LOC110526014


Basic Information

Item Value
gene id LOC110526014
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 44337537 ~ 44339789 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002473857.2
GCCTCTCGCCTCAGGTGGATCGGGGATGAGATGGATAAAAACTGGACGGTTGGATCTCGAGATAACAGATATAATGAGAAACTTGGGTTAAATAGAGAAGCCCGCTTTAGAGGCTTTGTATGCACAGCAATACAAATCACCGTCCTCATAATCTTTCTTAGAAAGCGACACCTGTAGATGTAAGTCACTGCAACGGCAAAACCAGCAACAGATGGTGCCTTCAGGATCCTGAGGAGAGAGAGCTGTCAGAATATTTGCACTGAGAAAAAGGATGacagccagccacagccagccGAGGTTCAGTGTGCACCGAGGTCATAATAACCATACCCCACAATCGGCAAGACAGTTAGGAACAGGGTACATTTTTTGTACTTTGTTGGCTAAGGAAAATGTTGTGCTTCGGAATTCATGTGACATAACATTATGTCACAGAGATTAAGTAACATTTTCAGTTCTTGTTTTATGGGTATAAGATAGTAGTACTGtgtgaatacatttttaattgCGTTATTTCCCAGGTTATTTTATTGTTTGACTCACTGCTTGGAATTCAGTAGGATTTAACAGACATAAATTGTGTTAGTATAATCACTCTCTGGCGGTTTTTCCCAGAATAAAACGGTGACGTCATCCTCCCTTGACCGTTACCAAAGGAAAAACGTACTAGAATTGCCCACGCGACTGTCATTACGTGGACGACCTTACACTTGAATGATCGATGCACTAATACACGATGTCAATTACCTAACTGAAAAAGCTTACTtgtattaaaaaaatacatgtttctaCTTTTTAGACGCCCAAAGGAGACATTTGAGCAATCTGGAAATGGTGCTCTGTGGAGAAATAGCACTACTTTTTACATAAGGTTCTGTAATAATTAGAGACCATGCAAAGTCTGGATTCTATCCTTACTAAATATGAAAGTCAATTTGTAAAGGTTTTTTTCTGCAGTAATTTTTATTAGGTGAATAATGATGTTAGTTGTATCAAATATTGATAAGGAAAAAAATAAGTCAAATCAACTGTTCTATTTTTTGAACTTTTGAAATTGGCTGGAGGCTCAGCATTGTTAAGGCAGATAATGTTTATGAAACCATGCAAGAAATCTTGTGTGCAAAAATAAGGGCATGCTATTCATGTTTACAGTACATAAGCTGTTTTTATATATCGCAAAAAACTGTAGTTTTCAATTGCAGTGCTGAATCTGTGTCTTTTATAAAGAATGTGTTCTTTACATGCTATTTACATTTGTATTACATTGTGAATTCTGTGCTCACTCTGGATAATAAAAGTTTCAAAGTAAAAATGCTTTCATGCTATCATTGTTATGCAAAAAGTAATGACAACATAAAACATTCAACAAATGCTGAACAATACTGCTTCAACCATGGTTTCATTGAAAAATCTGATACATACTGAAAACACACAACTTGTTTTCGAGTTTCTCAAATGTTTTGGTAGGTCTGATGTCATCAAACATAAGCTGTATCTTTACTAGAAATCAGGTGAAATGTATAACACGTAAATTGTTGCAAGAATGGTCACATTAGTGAAAGATCTACAAAATACATCAGCAAATTAGCAATTCATGTGCTGACATAAGCTACCCTGTACAATAATACTGACCAATAGCACACTGCTGTGCTGCACGGAGATAAGTTCACATTCTATTTCTTTGCAAGGATGGATGAGACAACTGTATAG
>TU580150
CTGATCAGATCCGGACAGTAAGGAGGATAATTTTATATAAGAGCGGATCAGAGGAGGGGACATATAAAGAAGATAGAGCGATTTGTAGAGAAGATGTGCTGGCTCCCGATAGACGAGCCTCTGCCTCTACCCGGCGACGTGATGGTCTGTGCCCAAGGAACCTCACCATGCTCCGGGACCCAGTCACTCGCCTCTCGCCTCAGGTGGATCGGGGATGAGATGGATAAAAACTGGACGGTTGGATCTCGAGATAACAGATATAATGAGAAACTTGGGTTAAATAGAGAAGCCCGCTTTAGAGGCTTTGTATGCACAGCAATACAAATCACCGTCCTCATAATCTTTCTTAGAAAGCGACACCTGTAGATGTAAGTCACTGCAACGGCAAAACCAGCAACAGATGGTGCCTTCAGGATCCTGAGGAGAGAGAGCTGTCAGAATATTTGCACTGAGAAAAAGGATGacagccagccacagccagccGAGGTTCAGTGTGCACCGAGGTCATAATAACCATACCCCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002473857.2 False 1710 mRNA 0.36 2 44337726 44339789
TU580150 True 524 lncRNA 0.49 2 44337537 44338414

Neighbor

gene id symbol gene type direction distance location
LOC110526012 LOC106585234 coding upstream 28366 44295614 ~ 44309360 (+)
LOC110526009 LOC106585233 coding upstream 42488 44284852 ~ 44295238 (+)
LOC110526008 NA coding upstream 77602 44259096 ~ 44260124 (+)
LOC118964874 NA coding upstream 342571 43992833 ~ 43995155 (+)
LOC110526005 LOC106585229 coding upstream 355841 43937835 ~ 43981885 (+)
LOC110526013 LOC106585235 coding downstream 5693 44345482 ~ 44348787 (+)
LOC110526020 NA coding downstream 390278 44730067 ~ 44740687 (+)
LOC110526024 suds3 coding downstream 533596 44873385 ~ 44895982 (+)
LOC110526025 srrm4 coding downstream 721869 45061658 ~ 45152985 (+)
LOC110526027 hspb8 coding downstream 816192 45155981 ~ 45178825 (+)
G511256 NA non-coding upstream 53131 44284251 ~ 44284595 (+)
G511249 NA non-coding upstream 59419 44277848 ~ 44278307 (+)
G511247 NA non-coding upstream 62910 44274417 ~ 44274816 (+)
G511197 NA non-coding upstream 125808 44209773 ~ 44211918 (+)
G511194 NA non-coding upstream 132138 44205360 ~ 44205588 (+)
G511281 NA non-coding downstream 131 44339920 ~ 44342925 (+)
G511284 NA non-coding downstream 9336 44349125 ~ 44350035 (+)
G511283 NA non-coding downstream 10459 44350248 ~ 44351084 (+)
G511285 NA non-coding downstream 12761 44352550 ~ 44352753 (+)
G511389 NA non-coding downstream 26186 44365975 ~ 44367235 (+)
G510416 NA other upstream 679233 43657468 ~ 43658493 (+)
G509160 NA other upstream 1767557 42567105 ~ 42570169 (+)
G508559 dph7 other upstream 2205786 42129225 ~ 42131940 (+)
G507768 LOC105030512 other upstream 2866318 41469551 ~ 41471408 (+)
fbxl17 fbxl17 other upstream 3478204 40568637 ~ 40886427 (+)
G512192 LOC106584908 other downstream 844650 45184439 ~ 45185869 (+)
LOC110526028 ccdc60 other downstream 877938 45187119 ~ 45236944 (+)
G512912 NA other downstream 1295800 45635589 ~ 45636250 (+)
LOC110526042 LOC106584891 other downstream 1847211 46076084 ~ 46190292 (+)
G513501 NA other downstream 2020167 46359956 ~ 46360585 (+)

Expression


Co-expression Network