si:dkey-174n20.1 (LOC106584900)


Basic Information

Item Value
gene id si:dkey-174n20.1
gene name LOC106584900
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 45647734 ~ 45654067 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606623.2
gggcagaaagacagatttttaccttggcagctcggggattcgattttgcaacctttcggttacaagtccaacgccctaaccactagaCTGCCTGCCACCCCAAATATAGGTGGCAATGCTGGCATCGGCAAAGAGACGGCGGTTGCCTTGGCGATGCGAGGTGCCCGTGTCATCATAGCTTGCCGTGACGTGGACAAGGCTGAAAAGGCGGTGAGGGAGATCAAGATCAGGGGTCACAACGTTAACGTCCATCACATGGAGTTGGATTTGGCCAACATGCGCTCCATACAAGACTTCTGTAAGACCTTccttcagagagagaagaggttggACATCCTCATCAACAacgcagCCATGCCCAGCGTGCTGGACTGGACGGAGGACAACTTCAGCATGTGTTTCGGTGTGAACCACCTCGGCCACTTCCTGTTGACCAACCTACTGTTGGGCCGCCTGAAGGATTCGGCCCCCAGCCGCGTGGTCACGCTCACCTGCTCCAACTACAAGTACCAGAAGTTAGACTTCCAGGACCTCAACTATAACCTGCTGCCCTTCTTCACCTACTGCCGTAGCAAGCTGGCCAACATCTACTTCAGCCAGGAGCTGGGTAGAATGATGGAGGGCAAAGGAGTGACGACATACGCTGTGCACCCTGGCTATGTTCAGAGCAGTTGGACAGGTCACTACTCCATCCTGTTCCGTATGCTGGTGCAGGTGATCATGTTCATGTTTTTCGTGCCGTGTGAGATGGGCGCTCAGACCGTGGTCTACTGCGCCGTGTCGGACGAGGCTGCCAAGCACAGTGGGGGATACTTCACCGACTGCCAGCCCGCCACGCTGAGACCTTTCGCCAGAGACGCCGGTGTGGCCAAAAAACTGTGGGAGGCCAGCGAGAGGCTGGTCAAACTGGCCTGAGAAAGGATGAAGGCTTCGTAAGGCTTGTAGATGTTTTTAGCCTGGAATACTCACTGAATATCACTCTGTTTTACTATAGTTTTTTAAAAACACAAACAATGGTTAAGGGGTATGATATTCAGTTTTGGATTTCCAGTCCAGGAGTGTTTTTCCAGGTTTGTTGAAATATTAATGACTcaaataacaaaaatacattTCCTCACACTGTTGGCTTGCGATGTTTCACTGTCATGATGAATAAAAGTTACTGactgttaatgtgttaatgtgttaatgtgtcaAAGCATTAAGAAGGTCAGTAGACCAACATGTTAACGATCAAATTATACTATGACGCTTTGCAAGAGAGAAATGTGTGGGGAAATGATTTGGGTCAAACTAGCCTGAAATTacttttattgtttttgttattgttttttctAACCATTGAATTGTCTTCAGGGGACCTTATTGTGAAATATgtctgtgtttattttttatgaatggGGAAAGcattgtttaacatttttatggtTAGCCTTTTTATTGCTGTCCTGAAACACTTGAATGGTGATGTGAAACATGGCTGCTTTTTCTTCTGTTGCAATAAAATCTGTGGCAATAAAATCC
>XM_036980192.1
AGAAAGACGACCGTTTCCAAATAATCTGTGGGACAACAACAATATTTGAATCCCCAAATCGTCTGTTTGACAGCGCGCCGCAAAGAAAAATGCCGATCACGCCCCATTGATCTTTGTCTGCAACCCACAGGAATCCAGCCCTGTCTAGTGGCAATGCTGGCATCGGCAAAGAGACGGCGGTTGCCTTGGCGATGCGAGGTGCCCGTGTCATCATAGCTTGCCGTGACGTGGACAAGGCTGAAAAGGCGGTGAGGGAGATCAAGATCAGGGGTCACAACGTTAACGTCCATCACATGGAGTTGGATTTGGCCAACATGCGCTCCATACAAGACTTCTGTAAGACCTTccttcagagagagaagaggttggACATCCTCATCAACAacgcagCCATGCCCAGCGTGCTGGACTGGACGGAGGACAACTTCAGCATGTGTTTCGGTGTGAACCACCTCGGCCACTTCCTGTTGACCAACCTACTGTTGGGCCGCCTGAAGGATTCGGCCCCCAGCCGCGTGGTCACGCTCACCTGCTCCAACTACAAGTACCAGAAGTTAGACTTCCAGGACCTCAACTATAACCTGCTGCCCTTCTTCACCTACTGCCGTAGCAAGCTGGCCAACATCTACTTCAGCCAGGAGCTGGGTAGAATGATGGAGGGCAAAGGAGTGACGACATACGCTGTGCACCCTGGCTATGTTCAGAGCAGTTGGACAGGTCACTACTCCATCCTGTTCCGTATGCTGGTGCAGGTGATCATGTTCATGTTTTTCGTGCCGTGTGAGATGGGCGCTCAGACCGTGGTCTACTGCGCCGTGTCGGACGAGGCTGCCAAGCACAGTGGGGGATACTTCACCGACTGCCAGCCCGCCACGCTGAGACCTTTCGCCAGAGACGCCGGTGTGGCCAAAAAACTGTGGGAGGCCAGCGAGAGGCTGGTCAAACTGGCCTGAGAAAGGATGAAGGCTTCGTAAGGCTTGTAGATGTTTTTAGCCTGGAATACTCACTGAATATCACTCTGTTTTACTATAGTTTTTTAAAAACACAAACAATGGTTAAGGGGTATGATATTCAGTTTTGGATTTCCAGTCCAGGAGTGTTTTTCCAGGTTTGTTGAAATATTAATGACTcaaataacaaaaatacattTCCTCACACTGTTGGCTTGCGATGTTTCACTGTCATGATGAATAAAAGTTACTGactgttaatgtgttaatgtgttaatgtgtcaAAGCATTAAGAAGGTCAGTAGACCAACATGTTAACGATCAAATTATACTATGACGCTTTGCAAGAGAGAAATGTGTGGGGAAATGATTTGGGTCAAACTAGCCTGAAATTacttttattgtttttgttattgttttttctAACCATTGAATTGTCTTCAGGGGACCTTATTGTGAAATATgtctgtgtttattttttatgaatggGGAAAGcattgtttaacatttttatggtTAGCCTTTTTATTGCTGTCCTGAAACACTTGAATGGTGATGTGAAACATGGCTGCTTTTTCTTCTGTTGCAATAAAATCTGTGGCAATAAAATCC
>XM_021606621.2
ACTGCGGAATGTTTCCACGCATGCGCATTTACACATTGTATGTGAGCTAGCAGGCTAGCAACTGGTTATCAATATATTTTGAAATACGTTATTGGAGCAGTTTTTCCTTTTATTGTTTGATAGGGAAATTTGAATTCGTTATGATCTGTCACTAAGACGAATCGTGTCTATGTACGCCATGGATGTATCGTGTCTGATGTCAACCAGAATGCTAACTACAGTTTACTAGCCGCTAGTTAGTTCATTCATTGACGTCATTTCAAGGAAAGCGTCCATGATTATTTTATGTGGCTAACCAGCTCGCttacaaaaatgtatattttgttcACGATTATTACTTCATTAgtttgctatttgattttgagATGGATGAAAATGAGGAGGTATTGCACGGACTTGAAAAGACTGGATGGGAAAACAGTTGTCATTACTGGTGGCAATGCTGGCATCGGCAAAGAGACGGCGGTTGCCTTGGCGATGCGAGGTGCCCGTGTCATCATAGCTTGCCGTGACGTGGACAAGGCTGAAAAGGCGGTGAGGGAGATCAAGATCAGGGGTCACAACGTTAACGTCCATCACATGGAGTTGGATTTGGCCAACATGCGCTCCATACAAGACTTCTGTAAGACCTTccttcagagagagaagaggttggACATCCTCATCAACAacgcagCCATGCCCAGCGTGCTGGACTGGACGGAGGACAACTTCAGCATGTGTTTCGGTGTGAACCACCTCGGCCACTTCCTGTTGACCAACCTACTGTTGGGCCGCCTGAAGGATTCGGCCCCCAGCCGCGTGGTCACGCTCACCTGCTCCAACTACAAGTACCAGAAGTTAGACTTCCAGGACCTCAACTATAACCTGCTGCCCTTCTTCACCTACTGCCGTAGCAAGCTGGCCAACATCTACTTCAGCCAGGAGCTGGGTAGAATGATGGAGGGCAAAGGAGTGACGACATACGCTGTGCACCCTGGCTATGTTCAGAGCAGTTGGACAGGTCACTACTCCATCCTGTTCCGTATGCTGGTGCAGGTGATCATGTTCATGTTTTTCGTGCCGTGTGAGATGGGCGCTCAGACCGTGGTCTACTGCGCCGTGTCGGACGAGGCTGCCAAGCACAGTGGGGGATACTTCACCGACTGCCAGCCCGCCACGCTGAGACCTTTCGCCAGAGACGCCGGTGTGGCCAAAAAACTGTGGGAGGCCAGCGAGAGGCTGGTCAAACTGGCCTGAGAAAGGATGAAGGCTTCGTAAGGCTTGTAGATGTTTTTAGCCTGGAATACTCACTGAATATCACTCTGTTTTACTATAGTTTTTTAAAAACACAAACAATGGTTAAGGGGTATGATATTCAGTTTTGGATTTCCAGTCCAGGAGTGTTTTTCCAGGTTTGTTGAAATATTAATGACTcaaataacaaaaatacattTCCTCACACTGTTGGCTTGCGATGTTTCACTGTCATGATGAATAAAAGTTACTGactgttaatgtgttaatgtgttaatgtgtcaAAGCATTAAGAAGGTCAGTAGACCAACATGTTAACGATCAAATTATACTATGACGCTTTGCAAGAGAGAAATGTGTGGGGAAATGATTTGGGTCAAACTAGCCTGAAATTacttttattgtttttgttattgttttttctAACCATTGAATTGTCTTCAGGGGACCTTATTGTGAAATATgtctgtgtttattttttatgaatggGGAAAGcattgtttaacatttttatggtTAGCCTTTTTATTGCTGTCCTGAAACACTTGAATGGTGATGTGAAACATGGCTGCTTTTTCTTCTGTTGCAATAAAATCTGTGGCAATAAAATCC
>XM_021606622.2
ATTTTAGCTATGTAGACGTAGCGCCAATCGCACATAGCGTAGCGACAATCATAGTAGTAAGTCTGTTAGCTCAGAGGTTTTCAAGCTTTTCTTGCCCAGGGACCGCCACCCAGTCGAACCGGCGACCCCCATTAGCAAAACAATTGAAATCATGTCTTTTCATCAGGTGGCAATGCTGGCATCGGCAAAGAGACGGCGGTTGCCTTGGCGATGCGAGGTGCCCGTGTCATCATAGCTTGCCGTGACGTGGACAAGGCTGAAAAGGCGGTGAGGGAGATCAAGATCAGGGGTCACAACGTTAACGTCCATCACATGGAGTTGGATTTGGCCAACATGCGCTCCATACAAGACTTCTGTAAGACCTTccttcagagagagaagaggttggACATCCTCATCAACAacgcagCCATGCCCAGCGTGCTGGACTGGACGGAGGACAACTTCAGCATGTGTTTCGGTGTGAACCACCTCGGCCACTTCCTGTTGACCAACCTACTGTTGGGCCGCCTGAAGGATTCGGCCCCCAGCCGCGTGGTCACGCTCACCTGCTCCAACTACAAGTACCAGAAGTTAGACTTCCAGGACCTCAACTATAACCTGCTGCCCTTCTTCACCTACTGCCGTAGCAAGCTGGCCAACATCTACTTCAGCCAGGAGCTGGGTAGAATGATGGAGGGCAAAGGAGTGACGACATACGCTGTGCACCCTGGCTATGTTCAGAGCAGTTGGACAGGTCACTACTCCATCCTGTTCCGTATGCTGGTGCAGGTGATCATGTTCATGTTTTTCGTGCCGTGTGAGATGGGCGCTCAGACCGTGGTCTACTGCGCCGTGTCGGACGAGGCTGCCAAGCACAGTGGGGGATACTTCACCGACTGCCAGCCCGCCACGCTGAGACCTTTCGCCAGAGACGCCGGTGTGGCCAAAAAACTGTGGGAGGCCAGCGAGAGGCTGGTCAAACTGGCCTGAGAAAGGATGAAGGCTTCGTAAGGCTTGTAGATGTTTTTAGCCTGGAATACTCACTGAATATCACTCTGTTTTACTATAGTTTTTTAAAAACACAAACAATGGTTAAGGGGTATGATATTCAGTTTTGGATTTCCAGTCCAGGAGTGTTTTTCCAGGTTTGTTGAAATATTAATGACTcaaataacaaaaatacattTCCTCACACTGTTGGCTTGCGATGTTTCACTGTCATGATGAATAAAAGTTACTGactgttaatgtgttaatgtgttaatgtgtcaAAGCATTAAGAAGGTCAGTAGACCAACATGTTAACGATCAAATTATACTATGACGCTTTGCAAGAGAGAAATGTGTGGGGAAATGATTTGGGTCAAACTAGCCTGAAATTacttttattgtttttgttattgttttttctAACCATTGAATTGTCTTCAGGGGACCTTATTGTGAAATATgtctgtgtttattttttatgaatggGGAAAGcattgtttaacatttttatggtTAGCCTTTTTATTGCTGTCCTGAAACACTTGAATGGTGATGTGAAACATGGCTGCTTTTTCTTCTGTTGCAATAAAATCTGTGGCAATAAAATCC

