LOC110526003 (LOC106585228)


Basic Information

Item Value
gene id LOC110526003
gene name LOC106585228
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 43689304 ~ 43813410 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606577.2
TCTTGCATGGCAGCGCGGCCAATATACAACCATACACAGCGGTTTCTTCTCATTTCGGCCTACCTCGTTCGGATTACAGCCTGGTAGAATTGAGACAGGATATGTACCACAGTATCCATGGATTATTatttttgatttttatttttgattttgattttccAAATTCTGGAACTTTGAgctatttgtgtgtttttttgtttcttGTTTGTGCGTCCTTTTGGAAGGGTGCTCTGCGCTCCCGTGCGTTGTGTGTTGGTTGAAAGGTCCCAGTTTGGATATTACACTCTAGTTTTTGTCTTCGCTCTCACTGGCCCAAATGACTGAGCGCTGATCCAGCCTTCTATCGGCTTTAGCAGGAAAACCTCCGTCTAAAGTTAGAATATAACCGTGGCTTAGGGGGTCCGTGACTACACAGTGAACTGGATTTGCAATTATCTATCGATTGCAACCGAGAGCGGATACACAGTCTCTGGAaacagagttccctctgctggaTTTATTCAACTACTGGATTTATTCATAAATCATGAAGACCAGTCTTGTTGAGGgGGGCCGACTCCTGTTCCTTGTGTTGTGGTTAAACCTGGTGCCTCGAGGAGCAGAGGGCTGCCCGGTCaaatgtgtgtgttacagtgagcCACGGCCCACCATGGCATGCCAGCAACAAGGACTGTTCTCCATCCCCAACGAGATCCCTGTGCAGAGCCAGCGGATATTCCTCCAGAGCAACAAGCTGACCGTGGTCCGCTCCACCAGCTTCAGCTCTGTGCACAACCTCACCGTCCTCTGGATGTACTCCAACAACATCAGCCACATCGAAGCTGGGGCCTTCTATGGTCTGGAGCGGCTGGAGGAGCTGGACATTGGGGACAACAGTAACCTGAGAATCATCAGCCCCACGGCCTTCAGGGGCCTGTCCAAGCTCCACACCCTCCACCTGCACAGGTGCGGCCTGTTGGAGTTACCTGTTGGAGCGTTCCAGGGACTGTTCTCCCTGCAGTACCTTTAcctgcaggacaataacctactgGCCCTGCACGATGACACTTTCCTGGACCTGGCCAACCTCACCTATCTCTTCCTGCACAACAACAAGATCAAGACCGTATCGGACCACATGCTGCGTGGCCTCATTAACCTCGACCGCCTGTTGCTGCACCAGAACCGGGTGATCTATGTCCAACCAAGAGCATTCAGTGACCTGAGAAAACTGACCACACTGTTCCTGTTCTACAACAACCTGACCGTGCTGACTGGGGAGACCATGGACCCGCTGGGGTCCCTCCAGTACCTGCGTCTCAAcgggaaccagtgggtctgtgaCTGTCGGGCCAGGACCCTGTGGGACTGGTTCAAACGCTTCAAGGGCTCCAGCTCAGAGCTTGAGTGTAACGTCCCATTGGAGTTGTTTGGGAAGGACCTGAAACGGCTGAAGAGTGATGATCTGGAAGGGTGTGTGGAAACTCCTCAGATCCAAACCCAGCTCTTCAGCTCCAACCTGTGGTCTGGAAAATTTGCCTCCACGGAATATCCTCTGGGAAATGGAATTCCCAGGTGTTGTCTTCCAGATAATGATAAGTCCTCTATCATCTCCGAGAAAACCATCCCTGACCCCTCATCCTACAACAGCCGCCAGATCACCAACAACCCCCTCAAGGAGAAGGAGAACATATCCAAGACCAAATTCAGAGAGCAGGAGCGAACAAAAAATGAGACCACCCGGAATAAGCAGAGTCTCAACGACGGGCCTCTGGGGACTCTGTCCAACAACCTTGACCAGTCCTTAGTCCAACTGCAAGATCTGGAACCTTCTACAGCCCCAACCAGGAAGAAAAAGAAGTGCACTAAAAAACCCAAATCCGATGCACAATGTCTCAAAGGCCATGGATCTACAATGCAGGTGGAGCTAAGTTTTCTCTTCATGTCCATAATCTGGTTCTGGTTCTCTATGGTCATGTCTTAGGACATTAGGGCCTGGGATGGGATTCATGCTAAATAAACATTGTTGGGACTCACAGATTGTTATTAATGCTCATGACAATGATACAGAATCTATCTGCAGTGAtctctgacctccactaacagCCCAGAGACTGATAACACAGGAAGTCAGGTTTGGACCCATTGCCAGGGTAACAAGGACTTACGATAATAAAGAAGTTAAACAAAAAAGGATGCCTTTACAGAACATGTCTCATCTAATGTATATAACAAATCAGTGCCCAAaattgtttgttctgtatgtactgtacctTGTCTAAGCTACACCACTTTGGAGACTCTCCTTATTCCTTTTTCTGTCTCAAAAGCTTTTACTGCTGAGACAGTGACTGCTTAGACAGACcacaaaaaatgaataaaaaataacatGAATTCAGAGGGTCTGAACGAACACAAAGAACGTTTAGGGTCTGTTTgttgaaaaatagattttcacTCCCCCATTATTTATTCAAAAAGTGTTGCATTTGTCGGGTACTGTTATGTTTTTTATGTTTATAAGTAAAGACAAATGTTTATTCTCTCCCCAGTTTGAGTTATGTTTTCATCACAGTATGGGTACGGGTAGCATTGGCTAAAATAATGCTGTCTAAATGTTTCACAGAGATTGCAATGGAATCATAGATATGCATTTTATTTTACTTGTGTACAAGTATGAATATATTATGAATAAAAGTTATCCTTTCCTATA

