LOC110526021 (vsig10)


Basic Information

Item Value
gene id LOC110526021
gene name vsig10
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 44749601 ~ 44756143 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606599.2
TTTGTCTCCATACTCGACTCAGCTACGCGACATGCGTCATCCATTTGGGCACTAGGCGTGTCCATAATGCCTCTCCCGGAGTAAACAGCCAGGTAGTCAAATAGGTTAAAATGTGTAGCATGTGGCGGTTCCATGGAAAAGAGACATGTTAAATGATGGCCTATGTATCTATTATTTACTCTAAGCAGTCTCATGTAAACTACGTGTCGAGTTGTCTTGTGTCATAGCACGTACAACAGGTAGTCAGGTAAACTGCTGACATTGGCAACCAAGCTTTTGTTTAACATGAAATCGGGCTATACAGCAGGAATAATCATGAAGGCATTCTCAGTTGCAATTTTTCTTCTTCTGTTCATGGATCAGACAGCAAATGGACGCTCAGATAAAACTACTGTAATTAAAACTCTGGGGGCGAATATTCTACTTCCGTGTTGGAACACTGCTATGAACGTGACTCCCTCCTTCACGCGATGGATGCAGAATGGACAGGTTATCATTGGCCGAAATCATTCCATAATTCTAACTCCTTCAAGTGAAGGGCACCTGACGATAATGTACAATCAAAGCTTGTACATCAATGGACTAGCTTTATCAGATGAGGGGATATATCTTTGTGATTCCTTACCCCATGACAACAACACTCAAACTAGTCTGACATTGCAAATAGTCTATGGTCCTGGCAATGGCATCACAGACATCCACCCAGCCACAACCCTTTCCAATGGAACCCTCATCGTCCACAGGGGTTCCACGGTGTTGTTCAACTGCTCCAGCTGGTCCTATCCCTCCCAGCGTCTGTCCTGGGGGTTTCAGGGTGTGGTGTCCAGAAACGACTCCCTGACAGCGGGCAGTGGGTCCTGGCTGAACTTCAGGATAGAGGACATCCAACCCACAGCTCAGGGGAACTACATATGTAGAGCCCAGAACTCAGTTTCCCAGAAGGAAGTTGGCTGGAGCAAAGAGCTGCTTGTATACTATTCCCCAGAGAAGCACCCGGAGTGTCAGTGGAAGATTGGGAAGGACCCGTCCCATGTCCAGTTTAACTGCAGCTGGTTTGGAGGCTACCCCTCTCCCACATTACTCTGGGGGGAGAAACATCAAGTGCCATCGAGCcagGTGGCTGGACAGCTGATGGAGTCGGAGGTGACAGACCGTCTAGTGGTAAATCTGAACAGGTCGTTGTTGTTCGAGGGGCAGACGCTGAAGTGTGATGGGCATCATCCTATGATTAGTACAGAAGACGAGAAGTTCTGCTCCTTCACGCTCAAGTCTCCTTATCCTGAAGGGGAACCACTGGTCACAGCTCTCGAAGGCACCAACATCACATTAACCTGTAAAGAGTCCAGCTCCCTGCCTCCAGCCCTCACCACCTGGCAGAGGACAGCACAGCAGGAGGACGTGGTACCCAGCCCCAAGTATGTCCTGTCACGACAGGGCCCCACCTTCACCCTCACCATAGTCAACATCACCAAGCAGGACGAGGGCTTCTACTTCTGCAGGAGCGAGAACCCACTGATGGTCCGCGAGCTGGAGATCTATTTAACAGTTAAAACCTCATCTCAATACACTGGAGCAATCATTGGGATATTCCTAGCCATTTTGATCGTAGGATCTGGGATTGTTATCGCTAAAACAGTATATTCCAGCCGTGACCGAATTTGCCTGGGTAATGGATTTGAGCGAATGGAGGAGGACAGGGAAGATGTGTTGAGCCTGGTAGAGTCCGATGAAGAGGTGTTTCCTGAAGCAGTACCCAGACTGCCACCTCTATCTCTGACTAACGGACACAACACTACTACACTTGTACAAATACATCAAATCTCATCCAATGACCATGAAGATGAAGAAATTGTTGAACATCCATTACAGCTAGAACATACAGATATGGAAGAACTTGTCACATTTTAGGTGTTGGAAGATTGATATTCTTTAAAACATTACATAAAAACAAAGAGAACATTTTACTACCTATGAAACTGTGAAAAAATGTGTAATTATTGGTGGTTGGCTTTCACAGTAGCCGATGTATGGGTCAGCTTTTTATCATCCATTTCACTTTTTTGGCTGATGAATTAATAATTAACAGGGTTATTTAAATGAATTGTTGCCATTCGTCTCAAATGACATTTTTCACAATAATGTAACATTTCATAACATTTTGTATCACTCAAACACAAAATAAACCTGAATAAAATAAAGCATAGGCAGGGTGAGTTGCACCCCTATTTGCCCTCA