Function

NR:

description
retinol dehydrogenase 11-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606623.2 False 1524 mRNA 0.47 4 45647734 45654067
XM_036980192.1 False 1562 mRNA 0.47 4 45648441 45654067
XM_021606621.2 False 1848 mRNA 0.44 4 45648639 45654067
XM_021606622.2 True 1581 mRNA 0.47 4 45649148 45654067

Neighbor

gene id symbol gene type direction distance location
LOC110526028 ccdc60 coding upstream 410790 45187119 ~ 45236944 (+)
LOC110526027 hspb8 coding upstream 468909 45155981 ~ 45178825 (+)
LOC110526025 srrm4 coding upstream 494749 45061658 ~ 45152985 (+)
LOC110526024 suds3 coding upstream 751752 44873385 ~ 44895982 (+)
LOC110526020 NA coding upstream 907162 44730067 ~ 44740687 (+)
LOC110526036 LOC106584896 coding downstream 159331 45813398 ~ 45837739 (+)
LOC110526902 NA coding downstream 218752 45872819 ~ 45873709 (+)
LOC118964875 NA coding downstream 245852 45899919 ~ 45901120 (+)
LOC110525032 NA coding downstream 304363 45958430 ~ 45959299 (+)
LOC110526904 NA coding downstream 314397 45968464 ~ 45972013 (+)
G512916 NA non-coding upstream 4377 45642804 ~ 45643357 (+)
G512914 NA non-coding upstream 8286 45637367 ~ 45639448 (+)
G512913 NA non-coding upstream 10650 45636848 ~ 45637084 (+)
G512911 NA non-coding upstream 13395 45634086 ~ 45634339 (+)
G512910 NA non-coding upstream 14000 45633260 ~ 45633734 (+)
G512988 NA non-coding downstream 90882 45744949 ~ 45745157 (+)
G513021 NA non-coding downstream 136599 45790666 ~ 45793785 (+)
G513024 NA non-coding downstream 143434 45797501 ~ 45797808 (+)
G513030 NA non-coding downstream 153948 45808015 ~ 45808239 (+)
G513033 NA non-coding downstream 197166 45851233 ~ 45863183 (+)
G512912 NA other upstream 11484 45635589 ~ 45636250 (+)
G512192 LOC106584908 other upstream 461865 45184439 ~ 45185869 (+)
G510416 NA other upstream 1989241 43657468 ~ 43658493 (+)
G509160 NA other upstream 3077565 42567105 ~ 42570169 (+)
LOC110526042 LOC106584891 other downstream 532933 46076084 ~ 46190292 (+)
G513501 NA other downstream 705889 46359956 ~ 46360585 (+)
G513745 NA other downstream 1246494 46900561 ~ 46901123 (+)
G514464 NA other downstream 1272775 46926842 ~ 46927714 (+)
G514499 NA other downstream 1368227 47022294 ~ 47023092 (+)

Expression


Co-expression Network