col27a1b (LOC106585224)


Basic Information

Item Value
gene id col27a1b
gene name LOC106585224
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 42853787 ~ 42992257 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606572.2
TTCTTCTTTACACCATTCATGTGTGTTACATTTGTTTCCTCCTTCAGTATCAGCTGAGGCGAAAGAAGGAGGTGTGTTTCTCTGAGTCCCGAGCAGAGAATTCCCTCACTCACTCCATGATATCTTGTATATTAGAAACGTCGGCGTACAAGGCGGTCACCATACATTCATTTCACCGTGCTCGTATGAGTGTGTAAGATATTGTACTTCTCCCCACAGACATTTACCTGGAGTCGGTTCTTTCGCGCGGAAAAGTAACACTCCGATGGAGCTCTGTAGGTCGAAGTTTCTTCTATGTAAAGAACTCCTGAAGGAAGATAACGGAACGACATTGAGAAAGAAGGAAGACACTTTATTGATCTCTTATTACCGGTGCTTTTTTGGTTCCCTTTCGAAGTTTTAAGGACCAGCTGCAATGGAAATGATTTGCGTATGTCTCCTGCCACTCTGGACCGTTGTAAAAACTCTCAAGAAAGAATGAAGTAACCGCTATGGAGCCGGACAATGCCCTGTACTCCAAACTCAAAACAGCTGGAGTTGGGGGgAGAACTCTGATACTCTGGACTATTCTCTATTGTACCTGTTTCCTGGGGCTAGCTCAAGCACACCCTGAAGATGTGGATGTCTTACAGCAGCTGGGGCTCACAGGGACAAGGAGCGGAGGGGGTTCATCGTCCTCAGGGGCCCGTGCTGCTCCCCAGGGGGTCATCCCCTTTAAGTCTGGGGTCATCCTCACTCAGCGGGCCCGGGTCCAGGCCCCCCTGTCTTCCATCCTCTCCACTGCCTCCTATCCCACCACCAACCTCTCTCTGATCCTCAGCCTGAGCTCCCACCGCATCAACAGCGCCTTCCTCTTCACCGTCCTGTCCAAGAGGAAGAGACTGCAGCTGGGGGTCCAGTTCATCCCGGGGAAGGTCCTGGTCTACGTTGGCCAGAAGGACTTTGTCCATTTTGACTATGACGTTCACAACGGCCTGTGGCACAGCCTGGCCCTGGACATCCGAGGCCAGAGGGTCTCGTTATATACTTCTTGTGGGAAGACTAGTGTACATGCAGATCTGCATTCTAAAAAAGAAGAGGCCCTGGATCCCGAGGGCTCTTTCCTCTTGGGtaagatggcccagaactcagtGCAGTTTGAGGGTGCCATTTGCCAGTTTGATATTTACCCCTCTGCCAAGGCAGCTCATAACTATTGTAAGTACATAAAGAAACACTGCAGGGAGGCCGACACCTACAGGCCTGTAAATCTCCCACCCCTGCTACCTCTGATCCCCTCAAACCCAAACTTTACTGTCACCCTCAACACTCCTCTGCTGTCGACTGAGGTAACCAGGAAAGTCCAGAGTCCTAGTCTGGTCTTGACTGGGGACAGAACCCGGACTAAGCTTGTTGTCCCGACCAGCCGCCCCACAGTGGCGCCAACCCTCTCTGTGCGTGAGAGTTTTGTCACACCAAAGTCGGGAACTATGTCCCTGTCCCTTCCTGCGACTGTCGCCCCGACAATGGCCAGGCCAGGATTAGAGCACCCCTTAATGGCCAAGACTCACACTGTTACTGTACCCCTCAGGACCAGCGGAACACaaacatccccaaagccaacatccCGTGGCGACAGCAGTGCTAAAAAGAGCATGGCGGTGGAACCTGGTGTTAAAACCCCAAAGCCCATAGGGAGCAGATTGGCTGCTGCACCAACCCTTTCCGTCACCACCCGGCCACTAAAGAGGAAGCCAGACCTCCAAACCACGGCAGCATCCAAACAAGGCTCTTCTTCAAACTCAAACACCTCCATCCTCTACATCCAGAGAAAGCAGCTGACCGTGCTAGCTGCAAAGAAACCTGAGCCCAGAGTGACCAGTGTGGAGGCTGTCAGACCCACCTTGTTTATCTCTGTCACTCCGCCTGCCACGGATGGCTTCCAAACCTGGGACCTGGAACCGACCCAGTTCTCACTGCTGGCTGGGCCGGGACCACCTGGACTAAAGGGAGAACCGGGACCAGCgGGACTTCAAGGACCTCCTGGGAAGCCAGGGATGCCAGGGAAGAGTGGGTCACGGGGTCCTCCTGGTCCCCATGGAAACCCTGGTCGCCCGGGACCCCCTGGACTCAAGggACGAAAAGGAGACCCTGGCCTTTCACCTGGCAGAGCACCAAAAGGAGAAAGAGGAGACCGTGGTGCTTCAGGACCCCCTGGACTGACTGGTCAAGTTAGCAGAAAGGGACAGAAAGGCCACCCTGGTCCCCCCGGTCAACCAGGAGATTCTgGTGAGCAAGGAGCACACGGAAGCCCAGGGGCCAAAGGTTATCCTGGCAGGCAGGGTTTACCTGGACCTGTTGGAATTATGGGGCCTAAAGGAGTCCGGGGTTTCATAGGAATCGCGGggctttttggccttcctggacCTGATGGTGAGAGAGGTATTCCTGGTGATCGTGGCAAGAAGGGCAAGATGGGTAGGCCGGGGTTTCCCGGGGACTTTGGCGAGCGGGGACCACCAGGACCAGACGGAAACCCAggcgaGCTGGGAGCCCCTGGTCCTAATGGAGTGCCCGGGCTCATTGGAGACATGGGTCCTTTAGGGATGATGGGTTTGCCAGGACCATGTGGACTCAAGGGGGTACCAGGAAATCCAGGAGAATCAGGACTGAAAGGTGATAAGGGTGAAGTTGGTCTTCCAGGGGAGCAAGGAGAGAATGGATTCCAAGGTGACAAGGGTATCCAGGGTTCACCTGGGTTGCTAGGTGTTCAAGGGAAACCAGGGCAACAGGGGGTGACCGGTGACCAAGGACCTGATGGTATACCTGGCCCTCCTGGCCAAGAGGGTTTCCCAGGAGACATCGGCCCACCAGGTCACAACGGCCCTGAAGGCCCAAAGGGGAAGCCAGGGAACAGAGGTTTACCAGGGCCTAGAGGAACAGCTGGACTAGAGGGCGATGAGGGGCCACTGGGACCACCTGGGTCAACAGGACCAGAGGGCAGACCTGGAAGGCATGGATTCCCGGGGGAAACAGGAACCGAAGGATTGAAGGGTGAGACGGGAATAACTGGAGAGGTCGGAAAGCTTGGAGAGAGGGGACTTGTGGGTTTTATCGGGCCTAATGGGGAGACAGGCCTAGCTGGAGAAAAGGGGGACCGTGGGGAGATGGGCTTGCCTGGACCGCCAGGGGAAAAGGGGGCGATGGGTCATCCCGGAACTCCTGGAGAGTGTGGCCCCTCTGGACCTCTAGGGATACCAGGCCAAGCCGGATCAAGGGGTCTCGGTGGGATCAGAGGAATCAAAGGCAGGAGGGGTCCGAGGGGTCCTGATGGTCCAGCTGGGGAGAAGGGGTCAGTTGGCGGAAAGGGTCCTGATGGTCCACCAGGAAAATTTGGCTTCCCAGGGGAGATGGGAAATATTGGGGAGCCCGGGGAAGCTGGGCCTAAAGGATTTCCAGGTCGCCAAGGACTCTCAGGACCTCCGGGTGCCAAAGGAATAGCAGGAGAGCTGGGACCAACTGGGCCACCAGGAACAATGGGTCCCCTGGGACAGATGGGCCTCAAGGGTCCCCCTGGAAAGGTTGGGGAGTGGGGATTGCCAGGAGAACCCGGAGAGAAGGGTGCCCTTGGACCAGCGGGAAACCTCGGAGAGCAGGGCCTCATCGGACAGAGGGGTGAGATGGGAATCGATGGGGAGGCTGGACAGAGTGGACCAGATGGACCTAAGGGCGAGAAGGGTGACATGGGACCGGAGGGgggtaaaggagagaggggtgagatcGGACTGAAAGGAAAGGAAGGGTCTCCTGGACCTCCTGGCTTAGTGGGCTTGAGGGGTCAGGAGGGTAAACCTGGCAAATTTGGTGAAAGAGGAAAACCAGGGGAgaagGGCAGCAAGGGTCATATGGGTCACCTAGGAGAGACTGGGCCAATTGGTGAACAAGGAGAGGCAGGATTTGTCGGGCCGAAAGGATCGAGAGGAACCATTGGACCAGTGGGTTCCCCGGGTAGAATGGGCCAACAAGGCGAACCAGGCATGCCAGGATATGAGGGCCACACAGGACGACAGGGCACACTGGGACCTCCTGGACCAAAAGGTGAAAAGggggaacagggggaggaCAGTAAGGTGGAAGGCCCTCCTGGTCCACAAGGTGACAGAGGTCCTACTGGAGACAGGGGAGTCCGAGGAGAACCAGGTGACCCCGGATACTTAGGCCAGCCAGGACTGGATGGAGAAAGAGGCAAGGCTGGAGCAACTGGACTACCTGGACATCCTGGATCAAGGGGAATACAGGGGCCAAAAGGATCCAAAGGTGATCAAGGTCAGAAAGGCAAATGGGGGAAGCGAGGTGAATCTGGGACCAAAGGACCACTGGGTCCAGAGGGTCATCCTGGCCCAAAGGGAGTTGTGGGCAGAGAAGGCCTTGAGGGCCAGCCTGGAATGGACGGCCATCCTGGGAAAGACGGAGACAAAGGAGTAAAGGGTGAGCAAGGGGACGACGGAGAGTTTGGTATTATCGGCAAAGCTGGAAACCACGGTAAAACGGGCGTGCCAGGGCTTCCAGGAGATCAGGGCCTCTTTGGATCgaagggtgaGAGGGGTCTCCCAGGCCAAACTGGACCTTTAGGGAAAAGAGGCCACATTGGTGGAATGGGGTTGCCAGGGAAACAGGGTCACCAGGGGCCCAAAGGACAGCCTggtGACACAGGTGAATCAGGGTACCCAGGGGTTCTCGGAATGTTTGGACCAAAGGGACCTCCAGGAGATCTCGGCCCAGCCGGGATACAAGGACCAAAAGGGCCACATGGATTGATGggcaaTGTTGGTGCCATAGGCCCAGTTGGTATCATCGGACCCAGTGGTAGTCCAgGACCCCAAGGTGACAAAGGGAGTCGAGGGGAGACGGGGGTGCAAGGACCAAGGGGCCTTCCTGGTCCACGTGGACCACCCGGGTCCCCAGGTCTCCCTGGTTCTCTGACATTTAGAAAGGAGGCTATTGGAGCTGCTTTCCAAGTCATTATTGATTCCCATGCTGCACTGAGGTCAGAGAGTTACCATGTCATGGACCTGCCCATGTTGGACCACCAGGGTACAGAGATCTTCCAGACCCTCCACTACCTCAGCACACTGATCCAGAGCCTGAAGAACCCGCTAGGCACCCACGACAACCCAGCACGCATCTGCCGAGACCTCAAGGACTGTGAACAGAGGATGAACGATGGCACTTACTGGGTCGACCCAAACCTCGGCTGCTCGGCTGACACAATCGAAGTGACGTGTAACTTCAGCAGCGGCGGCCAGACCTGTCTGAAACCCATCACAGTATCCAAGCTGGAGATTGGTGTAGGTCGCATCCAAATTAACTTCCTCCACCTCCTGAGCTCCGAGGCAGTGCAACACGTCACCATCCACTGCCTGAACATCCCTGTGTGGGCCAACAGTTCCTCCCTGGAGCCCTCCCCCACCGCTGTGCGCTTCAAGGCCTGGAGTGGAGACATGATCCAGGCTGGAGGACTCTTAGAGCCCCACGTTGTGAGGGATGACTGCTGGATCAAAGATGGCCGCTGGCACCAGACCCATTTCATCTTCCAGACCCAGGACCCCAACTTACTCCCCATCCTGAACGTGTATAACCTACCAGCCACAGAGCCTGGCTCGCACTACCACCTAGAGGTTGGCCCTGTGTGCTTCCTATAGAGGCCTGTTGTTATAGAAGCTCAAAATACATTACATACACAGCCTCCTCATAGGAGTGACTTAAGGGGGATGGTGGAGGTTAGGAGGGGCTCCCTGTCCCCATATACTGGGGCCCATCAGGAGATGAAGGGCAGGTCAGGTCCCTTACCCTGCAGCATATGCTCGGACTGCAGAAACAGAAAGGGGGCGCCATTGAGGGACTGACCAGGAGAAACTGCAGAGATACAATGGGGCATCTCGCACTATAGTTTCTACTGCCTGCCTGAGGAGAAGATATTAAACTTTGGCTTCTTTCagggacttgttttactgttgcACAGTATGAGCCCTGAATGCCAGAGTGAGAGAAAATAATATGAAAATCTCTCTTCTGACATCACACTTGGACAACGTTTTTAAATTATTCCTTTTCATGGTCTGCACTCAACATGTAATGAAAGATGTATGAAGTAATAGGGAACGAGATTATACATATTATGCAGTACATCTTATCTTGTTAAATGTCACACATACACGTATTATTTATACATGTTACGTGTATATCTTAATATAAACGTGCAATAGACATCTCGTTCTGCAACTTTTCAAAGCAATTCAGGTTTACAGTGATCTCAAAACATTGGATATAATAGTAATCATAACATTCAGGTGTAGGAATAGTTCCTATCAGACATCCACAGGTGTATGCTTTCCAGCCATCTTCTCCTGCCTAGTCTGCAGATGAGGTATGAATCTACTTGTGACTTGGTGCAGAAGAAATGCCCACCAGGCTATGAAAAACGATtgcgttcacacacacaaacattttggATGTGCGTTTCCCTAGTCAAGTGAATTGAAGCTTGTAAGAGAGAGTGGATCCAGAAGAGTGTCAGTCTGTCTACCTCCCATCTCTCATCTAGCTATGGTGCTTTCAACTGAGATGACACCTGATACCTTGTGCTAAAATAATTAACCGACTCCCGTGGTGGGTCATGTTTAATCTTGACAGAATATATCTACATGCCTTTTATACTTcaaaagggatttttttttatacattacaAATGCAagtaattttaaaaaatcaaacTCACTTTTCAAGCTAACATAACAGCATTTTTCCCCTGCATCATCATTGTATCCCCTTTGTCCGAGTCTGAAGCTATTATTGAAGATTTAGGTCTTGTTTTTATTACTTGTTGAATGTATATAATTATGCAAAGCTTTTTGTTGTATACAGTGGATCCCAACATGCTAATTTATGTTATTTAATGTCCATGGGTTTTGCGACTTTGTCATCTATTACACTTCCCATCATcagagctttttttttttttgcatacatTTGGGGCTTCGTGGATTTCGTGatcttttttcttcttcaaaaCTGTACTGTATTTGGACCGTTTAATGCTTTGACACTTACTGTTTTACCTTATTGTTGATCATGTTTGTGATAATCTACAGACCAACCAACCATAAACTCAGAATACCTCTCATCACACAA
>TU578430
AACGTGCAATAGACATCTCGTTCTGCAACTTTTCAAAGCAATTCAGGTTTACAGTGATCTCAAAACATTGGATATAATAGTAATCATAACATTCAGGTGTAGGAATAGTTCCTATCAGACATCCACAGGTGTATGCTTTCCAGCCATCTTCTCCTGCCTAGTCTGCAGATGAGGTATGAATCTACTTGTGACTTGGTGCAGAAGAAATGCCCACCAGGCTATGAAAAACGATtgcgttcacacacacaaacattttggATGTGCGTTTCCCTAGTCAAGTGAATTGAAGCTTGTAAGAGAGAGTGGATCCAGAAGAGTGTCAGTCTGTCTACCTCCCATCTCTCATCTAGCTATGGTGCTTTCAACTGAGATGACACCTGATACCTTGTGCTAAAATAATTAACCGACTCCCGTGGTGGGTCATGTTTAATCTTGACAGAATATATCTACATGCCTTTTATACTTcaaaagggatttttttttatacattacaAATGCAagtaattttaaaaaatcaaacTCACTTTTCAAGCTAACATAACAGCATTTTTCCCCTGCATCATCATTGTATCCCCTTTGTCCGAGTCTGAAGCTATTATTGAAGATTTAGGTCTTGTTTTTATTACTTGTTGAATGTATATAATTATGCAAAGCTTTTTGTTGTATACAGTGGATCCCAACATGCTAATTTATGTTATTTAATGTCCATGGGTTTTGCGACTTTGTCATCTATTACACTTCCCATCATcagagctttttttttttttgcatacatTTGGGGCTTCGTGGATTTCGTGatcttttttcttcttcaaaaCTGTACTGTATTTGGACCGTTTAATGCTTTGACACTTACTGTTTTACCTTATTGTTGATCATGTTTGTGATAATCTACAGACCAACCAACCATAAACTCAGAATACCTCTCATCACACAACTCAGAGCCCTCCATTTGCATTtctt

