LOC110526036 (LOC106584896)


Basic Information

Item Value
gene id LOC110526036
gene name LOC106584896
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 45813398 ~ 45837739 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606627.2
tctctctctgtcagtcgcTCTGACACTCAACGGAATCACACTCAACaccacactctcactcactcactcactctttttgacacagaggcagagacacacacacatatcctcaGTGTAACGCGGGGCAAGCACACCACAAACAGCAAAGAGGAAAGAGGAAGAAAaggaaggagggaaagaaaggaggagaaagggaaaaCATTGAGTTATCTAACACTTAGATTTTCTCAGAGGCTTTGAAAGGAGATCAGACACAGAGGAGTTGAGAGAAGAGGAAAACAGGAGGAAGACAGCGGAAACCCTAGACACAGGTTCAGTGTCACAGTGACTTAGGCTCTTCACTGAAGACCCCTGGATCCTGAACCCATTTCACCTAGGATCCcctacccccaccctcctcctcgCCCCAGCCCCACAGCCTGTGGGTATCTtcctgtacctgtgtgtgtgtacctccccctcctcaccctcccacCTCCAGAGCCCATAGTCCACCATGCTGTGGACTGTTCTCCTAGCCCTGCTGGTTCTCCTCCTGCTGCAGACCCAGCTATGTGTCTGTCTACGGGTGCTCAGAGTTGCCGGCTATTCTTCCccctcatcctccccctctcgTAATGCCACCAAGCAGCGACTACCTGGAGCCATCATCATCGGCGTGCGTAAAGGTGGCACCAGGGCCCTTCTGGAGATGCTCAACCTCCATCCGGACGTAGAGGTGGCCAAGGCTGAGGTGCACTACTTCAATGTGGAAGAGCACTACCGGCGTGGGCTGGCGTGGTATCGTGCCCAGATGCCCTTCACCCTGCCTGGGCAAGTGACGGTGGAGAAAACCCCTGGCTACTTTTCCTCTCCCCAGGTCCCTCAGCGGGTCTGGGAGATGAACCCTGCTGTCCGACTCCTGCTGATCGTCCGGGACCCCGCTGAGCGCCTCGTCTCCGACTACACCCAGGTTCTCCATAATAGGGTGACCCGCCACAAGCCCTACAAGTCTCTAGAAGAGCTGCTGCTCCGCCAGGGCCACATTGACCCGGCCTACAAAGCCCTGCAGAGGAGTCTGTACCACCAACACCTGGACCGCTGGCTGGAAGTCTTCCCCAGGGAGCAGGTCCATGTGGTGGACGGAGAGGCCCTCATCAGAGACCCCTTCCCAGAGCTCCGGAGGGCGGAGAGGTTCCTGGACCTGCTGCCCCGCATCACTCCCTCCAACTTCTACTTCAACACAACTAAAGgtttctactgtctcctctctgctgggGGCCATGACAAGTGTCTGGATGAGTCCAAGGGGAGGCCCCACGCTCCTCTCAGCTCCCGGGCCTTCAGGAAGCTCTGCCGATACTTCAAAGAACCCAACCGCCTGTTCTTTGAAATGGTGGGACGTTCCTTCTCCTGGTGCTGACTGTGCATCAAGAAACAAAAGGCCCTTTATTGCTCTGATACCACCTTtaatgggacagagagaggggacagacaggGCCAACTGGAGATATTGGCCATAATAGCAAATATTTGGGATGCCTTTGAAATGGTCACCTGTTCCctatgtgcactacttttgggcaGAGAGGGTACCATTTAGAACGTAATCTTAGAGACTCTTAGAGACACTAAGAGCAGGTCAACAGTGAAAAGACATTGGCCTGTGTGAAGTTCCTGTTGATTGATTGCACAGATAGATAGATTGGTGTGTTGACTGTCAGGTAGGGGGGTGGATGGGATGAATGGATGAATAGATTGCTGTGCAGACTGTTGGTTGTGCGGATGGATTCATTTATGTGTCAATTGAAGGTTGTGGGTGGATGAATTGACTGAGAGATGAAAGGATAAAACCACAGATGCACACAGACGATTTTAAAGATCTTTAGAGGTGTTACGTTTTTAATGTTCTCAATTGTCTTACTGTCAATGAGCTGAACCAAGCCAGGCCTGGGAGTGAAAAGCACAACAAGCATAGACTGTATAAGATAACTCTCACTGAGGGACACTATTTCTAACTACCCATAGAAAAAGATGGTGGGTACATTCAATATGGCAGCTGGTCCACCCATCACggaacattgacttgaatgggaatatccATTCTAgtgatctgttttttttaaatcgtaCTACCTGCTGGAGAACATGAACTGAAGTGCCcattctctaatactgtatgccTGGTGGTCCTAATAGCACCTGATCATGACTCTTGCTGGTGTCTATCAATGTTGGCCTTGGTTGCACAAACTGGAATGAAATCGAGTGtaagaaaataattacaataaacTGTGCCATACAATTGTATCGTGAACAATCACGACAAAAACAAATCTTGTCATTTTGATGGTCATTAAAATGAGTTTCAGAGCAGATACCATTGGAGGAAATGTAGAAGTGTACAAAAAATAGAGGGTAGAAGAATGCTTTGAAATTAGATGGGGCTTATTGTTGCACTATAACTGAATGCTTAATTGCATAAAAGGTTAGTCCATCTGAAGATCTACTGTACCCATATGAAGCTATTTCAAACCGAGTCTGAAGATTGAGACTGCTTACCATTTTCACAAAATCGTTTACCATTGTAAAAAGTATAACTGTGAGCTAAAATAATGTCCTCATTTAGATAATCATGTGTACTTATTCTAGTTATTATTCTAATATTTTACTATCAAATGTTCAATATATTTTTGGGATTGTTGAATTTAGATTTTAAGGTGTTTGAGCTGTAATGCATTGTAAGTATGTTTTCTAAAATCTTCTTcaataaatgtgtactgttgtaCTTTAA

