LOC110526027 (hspb8)


Basic Information

Item Value
gene id LOC110526027
gene name hspb8
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 45155981 ~ 45178825 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980186.1
GACCAATCGGTATAATGTCTCATAGAGGGTATTAAACTTCTAGGATACTAACTGGAGGGGTCGTTATAAATCAATGTCCTTGGGTTGAAACCGTTATTTTTGATGATCCAATCAGTAACTGTCATGAGCCCAACACGGGAAATTATCAAATTAACAACTTTTTCTCTCACATAGACTACTCAATATTTATAAAAGGTGTCAGCTTGGGGAGAGTAAACTTGGAAAGGGTAAACATTTTTTCTTACTTTTTTTCTTTGGGACAACGACCGGTAAACATGGCAGAAGGAGACTTCTACACTCTTGGAAGTAGGCAGAGGGTCCCCCGAGATCCGTTCAGAGAGAGTCCGTCAATCGCCTCCCGATTTATGGACGATGACTTTGGGATGTCCCCTTTCCCCGAAGACTTGTCAATGGACTGGCCCGGCTGGGCTCGGCCTAGCCGGCTCAGCACGCGGCTTTCCGCACCGTTTACAGGCACTCTGCGCACTGGGTTTCAGCCAACGCGCGCATCGACTGGGCAGACGCCGGTGTATTGCACGAGATACAGCGAGTCCCCCCGCAGCTCTCCGACCCAAACACCGGGAGAGCCCTGGAAAGTGTGTGTGAACGTCCACAGCTTTAACCCAGAGGAACTTAATGTCAAAACCAAAGATGGGTTTGTAGAAGTGTCAGGAAAACATGAAGAGAAGCAAGAGGAAGGAGGTATAGTGACAAAGAATTTCACAAAGAAGATACACATAGGAACACTTGGCAGCTCATATGGAAACTCCAGCGACGGACAGAGAGCCTTAAATGGCCAAGCTGCTTCACAAAGTCCAGAGACCAGTCTGTCTGgggaTTCCAATCGACGTGGACCCTCTGACGGTCTTTGCCTCCTTGTCGCCAGAGGGTGTGTTGATCATCGAGGCACGGCAGAGCCCTCCCTACTACCTCTTCAGTAACGAAGGTCctcagggagagaggcaggaggccACCATGGTCTAGGGTGAAGTCCAGGACCGAGCTCTCTCGCCTGGGGAGACACAGGCTCACCCCGGGCCCCCTCGGGACATAATAGAGCATCCAGCAGACTAGAGAAAGGGCTAACACAGGTTCAAAGCCATCGAGACCTTCTGCGTTATGTTGTTGGGGTgggtccgaaatggcaccctattcactattaaGTAGTGCACTGAATATGGTCCCAAAGAAGCACTCTGATTTTCGTTTTGAGTGTTAAGTAATCACTCAATCACTCCcctaaaatatataataataacatGGTGTTTGTGTATCTCTTGGCAGCGAAGGCTATTTGGATCTGTCACAGATTTAATTAAAAGTCCCAAACTAAATCAATCCTAATGTCTCACAGTGGAGTTGCTATGTACAGTATGCATCCAGTCCCAGATGCAACACTGAACCGACTCCAGATCCTAAACTGAGCAGCCTAGAAGCCAGCTGGGGCCCATTCTGCCTGGTTCATCCTGTGATGTCTTGGTTTTCTATCCGTATCCCATTTGTCATGAAAACGTCACTTGACAGAATGCTTCATATTATGTTAAATGTGTAATTGAAAGAAGCACATTCAAATGGATCATCAAATAAAGTCATCCCATATGGCTTCATTTCTGAGTGGGAAGACTTAATGAAAGGGATATTCCCATCATTATAGTGTGTAACCTACTGTACGTGTGTGTTGAAACCGTATTCTACCCTAATGCAGGCCTACTGTCTGTAAATACATTGCACTTAACAGTACGTGCCAACCCATAGACACATATATTTGAGAGCCATGATTACCCTACCTAGAGGTCTTACAAACGGATGTTCGCTGCATTTTTCTATTTGTGCATGTAATGATGACGCTGTGCTCGTTCTTGGTGCAAAGGGAATGCATTTTTTGCTagacatctcctctccctcccccctctccttcctctgccctccctcatctccttctctcctcctttccctcatGTCTTTGTATTTGTTTATGCAATAAAACCTCCCATCAATCCCA