Function

NR:

description
PREDICTED: collagen alpha-1(XXVII) chain B isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606572.2 False 7170 mRNA 0.53 60 42853787 42992231
TU578430 True 963 lncRNA 0.37 1 42991295 42992257

Neighbor

gene id symbol gene type direction distance location
LOC118965026 LOC106585222 coding upstream 17681 42829811 ~ 42836106 (+)
LOC110525999 LOC106585222 coding upstream 28629 42810314 ~ 42825158 (+)
LOC118964872 NA coding upstream 72996 42779261 ~ 42780791 (+)
LOC110525996 LOC106585219 coding upstream 202059 42646034 ~ 42655499 (+)
camsap1b LOC106585218 coding upstream 207883 42603308 ~ 42645904 (+)
LOC118965079 NA coding downstream 31632 43023780 ~ 43024698 (+)
LOC110526005 LOC106585229 coding downstream 963946 43937835 ~ 43981885 (+)
LOC118964874 NA coding downstream 1000602 43992833 ~ 43995155 (+)
LOC110526008 NA coding downstream 1266865 44259096 ~ 44260124 (+)
LOC110526009 LOC106585233 coding downstream 1292621 44284852 ~ 44295238 (+)
G509500 NA non-coding upstream 87439 42766120 ~ 42766348 (+)
G509272 NA non-coding upstream 96816 42756766 ~ 42756971 (+)
G509267 NA non-coding upstream 102173 42751408 ~ 42751614 (+)
G509266 NA non-coding upstream 103519 42750031 ~ 42750268 (+)
G509260 NA non-coding upstream 110574 42742014 ~ 42743213 (+)
G509719 NA non-coding downstream 9501 43001732 ~ 43002009 (+)
G509734 NA non-coding downstream 33936 43026167 ~ 43026443 (+)
G509736 NA non-coding downstream 36298 43028529 ~ 43028728 (+)
G509740 NA non-coding downstream 44806 43037037 ~ 43042996 (+)
G509160 NA other upstream 283618 42567105 ~ 42570169 (+)
G508559 dph7 other upstream 721847 42129225 ~ 42131940 (+)
G507768 LOC105030512 other upstream 1382379 41469551 ~ 41471408 (+)
fbxl17 fbxl17 other upstream 1994265 40568637 ~ 40886427 (+)
G506285 NA other upstream 2287358 40566067 ~ 40566429 (+)
G510416 NA other downstream 665237 43657468 ~ 43658493 (+)
G512192 LOC106584908 other downstream 2192208 45184439 ~ 45185869 (+)
LOC110526028 ccdc60 other downstream 2225496 45187119 ~ 45236944 (+)
G512912 NA other downstream 2643358 45635589 ~ 45636250 (+)
LOC110526042 LOC106584891 other downstream 3194769 46076084 ~ 46190292 (+)
G509700 NA non-coding upstream 17273 42973774 ~ 42974022 (+)
G509697 NA non-coding upstream 20378 42970556 ~ 42970917 (+)

Expression


Co-expression Network