LOC110526019 (cirbp)


Basic Information

Item Value
gene id LOC110526019
gene name cirbp
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 44717516 ~ 44718429 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606597.2
CGCGGCAAGCATCCATTTCTTTTCCGACGACGTACCTCTCCAAGCAGCAGCTTTTCTCGTTCTGTTCGTAAAAGACAAAGAAACATGTCCGACGAAGGAAAACTTTTCGTCGGTGGCCTGAGCTTCGACACCACAGAGCAATCTCTTGCGGAAGCTTTCTCCAAGTACGGAAACATCGCAaaatgtgatgtcatcatggacaGAGAAACAGGAAGGCCTCGTGGATTCGGCTTTGTGAAGTACGACAATGCCGAGGATGCTAAGGACGCAATGGAGGGAATGAACGGTCAGTCTCTTGACGGCAGAACCATCCGTGTGAATGAGGCAGGCCAGGGTGGCGGTCGTGGCGGCGGTGGAGGAGGCGGTGGATTCAGAGGTTCCCGAGGCGGTGGTGGATATGGTGGTGGTGGCGGCGGTGGATATGGTGGCGGCGGTGGCCGTAGCTATGGTGGCGAAGACCGGGGTTACGGAGGTGGTGGCGGATACAGGAGCGGCGGTGGTGGTGGAGGCCGAGGCGGTGGATACTCCTCCGGCGGTGGCTACAGGGACAATAATTAGGGCCTAGGGAGGCTACGGGTACCTCTTGAGGCTCCTACAGGGACAGTTACGAGAGCTAGCTATGCTGTAAACGAGTAACACTCCGATTCAAGATCATTTGGCTGACTCTTCAAGAAATGTCCGTGTTGACCGAAAGACTTTTGTTGTAATCTTAGTCCTATTCTGTGTTTAAGTATCTAGCTCGAGCATCTTTACATTTAGCCACGTGTGTCGGCCATTGATTTACAAACCATGTTCATGGTCTTGCCCAATAACATTCCACCTGGGGGCGATTTTGTATTTCTGGTCTGTGTATCATCAACATTTAAGATTATTTGTCTTCATTGCGCCTATTAAAACGATTTGTTGAAACAATA

Function

symbol description
cirbp Enables mRNA 3'-UTR binding activity and small ribosomal subunit rRNA binding activity. Involved in mRNA stabilization; positive regulation of translation; and response to UV. Located in cytoplasm and nucleoplasm.

NR:

description
glycine-rich RNA-binding protein 1-like

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606597.2 True 914 mRNA 0.51 1 44717516 44718429

Neighbor

gene id symbol gene type direction distance location
LOC118965027 LOC106585243 coding downstream 427 44643847 ~ 44717089 (-)
LOC110526017 LOC106585243 coding downstream 124898 44536009 ~ 44592618 (-)
nos1 LOC106585241 coding downstream 216337 44436292 ~ 44501179 (-)
lrrc74b lrrc74b coding downstream 281742 44411696 ~ 44435774 (-)
LOC110526901 NA coding downstream 307569 44402811 ~ 44409947 (-)
wsb2 wsb2 coding upstream 22510 44740939 ~ 44748610 (-)
LOC110526021 vsig10 coding upstream 31172 44749601 ~ 44756143 (-)
taok3a taok3 coding upstream 44462 44762891 ~ 44855594 (-)
LOC110526026 LOC106584908 coding upstream 460811 45179240 ~ 45185652 (-)
trnaw-cca NA coding upstream 509978 45228407 ~ 45228478 (-)
G511967 NA non-coding downstream 58029 44658893 ~ 44659487 (-)
G511958 NA non-coding downstream 73982 44643285 ~ 44643534 (-)
G511957 NA non-coding downstream 74917 44642399 ~ 44642599 (-)
G511885 NA non-coding downstream 167239 44523903 ~ 44550277 (-)
G512008 NA non-coding upstream 9393 44727822 ~ 44728825 (-)
G512009 NA non-coding upstream 10464 44728893 ~ 44729483 (-)
G512084 NA non-coding upstream 158196 44876625 ~ 44878344 (-)
G512599 NA non-coding upstream 432855 45151284 ~ 45152892 (-)
G512650 NA non-coding upstream 498811 45217240 ~ 45217441 (-)
nf2a nf2 other downstream 505693 44209338 ~ 44272386 (-)
prodhb LOC100194675 other downstream 769127 43940790 ~ 43955257 (-)
G510310 NA other downstream 1193408 43523714 ~ 43524108 (-)
G509952 NA other downstream 1592129 43124581 ~ 43125387 (-)
G509949 LOC106578716 other downstream 1594424 43122546 ~ 43123092 (-)
znrf3 LOC106584905 other upstream 556209 45270568 ~ 45384850 (-)
apba1a apba1 other upstream 1641459 46263121 ~ 46360886 (-)
LOC110526044 LOC107699739 other upstream 1652261 46367701 ~ 46430607 (-)
G514434 NA other upstream 2192229 46910658 ~ 46910950 (-)
G514777 NA other upstream 2297733 47016162 ~ 47016496 (-)

Expression


Co-expression Network