTCAGGAAAATCCTTGTCTCTCTCATTGAAGTGGCCCAGAAGCTTCTCGCCTTGAACCCCGATGCTGTGGAGCTCTTCAAAAAGGCCAATGCCATgctggatgaggaggaggaggaccgggTGGATGAGACGACCCTTCAGCAGCTGACTGAGATGGGTTTCCCTGAGAGCAGAGCCATCAAAGCTCTCAGGCTCAACCACATGTCAGTGACCCAGGCCATGGAGTGGCTGATTGAGCACGTAGACGACCCCACGGTGGACACAACCCTGCCCGGCCAGGGCACCCCAGGAGCAGTAGGAGCCACAGCACCACCCCTGATCCCCTCTATCTCTGCCTCATTTCCAAACCTCCTCCGCACCGTCTCCCAGACTAACACAGATTCCGCCGCCAGGCAGGACGAACTCACTGAGATCTTCAAGAGGATCCGAAGGAAAAGAGAGTTCAGGCCTGAGTCACGGGCTGTCATTGCGTTGATGGAGATGGGCTTTGATGAGAAGGAGGTGGTCGATGCCCTGAGAGTCAATAACAACCAACAGGATGCTGCTTGCGAGTGGCTGCTGGGGGACAGGAAGCCGTCTCCGGAGGACTTGGATAAAGGCATCGACATCAACAGTTCTCTGTTCCAGGCCATCCTGGAGAACCCTGTGGTCCAGCTGGGCCTCACCAATCCCAAAACACTGCTGGCGTTTGAGGACATGTTGGAGAACCCTCTGAACAGCACCCAATGGATGAATGACCCTGAGACTGGGCCTGTCATGCTGCAGATCTCCAGAATCTTCCAGACACTCAACCGCacgtagagtgtgtgtgtgagagtgtgtgtgtgagagtgtgtgtgtgagagtgtgtgtgtgagagtgtgtgtgtgagagtgtgtgtgtgagagtgtgtgtgtgagagtgtgtgtgtgagagtgtgtgtg
>XM_021606554.2
TTGCCTTGGTTCAAAGGTTAATCATAACCAACACAATAGTATACTTGGCTAGCCGCTCGGCTCTTGGAGAAAGATAAACAACTCTTATTTGCGAAATTAACAGCACTCGACTGCTATAGCATTGAAGTCCGATCAAACTGTTTGAAAATCATAAGTGTAGGTGTTTGCACTATTGTCGCTGTTTTTCGAAggcgctagctaatgttagcaaacTAACGTAGCCATCACTGAACTGGCTCGCTAGCTATATAGTTACACACAAAACTACAGCTATGTTTGTGCAAGAAGAGAAGATATTCGCTGGAAAAATATTAAAAATCCACATTTGTACTATGGAGGGTACAGAGTGGTTGGAAGAAGTAACAGAGGATACCACTATTGAACAACTCAAAGAGAAGTGCTTGAAACatTATGTACATGGAAGCCTCGAAGACCCCAAAACAATCACACACCATAAACTTGTCCATGCTGCCACGGAGAGGATCCTCACAGAAACTAAAACGGTTGCAGATGAAAATCTAAAAGATAAAGATTTTCTTCTACTGATAAAGAAGAGACCACTGCCACCCCCTCCGAAAATAGCTGACATAACTGCAGAGGAAAAGAAGCAGGATAACAAGGCTCCAGATAAAGATGCCATCCTGAAGGCCACCGCCGGCCTGTCCACCCGTCACACAGACCGCACTGTCACCCAGCATAACATCAGAGATTTTCAGACGGAGCTCAGGAAAATCCTTGTCTCTCTCATTGAAGTGGCCCAGAAGCTTCTCGCCTTGAACCCCGATGCTGTGGAGCTCTTCAAAAAGGCCAATGCCATgctggatgaggaggaggaggaccgggTGGATGAGACGACCCTTCAGCAGCTGACTGAGATGGGTTTCCCTGAGAGCAGAGCCATCAAAGCTCTCAGGCTCAACCACATGTCAGTGACCCAGGCCATGGAGTGGCTGATTGAGCACGTAGACGACCCCACGGTGGACACAACCCTGCCCGGCCAGGGCACCCCAGGAGCAGTAGGAGCCACAGCACCACCCCTGATCCCCTCTATCTCTGCCTCATTTCCAAACCTCCTCCGCACCGTCTCCCAGACTAACACAGATTCCGCCGCCAGGCAGGACGAACTCACTGAGATCTTCAAGAGGATCCGAAGGAAAAGAGAGTTCAGGCCTGAGTCACGGGCTGTCATTGCGTTGATGGAGATGGGCTTTGATGAGAAGGAGGTGGTCGATGCCCTGAGAGTCAATAACAACCAACAGGATGCTGCTTGCGAGTGGCTGCTGGGGGACAGGAAGCCGTCTCCGGAGGACTTGGATAAAGGCATCGACATCAACAGTTCTCTGTTCCAGGCCATCCTGGAGAACCCTGTGGTCCAGCTGGGCCTCACCAATCCCAAAACACTGCTGGCGTTTGAGGACATGTTGGAGAACCCTCTGAACAGCACCCAATGGATGAATGACCCTGAGACTGGGCCTGTCATGCTGCAGATCTCCAGAATCTTCCAGACACTCAACCGCacgtagagtgtgtgtgtgagagtgtgtgtgtgagagtgtgtgtgtgagagtgtgtgtgtgagagtgtgtgtgtgagagtgtgtgtgtgagagtgtgtgtgtgagagtgtgtgtgtgagagtgtgtgtg
>XM_021606555.2
TTGCCTTGGTTCAAAGGTTAATCATAACCAACACAATAGTATACTTGGCTAGCCGCTCGGCTCTTGGAGAAAGATAAACAACTCTTATTTGCGAAATTAACAGCACTCGACTGCTATAGCATTGAAGTCCGATCAAACTGTTTGAAAATCATAAGTGTAGGTGTTTGCACTATTGTCGCTGTTTTTCGAAggcgctagctaatgttagcaaacTAACGTAGCCATCACTGAACTGGCTCGCTAGCTATATAGTTACACACAAAACTACAGCTATGTTTGTGCAAGAAGAGAAGATATTCGCTGGAAAAATATTAAAAATCCACATTTGTACTATGGAGGGTACAGAGTGGTTGGAAGAAGTAACAGAGGATACCACTATTGAACAACTCAAAGAGAAGTGCTTGAAACatTATGTACATGGAAGCCTCGAAGACCCCAAAACAATCACACACCATAAACTTGTCCATGCTGCCACGGAGAGGATCCTCACAGAAACTAAAACGGTTGCAGATGAAAATCTAAAAGATAAAGATTTTCTTCTACTGATAAAGAAGAGACCACTGCCACCCCCTCCGAAAATAGCTGACATAACTGCAGAGGAAAAGAAGAAGCAGGATAACAAGGCTCCAGATAAAGATGCCATCCTGAAGGCCACCGCCGGCCTGTCCACCCGTCACACAGACCGCACTGTCACCCAGCATAACATCAGAGATTTTCAGACGGAGCTCAGGAAAATCCTTGTCTCTCTCATTGAAGTGGCCCAGAAGCTTCTCGCCTTGAACCCCGATGCTGTGGAGCTCTTCAAAAAGGCCAATGCCATgctggatgaggaggaggaggaccgggTGGATGAGACGACCCTTCAGCAGCTGACTGAGATGGGTTTCCCTGAGAGCAGAGCCATCAAAGCTCTCAGGCTCAACCACATGTCAGTGACCCAGGCCATGGAGTGGCTGATTGAGCACGTAGACGACCCCACGGTGGACACAACCCTGCCCGGCCAGGGCACCCCAGGAGCAGTAGGAGCCACAGCACCACCCCTGATCCCCTCTATCTCTGCCTCATTTCCAAACCTCCTCCGCACCGTCTCCCAGACTAACACAGATTCCGCCGCCAGGCAGGACGAACTCACTGAGATCTTCAAGAGGATCCGAAGGAAAAGAGAGTTCAGGCCTGAGTCACGGGCTGTCATTGCGTTGATGGAGATGGGCTTTGATGAGAAGGAGGTGGTCGATGCCCTGAGAGTCAATAACAACCAACAGGATGCTGCTGTATGTTTTACTGTCCACACTGAGGAATAAAGGATCAAAGAAAATGAAGCACACACTTATTGATGCGAGTGGCTGCTGGGGGACAGGAAGCCGTCTCCGGAGGACTTGGATAAAGGCATCGACATCAACAGTTCTCTGTTCCAGGCCATCCTGGAGAACCCTGTGGTCCAGCTGGGCCTCACCAATCCCAAAACACTGCTGG

