LOC118965026 (LOC106585222)


Basic Information

Item Value
gene id LOC118965026
gene name LOC106585222
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 42829811 ~ 42836106 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981749.1
ATGTTTCTCCCAGCCAAACCAGAAACCAAACCAAAGAAGGCTGTGAGGAGGAGAACTAGGAAGAACCTGAAGGACGGGAGCACTGGTAGCTGGTCTGCAGACACTGAAGATCCTGCTTGTACCAAAGTGAAGGAGAACGTGAAGGCAAGGAAGCCCAAAAGACGCAAGAGCCAATCCCATCAAACAAAAGACATCAAGGACACTGCcaatgagagagaggacagcaaggCTCCAGCCAATCACAGAGATGACAGCAAGGCCCTGGTTAATGAGAAAGAAGACGGCAAGGGGTCAGGGTTCACAGGTGAGTGCGAGGACCTATCCCTGTCTGGCCCAGAGAGCAGAACACACCAGAAAAAGACCAGACAAGTTAAGAAGACCccagagaaagacaaagacaaTGCCAAGACCCCACAAAAAGAGTCCAATAACAGAGTCAACATCCTTGCTGTACTGGAAAGGTGGCGTCTGGAGAAGAAGTTGTCATCTTGTCCCAACCCCTCGGGCTCAGATGTGGAGCTAAGTGAGGAGAGTGACAGTGCTCTGCACCCTGACAGGCAGCCAGGGGACCAGGACCGAGCTGTGCTCAACACGAGTCAAACACACATCTCAACGATAGAACAAGATCTACAGGCCCAGctGGATGTGATGATGCAGGTGTTGAACACGTCTGACGAGGTGGAGCAGCTGGTGCTGAGGAACACCGGCTTGACAGACGCACTCCTACTGAGCCTGGCCGCAGCCCTGAAGAGGAGCCCCTCGGAGGTCACATTCCTCAATCTCAACCTCAACCACATCGGACCCCAAGGGGCCCACATCCTCCTGGACCTACTGAGGGCCAAGCCCCAGGTCAAAGGACTGCTCTTGTTTGGAAACCAACTGGGAGACCCTGGAGTTCTGAAACTACTTAGTGGACTGGCTCAACTCCAGGAGATAACAACGAGACACCCAACATCACTACCATGGATTGAAGATCCCCAGGTCCAGGGCCAGAACCCGTTAACACACTCAGTTGTCCCCCTCCCTCCAACCACAAGGGGCACTCTCTACCCCttttcactgttggagctggacATAGGAGGAAACGGGCTGAGCAGCAATGGCCTGAGGATGTTGACATCCTACATGAGACTCCACTCAAGACTGCAGTACCTGGGGCTGGCCCGGACCACTGGTGTGGACCTAGAGGCATGGCGGGAGCTGTTTGACTCTCTGAAGGGAAATGTGACTCTCAGCCATATTATCCTGGATGAGAGTAACCTAGGAGACCAGGGAGCCAGGCTATTTTCTGACACGCTGAGAGCCAATCAGAGCCTGAGGCAGGTGGATCTGGACAGTAATGGGATTGGTGAGGTGGGAGGAAGTGAAATCATAGAGGCGCTGCTTTGTAGGACACAGTTTCCGCTGAGACACCTGAGTCTGGAGGGGAATGGTATCAGCACTGGACTAATGGGTAGAATTCAACAGGAAGTGAGATTTAACTGACagaaacatgttttaaaaaaaaaaaaattttataCATATTACAGAACTGGAATTTATCCAAAATGATGAACAAGGTAGGGCACAGCGCATAGCACAAAAGAGGAACAGTCAAAATAGATGTTGCGGAAAATACTAAATAATATGGATTTGTCTGACTATTTCTACACAAGATCAGCATCTAGCTACTGTACACGAGACTAGACTATTCCTCACTGTTAATAAATTACTTCTCACATCTATGTTGAATCATCTCAATTGGAGCTCAGTCAGTGTAAATTGCAGGTCAGTGGAATAAAACTGGAAAAACATTTGACTCTCTTTGCCAACTCACATGGAGGGCCTTTCCCTCTGCTACTGGTGGCCCTGATTTAAATATCTTTGTAGAGCTCACAGACATGGCCATCAGCTCAGCAGGTAGGAAGGAGTGCGCTGGGATTTAGCTAGGCTGCTCTGTGGTATGGATGAGACGTCAGAGAAAAGCCCTGTAAAGTAAGTCTTTCTTCCCAGAACCTGTGGTGAGGCCAGGCCAGGATGTTTACCTTGTGCTATTTTCTTCCCACCCTGATTTATTCACAAATGCTGCCCTCAGGACCACACTCCCCTCCTTGTTGACGCTTGTTATTCCCTAAAGTTTAGTATTCCCCTGGAAAATGTGGAGAAATATCCATATCTCGTAACCATGGTGATGCAAACATGAAGTGGCACAATTAAACAGTACTTCCTATTAGATACAGTAAAAATGTATTTCTACAGTAtctactgtattttttttaaaggcaggaATGAAGAAAATCGAATAAAAAAGAAATATATC