Function

NR:

description
reticulon-4 receptor-like

GO:

id name namespace
GO:0048936 peripheral nervous system neuron axonogenesis biological_process
GO:0007411 axon guidance biological_process

KEGG:

id description
K16659 RTN4R, NGR; reticulon-4 receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606577.2 True 2692 mRNA 0.47 2 43689304 43813410

Neighbor

gene id symbol gene type direction distance location
LOC110526002 LOC106585226 coding downstream 670785 43005570 ~ 43018519 (-)
zgc:101858 LOC106585225 coding downstream 691446 42992049 ~ 42997858 (-)
LOC110525998 LOC106585223 coding downstream 900816 42766320 ~ 42788488 (-)
LOC110525997 LOC106585221 coding downstream 959710 42654984 ~ 42729594 (-)
LOC110525994 LOC106585220 coding downstream 1102018 42576529 ~ 42587286 (-)
prodhb LOC100194675 coding upstream 127380 43940790 ~ 43955257 (-)
LOC110526006 LOC106584969 coding upstream 231636 44045046 ~ 44099131 (-)
nf2a nf2 coding upstream 397440 44209338 ~ 44272386 (-)
fbxw8 fbxw8 coding upstream 496484 44309894 ~ 44345449 (-)
LOC110526015 gatsl3 coding upstream 552446 44365856 ~ 44394019 (-)
G510322 NA non-coding downstream 155115 43533913 ~ 43534189 (-)
G510304 NA non-coding downstream 169841 43519206 ~ 43519463 (-)
G510221 NA non-coding downstream 228381 43460694 ~ 43460923 (-)
G510214 NA non-coding downstream 231820 43457032 ~ 43457484 (-)
G510162 NA non-coding downstream 276331 43412758 ~ 43412973 (-)
G510947 NA non-coding upstream 185358 43998768 ~ 43999038 (-)
G510951 NA non-coding upstream 188483 44001893 ~ 44002194 (-)
G511181 NA non-coding upstream 367848 44181258 ~ 44181689 (-)
G511189 NA non-coding upstream 389726 44203136 ~ 44203395 (-)
G511342 NA non-coding upstream 468565 44281975 ~ 44282194 (-)
G510310 NA other downstream 165196 43523714 ~ 43524108 (-)
G509952 NA other downstream 563917 43124581 ~ 43125387 (-)
G509949 LOC106578716 other downstream 566212 43122546 ~ 43123092 (-)
G509902 NA other downstream 612147 43076692 ~ 43077157 (-)
G509432 NA other downstream 1043435 42643519 ~ 42645869 (-)
znrf3 LOC106584905 other upstream 1461228 45270568 ~ 45384850 (-)
apba1a apba1 other upstream 2546478 46263121 ~ 46360886 (-)
LOC110526044 LOC107699739 other upstream 2557280 46367701 ~ 46430607 (-)

Expression


Co-expression Network