Function

symbol description
vsig10 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Is expressed in EVL; ectoderm; otic vesicle; peripheral olfactory organ; and pharynx. Orthologous to human VSIG10 (V-set and immunoglobulin domain containing 10).

NR:

description
V-set and immunoglobulin domain-containing protein 10-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606599.2 True 2235 mRNA 0.46 9 44749601 44756143

Neighbor

gene id symbol gene type direction distance location
wsb2 wsb2 coding downstream 991 44740939 ~ 44748610 (-)
LOC110526019 cirbp coding downstream 31172 44717516 ~ 44718429 (-)
LOC118965027 LOC106585243 coding downstream 32512 44643847 ~ 44717089 (-)
LOC110526017 LOC106585243 coding downstream 156983 44536009 ~ 44592618 (-)
nos1 LOC106585241 coding downstream 248422 44436292 ~ 44501179 (-)
taok3a taok3 coding upstream 6748 44762891 ~ 44855594 (-)
LOC110526026 LOC106584908 coding upstream 423097 45179240 ~ 45185652 (-)
trnaw-cca NA coding upstream 472264 45228407 ~ 45228478 (-)
xbp1 xbp1 coding upstream 495743 45251886 ~ 45254834 (-)
znrf3 LOC106584905 coding upstream 514425 45270568 ~ 45384850 (-)
G512009 NA non-coding downstream 20118 44728893 ~ 44729483 (-)
G512008 NA non-coding downstream 20776 44727822 ~ 44728825 (-)
G511967 NA non-coding downstream 90114 44658893 ~ 44659487 (-)
G511958 NA non-coding downstream 106067 44643285 ~ 44643534 (-)
G511957 NA non-coding downstream 107002 44642399 ~ 44642599 (-)
G512084 NA non-coding upstream 120482 44876625 ~ 44878344 (-)
G512599 NA non-coding upstream 395141 45151284 ~ 45152892 (-)
G512650 NA non-coding upstream 461097 45217240 ~ 45217441 (-)
G512655 NA non-coding upstream 466734 45222877 ~ 45223103 (-)
G512657 NA non-coding upstream 469411 45225554 ~ 45226243 (-)
nf2a nf2 other downstream 537778 44209338 ~ 44272386 (-)
prodhb LOC100194675 other downstream 801212 43940790 ~ 43955257 (-)
G510310 NA other downstream 1225493 43523714 ~ 43524108 (-)
G509952 NA other downstream 1624214 43124581 ~ 43125387 (-)
G509949 LOC106578716 other downstream 1626509 43122546 ~ 43123092 (-)
apba1a apba1 other upstream 1603745 46263121 ~ 46360886 (-)
LOC110526044 LOC107699739 other upstream 1614547 46367701 ~ 46430607 (-)
G514434 NA other upstream 2154515 46910658 ~ 46910950 (-)
G514777 NA other upstream 2260019 47016162 ~ 47016496 (-)

Expression


Co-expression Network