Function

NR:

description
uncharacterized protein LOC110525999

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981749.1 True 2299 mRNA 0.48 4 42829811 42836106

Neighbor

gene id symbol gene type direction distance location
LOC110525999 LOC106585222 coding upstream 4653 42810314 ~ 42825158 (+)
LOC118964872 NA coding upstream 49020 42779261 ~ 42780791 (+)
LOC110525996 LOC106585219 coding upstream 178083 42646034 ~ 42655499 (+)
camsap1b LOC106585218 coding upstream 183907 42603308 ~ 42645904 (+)
stxbp1b LOC106585214 coding upstream 414703 42372531 ~ 42415108 (+)
col27a1b LOC106585224 coding downstream 17681 42853787 ~ 42992257 (+)
LOC118965079 NA coding downstream 187757 43023780 ~ 43024698 (+)
LOC110526005 LOC106585229 coding downstream 1120071 43937835 ~ 43981885 (+)
LOC118964874 NA coding downstream 1156727 43992833 ~ 43995155 (+)
LOC110526008 NA coding downstream 1422990 44259096 ~ 44260124 (+)
G509500 NA non-coding upstream 63463 42766120 ~ 42766348 (+)
G509272 NA non-coding upstream 72840 42756766 ~ 42756971 (+)
G509267 NA non-coding upstream 78197 42751408 ~ 42751614 (+)
G509266 NA non-coding upstream 79543 42750031 ~ 42750268 (+)
G509260 NA non-coding upstream 86598 42742014 ~ 42743213 (+)
G509697 NA non-coding downstream 134450 42970556 ~ 42970917 (+)
G509700 NA non-coding downstream 137668 42973774 ~ 42974022 (+)
G509719 NA non-coding downstream 165626 43001732 ~ 43002009 (+)
G509160 NA other upstream 259642 42567105 ~ 42570169 (+)
G508559 dph7 other upstream 697871 42129225 ~ 42131940 (+)
G507768 LOC105030512 other upstream 1358403 41469551 ~ 41471408 (+)
fbxl17 fbxl17 other upstream 1970289 40568637 ~ 40886427 (+)
G506285 NA other upstream 2263382 40566067 ~ 40566429 (+)
G510416 NA other downstream 821362 43657468 ~ 43658493 (+)
G512192 LOC106584908 other downstream 2348333 45184439 ~ 45185869 (+)
LOC110526028 ccdc60 other downstream 2381621 45187119 ~ 45236944 (+)
G512912 NA other downstream 2799483 45635589 ~ 45636250 (+)
LOC110526042 LOC106584891 other downstream 3350894 46076084 ~ 46190292 (+)

Expression


Co-expression Network