LOC110526049 (LOC106570833)


Basic Information

Item Value
gene id LOC110526049
gene name LOC106570833
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 46542604 ~ 46567635 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606649.2
TTCAGTTGGCCGCTTGGGCACGGGGCATGTGGCGAGCATGCCCTCAAACAAGCACAGCACATACGCACGGAATTTAAGTAAATAAAGATACTACTTCTTCGTGGAGAAAACATTCTTCAATAGAACGAAGGAATGGAGTTCCCTGTGGACGGCCTGGCCAGCGTGACCCAAGAGGTCCTGGAGAGATCAGCCCAGGACTACATGAACAGCATCCTCCACAGCAATCCAGACTCACCTGCACATCTCACCCTCGCCAACAACACACAGGTGCCCATTGGGCTTTCCAATGTGGGTTTCGTCCCTCTGTATGGAGCCGACCTGAGACAGAAAGTCCTCGCCCTGTTCTCCCCACAGGACCAGTTTACAGCGGTGGGGCTGTACTTGTTGGATCGATGGTGGTCACTGGAGGACATCCTAAAAACAGCAGACCCTGCCAGAGATGGATGTGTGGAGGTGGAGACTCTAGGGGAGAGGATAGTCCTGTACATTTTAAATCGTGTGGTGTACAGAGCCATGGAAATGAGTTCAGACGAACTACCTTTCCTCTGCCACGGGGAGAGCGACAACGCCAAGATCCTCTGGAAAGACGGACAGGCAGTCGGCTTCTACTCAGTCAAACCTTCAGGCAGCTTGTGCAGTACCTTCTTAACCCAGTGCTATCAGCTTCCTATCATGGACTCCATATTCGTCAGGAAGTGTCACCGTGACAACGGCCTGGGCCTTCAAATGCTGGAGAACTTTGTTGAATGTTTCAAAGAGGACTGCCTTGGGTTGAGATACCCCCTTTCAAAAGTTATGTACAAAGTGTGTGGGAAGTACCTGAGCCTGTACCCGGCCGACAGAGACCTGCTGTGGGAGGTGGAGAGTGTTGGAAGACCCAGCCAGAGGACTAACATAGCCAACAAGATCCAGGCTATGGGTCTGAGCTCCTTATCCAAGTACCTCCCCTTTACGGAGCACTCTGTGGCGAACCGTGTGGGGGCTGAAAATGAGGGTGTAATGGAGAAAGTGACATCACGCATACAGGAAGCAATGGAGTATACTGTTGAAATTGTGGAGGACGTTACACTGGTCAAAGTGACAAAAGAGAAGGAAGAAACGCCGGTTACAACCAGAGGCAGGAGCAGTGGCCAGAAATTCAAGAATATCTCGGAGGAAAGCAAATCAGAGAAAGTCATCAGGATTGAGGATATTGAAGCAGAGGTGGATACCCCAAAAGAGAATCCAGTTTCAGAGCATCAGCAAGAGAATGAAAAAGTTGTTGCTGTAGCTGAATGCGACGAAGAGGAGTTAGCTGAGGATGTCGTTGACATAGCCACagaggaggttgaggaggagacggaggaggTTCCAAAGGAGGTGGCAGGAACCAATGAAGACAAAGAAGAGAACAAAGAAGAAACAGCCGAAGAATCCTCGAAGGAGGGGAAAAAAAGAAGAGGCAGACCAAGATCCACTCGTCTCACGAAACCTGTtgaggctgaggaggagagagtggaagaggagcAGCCAGTAGTTGAGGAACCTGCTGAGGAAGAGGAGAATATCTCACCagctgaggaggaagaggcagcTCCAGTGGTAGAAACAAGAGTCttgaggagaggaagaaaaagcGTTCCACCTACCCTAACACCAAAATGCAAGTCCACAAGAAGAGGCAAACTGCCTGAGGAAGAGAAGGCGGAAGAGCCAGAGGAGAAAGAGGCAGCTGAGGAAGAAGAGGCACCAGTAGTGGAAGCAATAACTGAGGAAGAGGAAAAattggaggaagagaagaaagaggtggaagcagaagaagaagaagaaacggTAGAAAAACTAGCAGAGGTAGTTGAAGAGGCAGAAAAAGTGGAGTGGGAGGCAACAGCAGTGGATAATGTAGCAGATGAACCAGTAGAAAAACCAgttgaagaagaagagaagacCATACcacctgaggaggaagaggaggctccAGTTGTAGAAACAAGAGTCCTGAGAAGAGGAAGAAAAAGAGTTCTAGTTACTACACCAAAATGCAAGGCCACACGAAAAGGCAAACAACCTGTGAAAGTGGAGGCGCCAGATGAAGAGTCAGCTGAGGAAGAAGAGGCACCAGTAGTAGAAGCCAGAGTTTTGAAGAAAGGAAGAAAAtctacccctgccaaacccagATGCAAATCCAAACGACGCCACAAACAACccgaggaagaggtagaggaagTGGCTGAACCTGTGTTGGATTCTGTGGAtaaaatggtagagagagaaaaagaagtgGAGGAAACAGCAGCAATAGAGAAGGGAGAAAAAGTGGAGCAAGATAAACCAGTGGAGAAGGAAATGGCAGAGGAGGAGGTAGCTGTAATAGTGGAAGAAGAAAtggtggaggaagaagaggaaactGAAACTGCACcagtgggagaggagagtgtTGCAGAAGAAAAGGTGGAGGAGGAAGCAACAACTGGGGAAGAGGAAAATGTGGAGGAAGCGAAGGAGAAAACCGAAGCTGAACCTGAATCAACGGAAGAGGAGAGTGCTGCAGAAGAAAAGGTGAAGGAGGTAGCAACAACTGAGGAAGAGGAAaatatggaggaagagagggaagcgGAGATAGTGGAGGAAGAACAAATAGAGGAAGCTGAAGCTGCAGTTTCAGTTGAAACTCTTACTGTGGAAGaaaaggtggaggaggaagaaaaAACCATAGAGGAGGAAAAGGTGGAGGAAGCAACAACTGAGGAAGAGGTAAAAGTGGACGAAGAGAAGAAAGAGGAAACAGTTATAGAAAAACTAGCAGAGGAAGTTGCTATGGTAGAAGAGGCAGAAAACgtggaggagaaagaagaggctAGAGAAGTGGAATTTGTTGCAAATGAAGTGGTAGAAAATCCAGTTGAAGAAAAGAACACCTCACCATCTGAGGAAGAGGAGAACACCTCACCACCTGAGGAAGATGCTCCAGTTGTAGAAACAAGAGTCCTTGGAAGAGGAATAAAAAGGGTGGAGGTAAAGGAGAAAGAGGAAGCTGCTGCTGAAGCTACAACTGTGGAAGAAGAGAATGTTGCAGAGGAAAGGGTGGAGTATGAAGCAGCTATAATAGAGGAAGAAGATAttgtggaggaagagaaggagtcAGCAGATGAAGAAAATATTGAGGAAGCTACAGCTGTGGAAGAAAGAGTGGAGGAAGCAAAACACGCAGAGAAAGAAAATGTGGAAGAAGCAATAACTGAGGAAGAGGAAAaagtagaggaagagaagaaagagGCAGAAAAAGAAATGGGAGAAAAACTAGCAGAGGTAATTGAAGAGGCAGAAAAAATGGAGAGGGAGGCAACAGCAGTGGAGAATGTAGCAGGTGAAGCAGTAGAAAAGCTAGTTGAGGAAGAAGAAAGAACCACAGCAcctcaggaggaagaggagacccCAGTTGTAGAAACAAGAGTCCTGAGAAGAGGAAGAAAAAGTGTTCCAGTTACTCCACCAAAACGCAAGTCCACACGAAAAGGCAAACCACCCGAGGAAAATGAGAAAGTGGAGGCACCAGATGAGGAAGAGGCAGCTGAGGAAGAAGAGGCAACAGTAGTGGAAGCCAGAGTTTTGAGGAAAGGAAGAGAATCGGCCCCTGCCAAACCCAGATGCATATCCAAACAAGGCAGCAAACAACCtgaagaagaggtggaggaggaaaagGTAGAGGAGGTTGCTGAACCTATGCTGGATTATGTAaagaaaagggaggagagagaaaaagtagTGGAGGAAACAGCAGCAATAGAGCAGGAAGAAAAAGTGGAGCAAGAAAAACCAGTGGAGAAGGAAATGGCAGAGGAAGCAACTGAAATAATGGAAGACGAAATGGtggatgaagaggaagaggaaactGAATTTGCAGCTGAACCTGAATCAGTGAAAGAGGATAGTGTTGCAGAAGAAAAGGGGGAGGTAGCAACAACCGAGGAAACAAGCGTGGAAGAGGAAAAGATGAAGGAAGAGAAAGAAACTGAGATAGTGGAAGAGGAAAAAATTGAGGAAACTGAAGCTGCAGTTGCAGCTGAAACTATTACTGTGGAAGAAAAGGTGGAAGAGGAAGCAAAAAACATAGAGGAAGAAAAGGTGGATGAAGCAACAACTGAAGAGGAAAAAGTGGATGAAGAGAAGAAAGAGGAAACAGTTATTGAAATAGCTATAGAAAAACTAGCAGAGGAAGTTGCTATGATTGAAGAGGCAGAAAAAgcggaggagaaagaagaggcaAGAGTAGTGGAATGTGTTGCAGATGAAGTGGTAGAAAAGCCATttgaggaagagaagaagacgTCACCaccagaggagaaggaggaagcgGAGCCTCCAGTTGTAGAAACAAGAGTCctgaggagaggaagaaaaagtGTTCATGCTACTCCGACTCCAAAACGCAAGTCCACACGAAGAGGCAAACAACCCGATGAAGTAGAAAAGGAGGATGAGCCAGAAGAGGAAAATGCATATAAAGAAGAGCCACCAGTAGTGGAAGCCAGAGTTCAGAGTAGAGAAAGGAAATCTGCCCCGACACCCAGACACAAATCCAAACGAGCCCGCAAAGAACCTGGGGAGGAAGAAAAGGTAGAAGAGGCAGCTGAACCTGTGCCTGAAGCTGTAGAGGAAAAGGTGGAGGAAGAAAAATCAGTGGAGGAGGAAAAGGTAAATGAAGCTGCAGCTGAAACTGCTACTGTGGAAGAAAAGGTTGAGGAGGCAGAAGCGATAGAGGAAGAACATGTGGAGGAAGCAACAACTGAGGAAGAGcacaaggtagaggaggagaaggaagcagaAGCTGCACCTGAAACTGCACCAGTGGAAAACGAGACAATGGCAAAAGAAAAGATTGAGGAGGAAATTAAATCTGTAGAGGAAGAAAAGGTTGAAGCAACTGTTGAGGAAGAAGAAACAGTGGAAGAAGCAACAACTGAGGTGACTGTGGTAGAAGAGGCAGAAAAAGTGGAGGGGGCAACAGAGGTGGAAAGTGTAGCAGAGGAAGTAGTGGAAAAGCCGgttgaggaagaggagaaagccTTACCACCCGAGGAAGAAGAGggtaaagttgtagaaacaagattcccgaggagaggaagaaaaagcATTTCTGTTACTCCTCCAAAACGCAAGTCCACACGAAGAGGCAAAGAAGccgaggaagaggagaaggagaagacagGAAAGGTTGAGGAGATGGATGAATTTGTGCAGGAAGCTGTGGAGGAAaacgtggaggaggaggaagaagaggcacTAGTATTAGGAGCCAACATTCTGAGGAGAGGAAGAAAatctgctcctgccacacccAGATGCAACTCCAAACAAGCTTGCAAAGAACCTGAGGAAGAGGAAGTAAAGGTGGGGGCTGAAAAGATGGAGGAGGCAGCTGAACCTGTGCCAGAAGCTGTGGAGGAAGGAAAAACAGTGGAGGAGGAAATGGTGGAACAGAATAAGATGGAGGCAGATGTTGCGATGGTAGAGGACAAAGGAAACACTGAAGTACAAGCAGACAGTGGTGCTCCTGAGGAAAAAGAAGAAGCAATCACACATCTGCCAGAGGAGGTTATGGCAGAGCAAACCAaggagaaggaagaagaggagaacacAGAGGAGAAAACTACAGAAACATCAAAAGAGGCAGCTGAAGTAGAAACAGCTGAAGCGGTAGATGAGGTGGAAGAAGAGGTTGATAAGGTAATGGCAGAAGAGGCAAGCGTAGTAGAAGAGGAAGTGGCCTCAGTGGCTGAGGGTGCTGTCAAGCCTGAGGAAAATGGaacagagaaggagaagaaggaagaagaaacTATTGAGGAGAATGGCATGGAAAATGTAGAGAGCGGTGAGACAGAGGCAGAGGATGGAGTCGGGGTCAAGGTGGACAACCTTAATTTACAGTTGGCAGAGgacgatgaggaggaggagaaagaggagggggagaagatggCGGTAGAGGAAAAGAGAGCTGCTCCAACTCAGAAGGAAGAGCTGAAGAGctctgaggaagaggaggctcCAGTGGTTTTAACGAGAGTTCTGAGAGTGAGGTTAACTGCCACACCCACAACCACACCCAACTCCAAGGCCACGCCCCAGCGTAAATCCACAAGACACAGCAAAATAGTAACACCTGAGAAGTTTGATCCTGAGGGGGTCCTGCTTTCATCAGATCAAGAGCAGGAAGAAAGCCTTGTGGAAATGAGACATCTACGTAAGAGAAAAAGCACAGGGCCAACACCTGTTCACAGATCCAAGTGCCACAGCAGAACTTAGGCTGTGAAGACAGGTGTTTTTGTTCTCCTCTTTAAATATACAGCTATAGAGGAAAGATTTCACATGGGACCAGATAATTTCCTTGTATCTATTtgtcagaagaagaaaaaaatggaaaaaatgcTTCCTGTTTTTTGGTAATTTTCCGAGTCGATATGCTGCATATTTAATACCTTTTTATATTGTACGTACATTTAGCATTTTAAGTACAAATCTGTTTACTATTTTTTCAAATTGCAGCTGTCATTTTGACCTTAGTGGCAGGTAACTCAATGTGTTTCAGTAGGCTGGGAGGCTTTGGTTTTCTGATAAATGTATAGTATTTTTAGGTCGAACAGTTTTTAACTGTTTCTGTTGCAGTTTCTAACCGCACAAATTATTCTATACAATTTTTTTGTAATCACAATTTAAACATGATCTTCTAAGATAGCATTTATTCTCTCAAAATACTACAGGGTGTATTTCAGCATACCATAATTCCAAACGGTGTCCCCTCAAGTATAACTCAACAActctataaataaataaatatattttttacgtaTGAATTTAGTTACACTTATTGTCAATAAGAGACATctgattttgttagtcagtctcactcagatataaTATTAAAacctgcaaacatttctctccaccctatggaaaaatgtgtataattgcaggaaataGTTATAAAAATGCTCAATATTTTATCTGTCGAATTGCAAAatctgtagaattgcagcaaacttgttttaaaactgcaacattttctctacacccgtggcaaaatgtgtagaattgctctAAATTAACTGTATTACGTATGCACAAATGGGTACGCAGACCCATGAGCAACTGCGGCACCTTATtagttcagattttttgtggccccctCCCTCATCAAAGTTACCCATCTCTGATATAAATGCTATTACATTAAATGTGTAATATGTTCTTAAATGTGTAATATGACACAAATatgatgatttgtttttcaaaagtgtAAAATATTTCCTATTTTATTAAGGGAATAATGCATTAAGCAAGTTTTAGTTTTATTTTACAGCACATTTGAGTGACATTTCTCTTTGACATTTTTTATGGTTTCATTTTTACCCAATTACAAATGTTTTCAGCGGAACTGTCACGCTCTGACCAAAGTAAGCTGTTTTTCTCagtgttggttggggcgtgatagtgactagggtgggtcatctaggtgtttGTATGTCTATTTTGGCCTGATATggaacccaataagagacagctgtttatcgttgtctctgattggggaccatatttaggtagccatttccccattgttggttgtgggatcttgactatgtgtagttgcctgtcagcactattGTATA

