LOC110525996 (LOC106585219)


Basic Information

Item Value
gene id LOC110525996
gene name LOC106585219
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 42646034 ~ 42655499 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606561.2
ACCTACAATACATATTTGCACATTTACATATATTTTTGCATGCCCTGTTTGCACTCCCACACCATTTACCTAGGGTTATTGATGGCATCTTTCACTTAAATTGAATATCAAGAACATCTAAAGTTTTTTTTTCCACCGGTGCTGAGCAAAAATGATTAATAAGTGAAGTTAAACCCAGATCACAAGTAACCTACAAGGGTGTTAGTGAGATGTGCTGCTATCCTCCAAGCCTCCCTGGTGTTAACTGTCTCCCACCACCCAACTGGAACAACGGTGCCCGGCATGCTTCGCTTGCAGCAGGACTCATAACCATGAAGCAAACCAGATGCCTGGCATTTGAGGCCACTTTGAATTCATCATGAACGTGTCTGCTGCTGGCCTTTCTGTGATGATGCTGTGTGGGGTTCTGGTCTCGGTGCGCGCCAACATTTGTGCTCAGGAGGTACAGATTTACATCTGTCAAGAGATCCCACAAAGTTACCCTGTTGGCCTGGCCTCTCTGGTGCTCTTTGTAAGTAATGTTGGAGCAATCAACCGTACTGTGTTCAGTAGTGACAACCTGGCCTCAGTCACCCGCCTCACCATTAACAACGCTGGTATCACCAACATTGCATCCAGAGCTCTCTGGTTCTTCCGTGACCTCAAAACCCTCAGCCTGGACCACAACAACATCTCTCAGCTCAACCCAGCCTGGTTCAGCCAACCAGCCATCCTCCAAAACCTCACCCTAATTCAGAACCATATTGAGGTTGTAGAGGACTCCATGcttagtgggttaactggtctaatTAGCCTAAACCTGACCAGGAATATGATCCAGAGCATTGCTCCTGGTAGTTTTAGCACCCAGTCCCATCTGGCCAGTTTGGACCTGTCTGGTAATAGGATCGTAACCATCAGTCCTGGTAGTTTCAGTGGACTCACTGGCCTAACTAGTCTCAACTTGGCCAGGAATATGATCAAGACCATCAGCCCTGGCTGTTTTAGCGCCCTGACCAGTCTGGCCTACTTGGATCTGTCAGGTAACAGGCTGACCAGGGTTAACCCCCAGGATCTGCTCCCATTCTCCCCCTCCACACAGATCAGGCTGGATGGCAACCCCTGGGACTGCTCCTGTGGAGTGGAGGACTTTGTCATCTTCCTCAGAGGTCTGCAGAATGCCTCTCtgctggagagggagatggaagtgACGTGTGTCAGCCCTTCAGCCCTGAGAGGCCAGCCTGTGTGGAACGTGTCCAAGTGTTTGATATCTAACCCACAGCCTCAGGAGGATACCCACATACAGCCCCCAGCCATGTCCATCACTGTCTCCACACTCATAGCAGTGATCGTGGTGCTGTGTATCCTGATCTGTGGGGTCTGTGCCCTGGCTGTAGTCTGGAGGAGGAAACGTGAGACCAAACAGGTGAAGCCCAGTCTGGAGACAAAACGGGAGGAGGAAGCCGCAGAGCAGCCAGACAGttccaccaccaccctccaccgACAGGTGGCTTCTTCAATGTCTGACTGGGATCCAGAGCTTGCTGCAAGGACTTACAGATCTGGAGTCAGAGCCAAGTCTGCTGATGCTGTCCTCTCCACGTCCCAGTtctgcagagcagagagagaagcacaCAGGGTGGTGGTGGAGACTGAGCGAGAACTATACAGGAcggaaagtgtgagagagagcccGTTAAAAGAGATGAAGAACTCCGAGGAAGAGAACAGCAAAGAGCCAGGAGATAATGAGTCCCAGGGGGTAGATAGAAACCTGACAGGAAAAGATGATATTAAGGGTGAAGTGAGTcaggaaaaggacagagatgagagagatgatgATGGAACTGTGAATCTGCAAGATGGCGGCCAAAACATAATATGTGTATCCCAGGATTCGGAGACCATACCGTACCTGACAATCGGTGCTGACCCGGCCGAACCAAACATTGAACGCCACAAAGGTCCAAGTCCACAGAAAGTCATGACAAGGATTTCCACTTGGCCCCCCACCTCAGCTCAGTGGCAGACCCACTTTGCCATACAGAGAGAGGGGCTCTGTGTCTTCCCTGAGAATGACCCTGGCCAAGAGGTCGAAGGTGAAACAGAGAACCAATCACCTGACCAAGAGTTCGAACAGATCCAGTCACCTGACCCCGGGGAAACCGAGAACCAATCACCTGACCTTGAGCAAGAGTTTAAAGATGACACAGATAATCGTTCAGCTGATGTTTCTGTCAGTGTTCTGGAGTCTTCACCCCCAGAAGGGGTGATGGGTGAGGTCAATGCTGAGGAGAACTGCAGCACGCCACCAGACTTAGAGACATCCTCTCCAGAGTATGATCCAGAACCTCTTATTGAGATAAGCGAGACCCTGTCAGGGAAGTGTCGACCAGGTCTGTCTAGTAATGTCCTGACCCAGACTGAGACCAATCCTGGTCAAGAAAATCCTGAAGAATTGGATAACAAACCCACACAAATTATAAACAGGGCTGTACAGAGTGAAGGCAAATCAAACAGAAAGGGGGTGCCAAAGAGAGCAGTCAGGAGCAGAGAGAGTAGTGGAGCTCCCCCTAGTGGTGTCTCCCCCAGTGACGACAACCTGCTACTGGATAATGAATACGCCTATATTGACTTGCTGCACGAGGTGGTTCAGAACCAGGGCCGATGgaccagagagaggtggaaacaGACTCACCTCAACAAAGCAGCAAGCAAGCACCAGGGACATTAAACTACAGACTGTGGCTTTTATGATCTGGTGTTGTCTTGTGTTTTTACTTGTCCTGTCTATTGGTGTATGTAATAGTCTGTAGTGTTTTGAAAAGTGCTATGcataataaaatgtattattaactGTGTTTTTCCCCTTTCCTGTGGTGACAAAGGGTGAGCAACCCCACCATTAGAAGTGTTTGAGTGATCATTTCTCTCTGTAATTAAACTACAGGAGTGTTTTTCCATTCCAATGTTTCTGGCTGCATGCAGCATTTATTGTTCATATTTTACATCACGGTAGAGAAGTACACATACTTCGGAATAAGAAAAAGTACAAAATGGGTAAAA
>TU577966
ATGTTTCTGGCTGCATGCAGCATTTATTGTTCATATTTTACATCACGGTAGAGAAGTACACATACTTCGGAATAAGAAAAAGTACAAAATGGGTAAAACCTTTTTGACAATTAACTAAAAATATGATAAAGGTAAACAGAAGACTTTGGAGGACATGCATGGTCCCGTATGCAGACAAATAACAAGCGGGAGATATGATTAGTTTTCTAGTTGTGATTCTTCACACAGGTCACCTAACTGTAGGAAAACGTATCTGGTTTGGCAAACTTTCTCTCAAAACATGCTTTTTGTGTTTGCATGCCCCTTTCTATATTACAGTATGAacttcaaaaacatttttttctgaaCAACTCCAGTAAGATAATTCCCCTGGAGTTTCGTTCACATACAACAACGATGAGGTGTCACGAGGTGATCTGTAAACTGCCCTTCTGGGGGCCTGGCTAGTATGGAACATATCTGatctacacatacatacagtacttcaATGGGAATGGGGACACATTGCGTTACATCCCAAAACACATCAAGGACTACTCCAGAGATATTCAAACTGCAAAATAATCTAAAAGCCTGACATAACCCACTTTTTTCCTTATCTAACCTTTCCATCAACTTAATCTCATTCAGGCAATGCATGTTCAGAACTACTTCCCTAGTACATTTTATAACAAACAAGCAGAAATGgcacatatcaaaatatattctgTTGTTTACAAATGACAATGATCATTTAAAACATTGCAAATGTACTTAACAAAGgcctagggctctattcaatctttACAGCTGAAGCGTTAGACTCCGCGGTAGAAATGttaaggtaatttccgattgcgccgccatatgcagtgtttaccggTGAATGCCGTCTCCGCTAAATTGGGAATAGCCAATGTCCTCTTTATGTATCCCTGTAGCTGCTTGTGGTTTTGATAGCTCTAACACCGGAAAAACAACCGCTATGCGGATGTCGTCTAAAGCGGATCGGATTGAATACAGCCCTTTAAAAGTTGATATACTATATATAACACTGACTGTATGGAGGCTGATTCATACTGTGCAAATACTAAAGTATTTTATTGTATAGTTAACGTTTCGGGTTAAAGGGTCATGCTATAATGCTCTATTAACGACCACAGAGCTTAGTGCAAAAATATTTCAAGTCCCATTTGTTTTCATTTGACTAATAATGACCAGAAGAACGTTGAACCAAACAATGAGGATAAAGAAAATGTTTACAATGATATCACCACACATATTAGTCCAAGCAAACAGTATCAGAAATACAACAGATAAATATCTTAAATAATTATTAAAATATATAAAGCACACACAATACTACATTTACTGTACAAGTGAAATTACATATTGGAAGGCAAGCTTGCAACACTGCACTCCAAGCCCAGGTACTGGCCATATTAACAGACTTCAAGTAATAGTTCACTCCAACTCAACATCAGATTACTTTTGATATAATTTTGGAGTGACCTATCACTTTAACTATGCTTGTCTCTTATTGTGCAATATAAGTACTCATAACAAGTGTTCATAACATAGGGTTGCCACTGTAAACAGCTCTGAAAGATTGTTTTACTGTAATTAATCAAATCCTGTCAGAAATGTGGAATGAAAGCATTGGCTTTCGTAGAACATTGACTGATACATAAAGAACCAGAAACTGTATGGCACAAATAGGTGCATGGCGTAATTTATTAAGGTTCATCCATCCATTAAGTATTCTATACTTTTTAATAACAAATAGCATGATAtttgaaaaaaacatttttatacaGAATGAGCAGTAAAAGATAGTGTTTAAAAAAATTGCTTATAAAAGTCTTCACACTGTTTTTTacataatttcaatgaaattacgttgaaccaacgtggaatagatgttgaattgacgtctgggCCCAGTGGGTTGTGCTCATAGGGAAAATAATAAGTTCTCATGTACTTTCATGATTGATGTGTAAGAATACTGCCAGGAATTCTTGTTAAGGAATAACATTTTCTGTACATGACTTGATTTTGCAACTGATATTcacacagtctacacacacacatgccaagtGTGCTTGGTGTAGCTCGCAGGTGCGCCATTTGGGCAGAGTTTGCCCTTTTGACACCTTTCTATTGGTGCTAAAGTGTAAGCAAGCTCCACCCACCTAGTATGCCGACGAGCTAAATCAAACAAACCTCTAAATATTCAGAGCATCACATGACCTCCAACAtaatctgtctctcctctcctttggtTGGTTACCAGTATGTTTCCATCGACTGGTGCATTGTTCATGTTTTATCTTTTGCAAAGAGGGCAATGTCTGAGTCTGTGTGTCTGATGCTCTATAAGAGGTTAGGTAATGACGAGGCACTCTTCATGCATCCTCCCATAGCAGCTCAGTGACACGTGTCTCTCTGTAAGTCTGACATAGGGTGAAGGGGGATTGGAAGGTAAGGGTGGGCAAGGCCAGTGGGGATCTTCCCCTTGTATGGCACAAATAGAATGTATCGTGCAAAGGCGGAGAGACAAGGGGGCAAGAGGTCCGGCGGTGGAGAGACAAGGGGGCTAGAGGTCCGGGGGTGGAGAGACAAGGGGGCAAGAGGTCCGGGGGTGGTGAGGCGCGGGGATTTCAGAGGTGGGTCTCATCCCTGGTCTCTGTGCCAAAGTCCTGCCTCGTCTGGCCGCCGCCGCTGCTCTGCCCCTGAGCCGCATCCTCGGGCACGTCAGGCCCTGCCAGCGGGTCGGACCG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606561.2 False 3048 mRNA 0.49 7 42646034 42651728
TU577966 True 2762 lncRNA 0.40 2 42651631 42655499

