LOC118965079


Basic Information

Item Value
gene id LOC118965079
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 43023780 ~ 43024698 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052415.1
TGAAGATCATGCACATAGAAGAGGGGACGGATAATGGGGCCAATCCTATGTTTCTTATGGAGTTGATGGAGATAACGAAGCTCTGGATGAGCCATAGCGCAAAGAAGAAACGGACAAGATAGGTGCCTCTATGAAAGAGAAATTGAAAGACTTGACTGAACAAATAGATCCATTGCTGCACAAAGGAGAGCTTCAAGCTGCCAAAGCACTTCTCGCCCAAATGAAATACTTTGCGAGCATTGAAGACAAGGTGAAGGAAAAACTTTTAGAGCTAATGTAAACTTTGTTGACTTTGTTTTGATACTTCTTGGGTCATTTTAAAGCTGTTTTGAAAGTCTTCAATAATTCTAATAATACaattagtatttatttatttattatgtgcAGTATTTGTTAAGGTTTCAGGTATACTAATAAATGTCAAATATTAATAGGTTACACATTGCCATAATG
>TU578535
CGTTGTCTTCCATTCCATGTCATAAAACGAAAAGGTTGAATCAGTCATTGTAAGTGACTTCCTGCTTCTATTTCAGCTGGAGCTGAAGATCATGCACATAGAAGAGGGGACGGATAATGGGGCCAATCCTATGTTTCTTATGGAGTTGATGGAGATAACGAAGCTCTGGATGAGCCATAGCGCAAAGAAGAAACGGACAAGATAG

Function

NR:

description
iron-sulfur cluster co-chaperone protein HscB, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052415.1 False 453 mRNA 0.36 3 43023863 43024698
TU578535 True 205 lncRNA 0.43 1 43023780 43023984

Neighbor

gene id symbol gene type direction distance location
col27a1b LOC106585224 coding upstream 31632 42853787 ~ 42992257 (+)
LOC118965026 LOC106585222 coding upstream 187757 42829811 ~ 42836106 (+)
LOC110525999 LOC106585222 coding upstream 198705 42810314 ~ 42825158 (+)
LOC118964872 NA coding upstream 243072 42779261 ~ 42780791 (+)
LOC110525996 LOC106585219 coding upstream 372135 42646034 ~ 42655499 (+)
LOC110526005 LOC106585229 coding downstream 931479 43937835 ~ 43981885 (+)
LOC118964874 NA coding downstream 968135 43992833 ~ 43995155 (+)
LOC110526008 NA coding downstream 1234398 44259096 ~ 44260124 (+)
LOC110526009 LOC106585233 coding downstream 1260154 44284852 ~ 44295238 (+)
LOC110526012 LOC106585234 coding downstream 1270916 44295614 ~ 44309360 (+)
G509719 NA non-coding upstream 21854 43001732 ~ 43002009 (+)
G509700 NA non-coding upstream 49841 42973774 ~ 42974022 (+)
G509697 NA non-coding upstream 52946 42970556 ~ 42970917 (+)
G509500 NA non-coding upstream 257515 42766120 ~ 42766348 (+)
G509734 NA non-coding downstream 1469 43026167 ~ 43026443 (+)
G509736 NA non-coding downstream 3831 43028529 ~ 43028728 (+)
G509740 NA non-coding downstream 12339 43037037 ~ 43042996 (+)
G509741 NA non-coding downstream 16210 43040908 ~ 43046262 (+)
G509763 NA non-coding downstream 49396 43074094 ~ 43074733 (+)
G509160 NA other upstream 453694 42567105 ~ 42570169 (+)
G508559 dph7 other upstream 891923 42129225 ~ 42131940 (+)
G507768 LOC105030512 other upstream 1552455 41469551 ~ 41471408 (+)
fbxl17 fbxl17 other upstream 2164341 40568637 ~ 40886427 (+)
G506285 NA other upstream 2457434 40566067 ~ 40566429 (+)
G510416 NA other downstream 632770 43657468 ~ 43658493 (+)
G512192 LOC106584908 other downstream 2159741 45184439 ~ 45185869 (+)
LOC110526028 ccdc60 other downstream 2193029 45187119 ~ 45236944 (+)
G512912 NA other downstream 2610891 45635589 ~ 45636250 (+)
LOC110526042 LOC106584891 other downstream 3162302 46076084 ~ 46190292 (+)

Expression


Co-expression Network