LOC110526025 (srrm4)


Basic Information

Item Value
gene id LOC110526025
gene name srrm4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 45061658 ~ 45152985 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606606.2
taCACAAGGTGTCCTACTCTCCTTGACCTATCCCAGCCTCCCAACACAACGTCACAGTCTGAGAGAGACAAAACAAGCAGCCGTCAGCTAGGCTCCTCAGTCGCTTTGAACACACACCGCTCGTACAgaacacacgcatacatacacactcacactcactcatgACCCTGCGCGCCCACAAACTCAAACATACACAGTCAGCGAAACACTCGCCTCAGCTCTCAGAACTCATCCACGTGCTGGTGTGTTGAGAAACACTCTGTCACACATTTCGTCCGTCACTGGCTCCTTGGCTCTGACCGGAGAGAATGCTTCTGCTGTATCGCATATGACTCCATGCCTGCTCTAACTGAAGAGTGCTACAGAACACAGAGCAGAGCGGAAGCAGCAGCTGTGACTGAGGAACAGTGGAGGAGAAATGCTAACCCCCCTCTGAGAGAACAAAAAGCAGCCTGACGTTGTGGCAGCAGCAGAAACAGCCTTTGTCTTGTCCTGCTTGGTTCACATGCTCCCCCCGTAGAAGAAATCagaagagaggagaccagaggagaggagccGCACTGAGCACTGACACACTGGCCTACTctaccagagagagaaagggttggCTGTTTGATGTGTGTTATCCTGTTGCTCTTCCCTGTGTGGATTCAGTACTTGGACAGCGCCAGAGCACTAGGTCCGCTCAGCAACACAGTGTGTATTTTTGCTGGTCGTGTGTTACAGTCTATGTGAAGTCTCACTCGTCGAGACTCCATCTCCAGGGAAGCCCTGGACCCCCATTCCCAGCCCTCCATGGCTCTCTCCCTGGCTCCCTGCAGCCCTCTCTCCCTGGGGACAGCAGACAGCATGGCCAGCCTGGAGCACCAGGGGGAGAAGCAGCTCTTTGAGAAGTTCTGGAAGGGGACGTTTAAAGCTGTGGCCACACCGAGACCAGAGAGCATCATCGTGGCAAGCATCACCGCCAGTAGGAAGGttatcagCACGGAGACAACAACCTGCCAGCCACTCAAAGCCgatgagagaaaaggggaggtCGCGGACACCAAGGTGGACACAACCACAGACAGAAATGGATGCATTAGAGACATAGGACGACACAAACATAGCAGTTATCATCGGACGCGGTGTGTGTCATTTGATGACGATCTCTCCCCTTGGCCCCACGCTCCCAAAGGGAAGAAAAAGAAAAGGAAAtcggagagaaagaggaagaggaaaagGTCCCCGTCCTACAGCCTGTCACCagtgaggaagaagaagaagaagaagaagaagaagaagaagagctcTAAGAAAAGCAAACGCCACAGGTATACCTCTAAAAAGACAAAGCACAGCTCTTCAAGCTTGAAACATAAGAGGAAGGGTGATCGAAAGCACAAAAAAAGCTCACGGAGTCACACGAAGCGGAGACGACGCTACCGGAGGTCAGAGTCAGAGAGTTCCACCTGGCGCTCCTCCAGCGCCGAGAGTGGCCATCATCTGCACAAATCAGTGAATCACCCTGTGTTGGGAGGCCTAGCAGCCCAGAGGGAGGACCCTAGTACAGCGCACCTGGACCACAGAGCGTTTGAGTGGGGGTCCGCCGCCAAGTCAGTCTGTAAAACGACTCCAATCTTTCGCTCCGTCCTTTCTACTGGCACCGACTTGCAGTCAAAACCTGGCAGTGAGGTTTTAAACACGACAGTAGTTCACCATCACACTCTGACCAATCAGAGCAAAGGACCACAGGATTACGATTCCGGGAATGACACGTCTTCACCACCGTCGACCAAAACCAGCATTTCACGGACAAACGTCATCGGTGACAAAAAGGTCTTGTGTCAAGCGCCGGCTTCCCCAGAGAAGCTGAAGTTTACAGATGGCGATAACGCATCCGACTCTGGGAACTCTGTGACCAGCTATGCTTCCCTGTGTAAACCTCTGCATGTGGAAGGTGGTTTGTCTACTCCCATTTTCAATGGGAACGGCAAGAGTGAGCCGGTAACAACCTCAGTATGTGGGGCCAAGGTGGGGAGACCTCAGAAGacagtctcttctctctctcctttgaggATGGGGGCCTCTTCACGTAAGCGGACTAGAACCAACTCGTCGAGCAGCAGAAGTAGATCCTCAGGGAGCTCAAGACACTCTGGACGCTACTCTCGAAGCCGATCACTGTCATCTGCCAGGTCGTACTCCCGTTCACCAAGCTACTTGGCTGGTTTGAGAAGGAAAGGTAGTGAGGGCAGTGGAAGGTCCAGAGGAAGCTACTCCAGATACAGTAAAGAGAGGATTCGAGAGAAGAAGAGGGACCCCAGCTCCGGTGAGAAGGATGTGAAGCACAGCAGTCAGAAGCGAAGCGGGAAGAGGCATAGACGCAGGTCCTACTCTCCAatgaggaaaaggaggagagattCACCCAGTCACCTGGAAGCCAGGAGGATAACTAGTGCCAGGAAGAGGCCCATCCCCTACTTCCGGCCCAGTCCTTCATCCAGCAGTCGCTCTACCAGTGTATCCTCTTGGAGCAGCCTCTTCACACGGAGTCACAGCCCTAGGTCCAGTCCTGGCCTCTGCCTCAGTAGTTCAAGGAGTAGGAGTAGGAGCAGGAGCCGAGGAAGAAGTAGGAGTAGGAGCTACTTCTCCTACCGGAGCTACAGTCGCAGCTCCTCTTGGAACTCCATCTTTGGTCGCCGGAACCGCAGTCAGAGCCGGAGTCGCAGCTATGACTCGTTGGACGGTTACAGCAAGGGCAAGAACCGGCACTGAGTTTTTTTTCAACAGCCTGAGGAGGTTACAGAGGAGCCTGCATCATCATTTCTCAATCTCCCAGCGGAAGTATGAGGTAATGTTTTCATCTCTTTGCGTCTTTTTTGTGTTAGATGCCTGAGCCAGACCCTTCAAGTaagtgtatttttttttgtgtcgTTATTTGTTCAACGATGTCTTGAATAGAGGCAGTTGTCTCGTCCATGATGTATTGAAGACAGAAACCACTGGAAATAGATTGTTTGTTTTCTTTGGTTGGTTTTTTTTTTCAGTCCGCTGTGTCCTCGTCATGCATTAGCATTCAAAATGGCCAGAGACTGTTTTTCCTTGAGACACTCTTCCTCGGACGTCTGTGTCCGAAACGAAGGATGGAGGAGCATTGTTCAATTTAACCCTCTGATAAACTCTTATTTTATAACAACTCTTAAGTTTCTGACCATTTCAGATCTGGGATGTGCACTACAAAGTTGCtttggggacagagggagggtgagagggagggtttTTCAGGAACATAGGAAAAGGTGTCCATCTCTGATCTCAGCTCTTAATGATGTGGAGCAAAAACATGCCTCCGAGAAATGAtgagaagggggaggaagaggaggaggcggAAGTCCCGATGCCAAACAAACTGCCTATCAGCTCAGATTTATTTATCCTCTAATCAAGTGGAAAACAATTGAAATTTAATTCCTTATAAGATGAATGATCAAACCACTGCACAGAAGGGCTGAAAAAGTGGGTTTTCATAAAAATGTCTGTCTTCATAACAGCTCCTCaaaagagattttttttttacactgtttTAGTAGCTGCTAGGTTGTCATATTTATTTATCTAGGTAGTTATTTATTAattcatatatttatttatttatgcaaATGATCTGTgttctatttattttattattttgaaTGAAACTTGAATAAGAGTGCAATGAGAGAGTGTTCAATGGTTTTTCTTCTCAGCATATGTTTGACAGAGAGGAGATTCACTATTGGATAAATCTGTTATTTTGTTATTCAGATTTTTTGTGTAACGGTCCCAAATAGCGCTGTTCAATAATGTGTTTGGTATTTCAGAAGCAGAATCAAACACACACTTCACCTCTCTTGTTTGCATAGTCCGCCCACCAAAGGTCAAGTTTTGAAACACACATTTTTGTGTCATGCATATTTATAACGTGTTTACAGTAATGTTCATGCTTTTGTGTTGCCTCTCAGCAATGGTCTATGTTTCTATGCAATGCCACcactaggcagggtagcctagtggttagagcgttggagtagtaaccgaaaggttgcaagttcgaatccccgagctgacaaggtacaaatctgttgttctgctcctgaacaggcagttaacccactgttcctaggctgtcat

Function

symbol description
srrm4 Predicted to enable mRNA binding activity. Involved in several processes, including mRNA splicing, via spliceosome; nervous system development; and regulation of RNA splicing. Acts upstream of or within axonogenesis; facial nucleus development; and neuron maturation. Part of U2-type spliceosomal complex. Is expressed in nervous system; neural plate; and neural tube. Orthologous to human SRRM4 (serine/arginine repetitive matrix 4).

NR:

description
serine/arginine repetitive matrix protein 4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606606.2 True 4152 mRNA 0.49 12 45061658 45152985

Neighbor

gene id symbol gene type direction distance location
LOC110526024 suds3 coding upstream 165676 44873385 ~ 44895982 (+)
LOC110526020 NA coding upstream 321086 44730067 ~ 44740687 (+)
LOC110526013 LOC106585235 coding upstream 712871 44345482 ~ 44348787 (+)
LOC110526014 NA coding upstream 721869 44337537 ~ 44339789 (+)
LOC110526012 LOC106585234 coding upstream 752298 44295614 ~ 44309360 (+)
LOC110526027 hspb8 coding downstream 2996 45155981 ~ 45178825 (+)
LOC110526028 ccdc60 coding downstream 34134 45187119 ~ 45236944 (+)
si:dkey-174n20.1 LOC106584900 coding downstream 494749 45647734 ~ 45654067 (+)
LOC110526036 LOC106584896 coding downstream 660413 45813398 ~ 45837739 (+)
LOC110526902 NA coding downstream 719834 45872819 ~ 45873709 (+)
G512188 NA non-coding upstream 3623 45057711 ~ 45058035 (+)
G511781 NA non-coding upstream 15738 45020247 ~ 45045920 (+)
G511647 NA non-coding upstream 311610 44749641 ~ 44750048 (+)
G511577 NA non-coding upstream 406090 44655225 ~ 44655568 (+)
G512277 NA non-coding downstream 54274 45207259 ~ 45207720 (+)
G512284 NA non-coding downstream 59797 45212782 ~ 45213075 (+)
G512295 NA non-coding downstream 76925 45229910 ~ 45230320 (+)
G512297 NA non-coding downstream 80069 45233054 ~ 45233283 (+)
G510416 NA other upstream 1403165 43657468 ~ 43658493 (+)
G509160 NA other upstream 2491489 42567105 ~ 42570169 (+)
G508559 dph7 other upstream 2929718 42129225 ~ 42131940 (+)
G507768 LOC105030512 other upstream 3590250 41469551 ~ 41471408 (+)
fbxl17 fbxl17 other upstream 4202136 40568637 ~ 40886427 (+)
G512192 LOC106584908 other downstream 31454 45184439 ~ 45185869 (+)
G512912 NA other downstream 482604 45635589 ~ 45636250 (+)
LOC110526042 LOC106584891 other downstream 1034015 46076084 ~ 46190292 (+)
G513501 NA other downstream 1206971 46359956 ~ 46360585 (+)

Expression


Co-expression Network