Neighbor

gene id symbol gene type direction distance location
camsap1b LOC106585218 coding upstream 130 42603308 ~ 42645904 (+)
stxbp1b LOC106585214 coding upstream 230926 42372531 ~ 42415108 (+)
LOC110525988 LOC106584966 coding upstream 396768 42244505 ~ 42249266 (+)
paxx ci142 coding upstream 502426 42137053 ~ 42143608 (+)
htr1aa LOC106585208 coding upstream 872079 41771717 ~ 41773955 (+)
LOC118964872 NA coding downstream 127533 42779261 ~ 42780791 (+)
LOC110525999 LOC106585222 coding downstream 158586 42810314 ~ 42825158 (+)
LOC118965026 LOC106585222 coding downstream 178083 42829811 ~ 42836106 (+)
col27a1b LOC106585224 coding downstream 202059 42853787 ~ 42992257 (+)
LOC118965079 NA coding downstream 372135 43023780 ~ 43024698 (+)
G509164 NA non-coding upstream 57666 42578219 ~ 42588368 (+)
G509163 NA non-coding upstream 69136 42576553 ~ 42576898 (+)
G509161 NA non-coding upstream 72635 42570559 ~ 42573399 (+)
G509148 NA non-coding upstream 96808 42548231 ~ 42549226 (+)
G509080 NA non-coding upstream 200597 42445230 ~ 42445437 (+)
G509252 NA non-coding downstream 78192 42729920 ~ 42730149 (+)
G509256 NA non-coding downstream 82866 42734594 ~ 42734857 (+)
G509260 NA non-coding downstream 90286 42742014 ~ 42743213 (+)
G509266 NA non-coding downstream 98303 42750031 ~ 42750268 (+)
G509267 NA non-coding downstream 99680 42751408 ~ 42751614 (+)
G509160 NA other upstream 75865 42567105 ~ 42570169 (+)
G508559 dph7 other upstream 514094 42129225 ~ 42131940 (+)
G507768 LOC105030512 other upstream 1174626 41469551 ~ 41471408 (+)
fbxl17 fbxl17 other upstream 1786512 40568637 ~ 40886427 (+)
G506285 NA other upstream 2079605 40566067 ~ 40566429 (+)
G510416 NA other downstream 1005740 43657468 ~ 43658493 (+)
G512192 LOC106584908 other downstream 2532711 45184439 ~ 45185869 (+)
LOC110526028 ccdc60 other downstream 2565999 45187119 ~ 45236944 (+)
G512912 NA other downstream 2983861 45635589 ~ 45636250 (+)
LOC110526042 LOC106584891 other downstream 3535272 46076084 ~ 46190292 (+)

Expression


Co-expression Network