Function

NR:

description
heparan sulfate glucosamine 3-O-sulfotransferase 1-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008146 sulfotransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606627.2 True 2773 mRNA 0.47 5 45813398 45837739

Neighbor

gene id symbol gene type direction distance location
si:dkey-174n20.1 LOC106584900 coding upstream 159331 45647734 ~ 45654067 (+)
LOC110526028 ccdc60 coding upstream 576454 45187119 ~ 45236944 (+)
LOC110526027 hspb8 coding upstream 634573 45155981 ~ 45178825 (+)
LOC110526025 srrm4 coding upstream 660413 45061658 ~ 45152985 (+)
LOC110526024 suds3 coding upstream 917416 44873385 ~ 44895982 (+)
LOC110526902 NA coding downstream 35080 45872819 ~ 45873709 (+)
LOC118964875 NA coding downstream 62180 45899919 ~ 45901120 (+)
LOC110525032 NA coding downstream 120691 45958430 ~ 45959299 (+)
LOC110526904 NA coding downstream 130725 45968464 ~ 45972013 (+)
LOC110526042 LOC106584891 coding downstream 238345 46076084 ~ 46190292 (+)
G513030 NA non-coding upstream 5159 45808015 ~ 45808239 (+)
G513024 NA non-coding upstream 15590 45797501 ~ 45797808 (+)
G513021 NA non-coding upstream 19613 45790666 ~ 45793785 (+)
G512988 NA non-coding upstream 68241 45744949 ~ 45745157 (+)
G512916 NA non-coding upstream 170041 45642804 ~ 45643357 (+)
G513033 NA non-coding downstream 13494 45851233 ~ 45863183 (+)
G513043 LOC100136024 non-coding downstream 66354 45904093 ~ 45906563 (+)
G513363 NA non-coding downstream 295459 46133198 ~ 46141623 (+)
G513377 NA non-coding downstream 355689 46193428 ~ 46193656 (+)
G512912 NA other upstream 177148 45635589 ~ 45636250 (+)
G512192 LOC106584908 other upstream 627529 45184439 ~ 45185869 (+)
G510416 NA other upstream 2154905 43657468 ~ 43658493 (+)
G509160 NA other upstream 3243229 42567105 ~ 42570169 (+)
G513501 NA other downstream 522217 46359956 ~ 46360585 (+)
G513745 NA other downstream 1062822 46900561 ~ 46901123 (+)
G514464 NA other downstream 1089103 46926842 ~ 46927714 (+)
G514499 NA other downstream 1184555 47022294 ~ 47023092 (+)

Expression


Co-expression Network