Function

NR:

description
ubiquitin-associated domain-containing protein 1-like isoform X1

GO: NA

KEGG:

id description
K12174 KPC2, UBAC1; Kip1 ubiquitination-promoting complex protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606553.2 False 1648 mRNA 0.50 10 42576529 42587286
XM_021606554.2 False 1645 mRNA 0.50 10 42576529 42587286
XM_021606555.2 True 1473 mRNA 0.49 9 42576965 42587286

Neighbor

gene id symbol gene type direction distance location
noxa1 noxa1 coding downstream 27315 42539864 ~ 42549214 (-)
LOC110525992 LOC106585216 coding downstream 56034 42422990 ~ 42520495 (-)
LOC118964871 NA coding downstream 163278 42404839 ~ 42417077 (-)
LOC110525990 LOC106585213 coding downstream 216137 42302921 ~ 42360392 (-)
npdc1b LOC106585212 coding downstream 274780 42252483 ~ 42301749 (-)
LOC110525997 LOC106585221 coding upstream 67698 42654984 ~ 42729594 (-)
LOC110525998 LOC106585223 coding upstream 179253 42766320 ~ 42788488 (-)
zgc:101858 LOC106585225 coding upstream 404763 42992049 ~ 42997858 (-)
LOC110526002 LOC106585226 coding upstream 418284 43005570 ~ 43018519 (-)
LOC110526003 LOC106585228 coding upstream 1102018 43689304 ~ 43813410 (-)
G509342 NA non-coding downstream 1707 42573996 ~ 42574822 (-)
G509341 NA non-coding downstream 5080 42567053 ~ 42571449 (-)
G509296 NA non-coding downstream 129946 42446355 ~ 42446583 (-)
G509292 NA non-coding downstream 143581 42432713 ~ 42432948 (-)
G509286 NA non-coding downstream 148400 42427834 ~ 42428129 (-)
G509480 NA non-coding upstream 152704 42739990 ~ 42740374 (-)
G509483 NA non-coding upstream 158778 42746064 ~ 42746279 (-)
G509487 NA non-coding upstream 162236 42749522 ~ 42749918 (-)
G509489 NA non-coding upstream 165911 42753197 ~ 42753503 (-)
G509496 NA non-coding upstream 174680 42761966 ~ 42762227 (-)
G509034 LOC106585214 other downstream 173309 42372441 ~ 42403220 (-)
G508891 NA other downstream 431644 42144097 ~ 42144885 (-)
G508303 NA other downstream 755319 41820855 ~ 41821210 (-)
G507906 selenop other downstream 1114607 41421024 ~ 41461922 (-)
G509432 NA other upstream 56233 42643519 ~ 42645869 (-)
G509902 NA other upstream 489406 43076692 ~ 43077157 (-)
G509949 LOC106578716 other upstream 535260 43122546 ~ 43123092 (-)
G509952 NA other upstream 537295 43124581 ~ 43125387 (-)
G510310 NA other upstream 936428 43523714 ~ 43524108 (-)

Expression


Co-expression Network