>XM_021606608.2
ACCAATCGGTATAATGTCTCATAGAGGGTATTAAACTTCTAGGATACTAACTGGAGGGGTCGTTATAAATCAATGTCCTTGGGTTGAAACCGTTATTTTTGATGATCCAATCAGTAACTGTCATGAGCCCAACACGGGAAATTATCAAATTAACAACTTTTTCTCTCACATAGACTACTCAATATTTATAAAAGGTGTCAGCTTGGGGAGAGTAAACTTGGAAAGGGTAAACATTTTTTCTTACTTTTTTTCTTTGGGACAACGACCGGTAAACATGGCAGAAGGAGACTTCTACACTCTTGGAAGTAGGCAGAGGGTCCCCCGAGATCCGTTCAGAGAGAGTCCGTCAATCGCCTCCCGATTTATGGACGATGACTTTGGGATGTCCCCTTTCCCCGAAGACTTGTCAATGGACTGGCCCGGCTGGGCTCGGCCTAGCCGGCTCAGCACGCGGCTTTCCGCACCGTTTACAGGCACTCTGCGCACTGGGTTTCAGCCAACGCGCGCATCGACTGGGCAGACGCCGGTGTATTGCACGAGATACAGCGAGTCCCCCCGCAGCTCTCCGACCCAAACACCGGGAGAGCCCTGGAAAGTGTGTGTGAACGTCCACAGCTTTAACCCAGAGGAACTTAATGTCAAAACCAAAGATGGGTTTGTAGAAGTGTCAGGAAAACATGAAGAGAAGCAAGAGGAAGGAGGTATAGTGACAAAGAATTTCACAAAGAAGATACAgaTTCCAATCGACGTGGACCCTCTGACGGTCTTTGCCTCCTTGTCGCCAGAGGGTGTGTTGATCATCGAGGCACGGCAGAGCCCTCCCTACTACCTCTTCAGTAACGAAGGTCctcagggagagaggcaggaggccACCATGGTCTAGGGTGAAGTCCAGGACCGAGCTCTCTCGCCTGGGGAGACACAGGCTCACCCCGGGCCCCCTCGGGACATAATAGAGCATCCAGCAGACTAGAGAAAGGGCTAACACAGGTTCAAAGCCATCGAGACCTTCTGCGTTATGTTGTTGGGGTgggtccgaaatggcaccctattcactattaaGTAGTGCACTGAATATGGTCCCAAAGAAGCACTCTGATTTTCGTTTTGAGTGTTAAGTAATCACTCAATCACTCCcctaaaatatataataataacatGGTGTTTGTGTATCTCTTGGCAGCGAAGGCTATTTGGATCTGTCACAGATTTAATTAAAAGTCCCAAACTAAATCAATCCTAATGTCTCACAGTGGAGTTGCTATGTACAGTATGCATCCAGTCCCAGATGCAACACTGAACCGACTCCAGATCCTAAACTGAGCAGCCTAGAAGCCAGCTGGGGCCCATTCTGCCTGGTTCATCCTGTGATGTCTTGGTTTTCTATCCGTATCCCATTTGTCATGAAAACGTCACTTGACAGAATGCTTCATATTATGTTAAATGTGTAATTGAAAGAAGCACATTCAAATGGATCATCAAATAAAGTCATCCCATATGGCTTCATTTCTGAGTGGGAAGACTTAATGAAAGGGATATTCCCATCATTATAGTGTGTAACCTACTGTACGTGTGTGTTGAAACCGTATTCTACCCTAATGCAGGCCTACTGTCTGTAAATACATTGCACTTAACAGTACGTGCCAACCCATAGACACATATATTTGAGAGCCATGATTACCCTACCTAGAGGTCTTACAAACGGATGTTCGCTGCATTTTTCTATTTGTGCATGTAATGATGACGCTGTGCTCGTTCTTGGTGCAAAGGGAATGCATTTTTTGCTagacatctcctctccctcccccctctccttcctctgccctccctcatctccttctctcctcctttccctcatGTCTTTGTATTTGTTTATGCAATAAAACCTCCCATCAATCCCA

