LOC110526013 (LOC106585235)


Basic Information

Item Value
gene id LOC110526013
gene name LOC106585235
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 44345482 ~ 44348787 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606591.2
CCACATCCgagtttggaaaatgttttgatGGTGGacgtcagattttaaaaatgttcGTTTATTTCCGAGGCTTTCTCTGAAGTGAATGTCGGCAACAGGTGTCTCTTGTAGAGTTATAGCCAGTTAGCGATGAATCTTACAGCAGGCTACTAATGAGTGGATGAGTACAGTAGCTAGCCCAGTGTCGTTAGCGTGCCCACAGGCTAACAAAGCAGTCTTTATCCAAAACGGCTTGCTAATATTTACttttttagctagctacctagcacTACGGAAATCTTTTTTTTTACAGCTCATGTATTCACAGCTACCACGTTTTCAAGCCTagtattgctagctagctagctagcaaaatgGGTTAGTTTGCGGTTATGGTGTTGACCAAACAGTTACTCTGTCATAGCCAGACACCCCAGTTGAACTGCAAGTCTCTACTGAACAGTTTATCCAGCTTGCTTGTTATTGGAGCATTCCTGCAATTAAATTCCTCTGGCTGGACTGGGTGGTCGCGGGGATCTCCTAAGGTCATGCCATGGTGCTACGAAGATTACTGAGAAAACGTTGGGTGCTAGGTGTGGTGTTTGGACTTTCTTTGATCTACTTCTTAACCAACACCCTGAAACAGGAGGAGAGAACCATAAGGGATCGCACTCTGTTGGAGGCCAGGGACCCGGACCACCGGATCCCATGGAAGGTCAGGTTTAACCTGGGCAACAGTAGCAGACCAATCACTCAGTGCCGGAACTCCATTCAGGGCAAGTCACTGCTCACAGATGAACTGGGTTATGTGTGTGAGAGGAAGGATCTGCTGGTGAACGGTTGCTGTAATGTCAACGCTCTGAGCTCCAGACAGTACATCTGTAAAAGTTGTCTGGCCAATGGCTGCTGTAACATCTACGAGTACTGTGTGTCCTGCTGCCTCCAGCCTGATAAGcaaCTTCTACTAGAGCATTTCCTGAACAGAGCTGCAGACGGCTTTCAGAACCTCTTCACCGCCGTGGAGGACCACTTTGAGCTGTGTTTAGCTAAGTGTCGAACTTCATCGCAGAGTGTCCAACATGAAAATACCTACAGAAATTCACAAGCAAAATACTGTTATGGAGAAAGTCCACCTGAACTCCTGCCTATATGATTGCTTGATCCTCTGGGACCTACGAGACTGAAAATAAACTAATAATAGTCCAACTAAGAGCCAAGGGACACACCTTGATGCTACTTGAGAAGACGTGCTTCATCTTGTGTCCCATACTGGCCTTGAACAGTCTGATACCATACAGTGCCATCAAGAACACCAGATCCATTTACTGTATAGAGGGAGTTTGGCAAACTTTGACTGACAATAACGGACACCATGTTGAACCTTTAGATATAATAATGTGAGTAATCGTCTCTACATATGGCTCTGAAGAACACTATCGTAACCTCACAACTATGGACAAATACTTTATGATTTTTCTATATTATTTACACTTCATAAGTGCATAGCTTCATAACTTCATCAGTGATGATCATCAGGTCTCATTCGCTCAACAGTTGGGATTCGCCTCATGCTGCCCATTGTTTCACATCATGGGCATGCAACTGaaagtgttttaaaatgtttcGCAACAGAACTAAAATGTGGGTTTCTTATTGGTTAAGTCCCTCCCTGTTTAAGTTGTTTACTTCCAAATGAACATGGCCCATGTTATAAAGGTTTTTATTTCAAGCCTGATCAATGTACTGAAGGAATGGTATTAGTTAAGTCTTCATTGTTGAGAAACAAACTACTAAGAATGTGTCATCACTTGTGTGTAGTTGTGCATGCATATTGACTGACGGCTATTTAATAACGTGACTGAAAGTAATCGGCTCACGGTTTACGTTGCAATGTCTATTTTTCAGAATAATTATCAGTATTGCATTTTGTATAGAAATTGTATCTATTTTACACTATGAAATAATTCTATATTATGATGACTAAAGACCCTATAGTTTATCTGGGGTCAGAGAGCTGTATCAACATGTAGAATTGGCATATTTTGATTGAATATATGACAAAATAACTTTTTCAACATTGTTTTTTTCATTGTCAATATACATACATTTTCTTTC

Function

NR:

description
UPF0454 protein C12orf49 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606591.2 True 2094 mRNA 0.41 5 44345482 44348787

Neighbor

gene id symbol gene type direction distance location
LOC110526014 NA coding upstream 5693 44337537 ~ 44339789 (+)
LOC110526012 LOC106585234 coding upstream 36122 44295614 ~ 44309360 (+)
LOC110526009 LOC106585233 coding upstream 50244 44284852 ~ 44295238 (+)
LOC110526008 NA coding upstream 85358 44259096 ~ 44260124 (+)
LOC118964874 NA coding upstream 350327 43992833 ~ 43995155 (+)
LOC110526020 NA coding downstream 381280 44730067 ~ 44740687 (+)
LOC110526024 suds3 coding downstream 524598 44873385 ~ 44895982 (+)
LOC110526025 srrm4 coding downstream 712871 45061658 ~ 45152985 (+)
LOC110526027 hspb8 coding downstream 807194 45155981 ~ 45178825 (+)
LOC110526028 ccdc60 coding downstream 838332 45187119 ~ 45236944 (+)
G511281 NA non-coding upstream 2557 44339920 ~ 44342925 (+)
G511256 NA non-coding upstream 60887 44284251 ~ 44284595 (+)
G511249 NA non-coding upstream 67175 44277848 ~ 44278307 (+)
G511247 NA non-coding upstream 70666 44274417 ~ 44274816 (+)
G511284 NA non-coding downstream 338 44349125 ~ 44350035 (+)
G511283 NA non-coding downstream 1461 44350248 ~ 44351084 (+)
G511285 NA non-coding downstream 3763 44352550 ~ 44352753 (+)
G511389 NA non-coding downstream 17188 44365975 ~ 44367235 (+)
G511417 NA non-coding downstream 63045 44411832 ~ 44432361 (+)
G510416 NA other upstream 686989 43657468 ~ 43658493 (+)
G509160 NA other upstream 1775313 42567105 ~ 42570169 (+)
G508559 dph7 other upstream 2213542 42129225 ~ 42131940 (+)
G507768 LOC105030512 other upstream 2874074 41469551 ~ 41471408 (+)
fbxl17 fbxl17 other upstream 3485960 40568637 ~ 40886427 (+)
G512192 LOC106584908 other downstream 835652 45184439 ~ 45185869 (+)
G512912 NA other downstream 1286802 45635589 ~ 45636250 (+)
LOC110526042 LOC106584891 other downstream 1838213 46076084 ~ 46190292 (+)
G513501 NA other downstream 2011169 46359956 ~ 46360585 (+)

Expression


Co-expression Network