Function

NR:

description
axoneme-associated protein mst101(2)-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606649.2 True 7643 mRNA 0.45 12 46542604 46567635

Neighbor

gene id symbol gene type direction distance location
LOC110526048 sec14l2 coding upstream 27848 46471484 ~ 46514756 (+)
ascc2 ascc2 coding upstream 80647 46445956 ~ 46461957 (+)
LOC110526905 LOC106584888 coding upstream 279506 46199519 ~ 46263098 (+)
LOC110526042 LOC106584891 coding upstream 352312 46076084 ~ 46190292 (+)
LOC110526904 NA coding upstream 570591 45968464 ~ 45972013 (+)
msh3 LOC106584876 coding downstream 7300 46574935 ~ 46708962 (+)
rasgrf2b rasgrf2 coding downstream 155325 46722960 ~ 46900004 (+)
LOC118964876 NA coding downstream 363449 46931084 ~ 46935277 (+)
LOC110526054 NA coding downstream 389867 46935543 ~ 46978128 (+)
LOC110526907 NA coding downstream 425961 46993596 ~ 47004352 (+)
G513523 NA non-coding upstream 26445 46491404 ~ 46516159 (+)
G513502 NA non-coding upstream 174749 46367652 ~ 46367855 (+)
G513427 NA non-coding upstream 275071 46263122 ~ 46267533 (+)
G513380 NA non-coding upstream 346596 46195776 ~ 46196008 (+)
G513379 NA non-coding upstream 347165 46195238 ~ 46195439 (+)
G513619 NA non-coding downstream 79333 46646968 ~ 46697374 (+)
G513746 NA non-coding downstream 333915 46901550 ~ 46903598 (+)
G513748 NA non-coding downstream 338054 46905689 ~ 46905904 (+)
G513749 NA non-coding downstream 338886 46906521 ~ 46906796 (+)
G514426 NA non-coding downstream 339479 46907114 ~ 46907423 (+)
G513501 NA other upstream 182019 46359956 ~ 46360585 (+)
G512912 NA other upstream 906354 45635589 ~ 45636250 (+)
LOC110526028 ccdc60 other upstream 1321822 45187119 ~ 45236944 (+)
G512192 LOC106584908 other upstream 1356735 45184439 ~ 45185869 (+)
G513745 NA other downstream 332926 46900561 ~ 46901123 (+)
G514464 NA other downstream 359207 46926842 ~ 46927714 (+)
G514499 NA other downstream 454659 47022294 ~ 47023092 (+)
G514662 LOC106597055 other downstream 735548 47303183 ~ 47329244 (+)
G514665 NA other downstream 738803 47306438 ~ 47320050 (+)

Expression


Co-expression Network