Function

symbol description
hspb8 Predicted to enable protein homodimerization activity. Predicted to be involved in cellular response to unfolded protein. Predicted to be part of chaperone complex. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including cephalic musculature; immature eye; midbrain hindbrain boundary neural rod; nervous system; and pericardial region. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease axonal type 2L and distal hereditary motor neuronopathy type 2A. Orthologous to human HSPB8 (heat shock protein family B (small) member 8).

NR:

description
heat shock protein beta-8

GO: NA

KEGG:

id description
K08879 HSPB8; heat shock protein beta-8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980186.1 False 2002 mRNA 0.47 4 45155981 45178825
XM_021606608.2 True 1901 mRNA 0.47 3 45155982 45178825

Neighbor

gene id symbol gene type direction distance location
LOC110526025 srrm4 coding upstream 2996 45061658 ~ 45152985 (+)
LOC110526024 suds3 coding upstream 259999 44873385 ~ 44895982 (+)
LOC110526020 NA coding upstream 415409 44730067 ~ 44740687 (+)
LOC110526013 LOC106585235 coding upstream 807194 44345482 ~ 44348787 (+)
LOC110526014 NA coding upstream 816192 44337537 ~ 44339789 (+)
LOC110526028 ccdc60 coding downstream 8294 45187119 ~ 45236944 (+)
si:dkey-174n20.1 LOC106584900 coding downstream 468909 45647734 ~ 45654067 (+)
LOC110526036 LOC106584896 coding downstream 634573 45813398 ~ 45837739 (+)
LOC110526902 NA coding downstream 693994 45872819 ~ 45873709 (+)
LOC118964875 NA coding downstream 721094 45899919 ~ 45901120 (+)
G512188 NA non-coding upstream 97946 45057711 ~ 45058035 (+)
G511781 NA non-coding upstream 110061 45020247 ~ 45045920 (+)
G511647 NA non-coding upstream 405933 44749641 ~ 44750048 (+)
G511577 NA non-coding upstream 500413 44655225 ~ 44655568 (+)
G512277 NA non-coding downstream 28434 45207259 ~ 45207720 (+)
G512284 NA non-coding downstream 33957 45212782 ~ 45213075 (+)
G512295 NA non-coding downstream 51085 45229910 ~ 45230320 (+)
G512297 NA non-coding downstream 54229 45233054 ~ 45233283 (+)
G510416 NA other upstream 1497488 43657468 ~ 43658493 (+)
G509160 NA other upstream 2585812 42567105 ~ 42570169 (+)
G508559 dph7 other upstream 3024041 42129225 ~ 42131940 (+)
G507768 LOC105030512 other upstream 3684573 41469551 ~ 41471408 (+)
fbxl17 fbxl17 other upstream 4296459 40568637 ~ 40886427 (+)
G512192 LOC106584908 other downstream 5614 45184439 ~ 45185869 (+)
G512912 NA other downstream 456764 45635589 ~ 45636250 (+)
LOC110526042 LOC106584891 other downstream 1008175 46076084 ~ 46190292 (+)
G513501 NA other downstream 1181131 46359956 ~ 46360585 (+)

Expression


Co-expression Network