LOC110526907


Basic Information

Item Value
gene id LOC110526907
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 46993596 ~ 47004352 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980263.1
TGGACGGTTCTTCAGAAACGGCTCGtcaaccacctcggtagcttgtTAGCCAACATAGCCGAAAGATTCAAGCTATTTATACGCTTTCGGTGTATATTAGCTACTGTGTTTTAGACACACTTCTGTCTTATCTTCTTGTTAACCTATTTAATATAATATTACGTTATTTTTTATTAGTCAGctatagtagctagctggttAAGTTAGCACTAGTCTAGTCGCTAAtgatatctagctagctaacatcccagAACATGAGCTCCCTAAGTTACTCCCCTCCTgttaaagaagaggaggtctgctggacaGAGAAAGAAGATCTggggctgaacattgtcgtgaaagaggagaaggaagaggaggatgtcacagtaaaacaagaagtagagggtgaggctgttacagtgaaagaagaagagaaagacgtttttGGAATGAAGGATGAAGAGGGGGAGATCACTGTCACATTAGAGGAGGACGAAGAAGAGAAGACTGGAGaactgattaacaccagtaaatacagagagagacgtgactattgtggatcctctggggatcatcaacaacatcatgatGCTGATGAGGCAGaaaagagtctctccagatcagaactcctcaagaaacaccagcgagtacacacaggagagaaatctatctgctgctctgactgtgggaaaagaTTCAGCTCTTCAGTCGACCTTAAAATACATCAAagaattcacactggagagaaaccttatggctgtgatcagtgtgggaagagttttactacatctacCCATCTGACTTtgcatcagagaacacacacaggagagaagtcatatagctgtaatcaatgtgggaagagattttctAAATCAAGCCATCTAACTATACActatagaacacacacaggagagaaaccctatggctgtgatcagtgtgggaagagtttttatACATATAGCAAGCTGActttacaccagagaacacatacaggagagaaatcttatagctgtaatcaatgtgggaagagtttttctACATCTAGCTATCTAACTATACACcataggacacacacaggagagaaatcctatggctgtgctcaatgtgggaagagtttttatACATCTAGCAAGCTGACTTCACaccaaagaacacacacaggagagaaaccatatagctgtagtcaatgtgggaagagtttttctACATCTAGCCAGCTGACTGTACaccaaagaacacacacaggggagaaatctcaaagctgtgatcaatgtgggaagagatacaCTGATAAAAGATATCTgattaaacatcagaaaatacatggggttgtttcatgatatcaatgtCAAAATGTTTTTACATTGTAGGAGTATTTGATTGAATATCAGAATGTAGAACCCTAAATGTTTACCTCTTGTTCAATTGATCTTAGCCTCAGTGGAAAGatccaggctctgaattgaaagagTTACTATTTATGTGATTTATCAAACATTTACTAACAAAAAAAAGAGTTGTGTTCCACTTACCAAGTGGTTACCCACTTCAATCAAAATATAACACCTCAAAATGTGTTTTCTACAAAGGgatgtacacattattcccagattccatgtggtttttgagctgttagttttaacagaACGTGCAACCTCATCTCCCTGCTCTCACAcaattgatttcaacatgatattGATGAGTGATGACAAATAAGTGCATTGTATGTTTCCTTTGTTTGGCGACCCCTAAATTTAAATGCACCACTGTTGCTCTGCTTTTAGAATATCAGGGTTCATTCTTAGATGTGCCAACCCAAATGTACTAGAGCATGACATTTGGGGAGTGGGCCCCGATCCAAcaacatgtctatctagtgaacCCTGAAAAGAAAGAGAAGCTCTGCAGTGAGTTGGAAAGTTACTACAGATATTGCAGGAGTTTCCTCTTGAAATCAGACAAGTCTGTGGTAAGGACAACTTGGTTGCTGGTTGTCTCAAGGGTGGACAGTCAAAAAGATGTGTTTTGCATTTAACCAGTGTGTTACCATGgatcacaatttattttgacATGTTTTTCCTTATTGGAGATGAGTTTCTATCTCattcttttctgtatttttttgaaactgcactgttggttcggggctcgtaagtaagcatttcactgtaaggtctacacatgtatTCAGCTAATACGTGactaatacgatttgatttgagtttTAGGATTTaggaaaaggagaaaaaaaatgtgattgtatattattatttagAAGTAGGtgctttttcttgtttttaattgttgacagccagtagacacCATGTTTATATTGTAGAAGGTGAAGTGTAGTTGATTATAAtgtgaaatggaagttgtttTTTAGTCAGTTGTTCAGCTGAAATGTGTCTTCGGCACACAGATTGGTGTCACcccgttagtcagtatgtgttacacctgtgctgccttgtccatctcgttagtggaaaggtgtttcacctgagctggtccaggttctatttaagagtgtctggcccagtgctccagttgtcttgatagatgtggagagtcaacacctttagttgcgCTACCTTTTTGGTTTTCTTCCTGTCTAAGTTAGGtttgggtttttcttttgtttgcctcttcttgggcagatttagtgggtctcatggtgggtgtcttttaggtcccagttgttgttactagtcGCCTTTCAGTGGAAACCCCCATAGTGTCTTTCAGAGCCCCTCCtaaaaaacaagcttatattttggggttTGATATTGCGTCCAATTTATATTTTAATCAATGGCATTTCCTAAGAATGCTCATTAGTCTTTCAGTTATTATTGTTTGTGGACTAAATCTTTTTTATTTTCATAGTTTTTTCCTGTGAATCCGTTGtgttgtataaataaagcttgatttgaaca
>XM_036980264.1
TGGACGGTTCTTCAGAAACGGCTCGtcaaccacctcggtagcttgtTAGCCAACATAGCCGAAAGATTCAAGCTATTTATACGCTTTCGGTGTATATTAGCTACTGTGTTTTAGACACACTTCTGTCTTATCTTCTTGTTAACCTATTTAATATAATATTACGTTATTTTTTATTAGTCAGctatagtagctagctggttAAGTTAGCACTAGTCTAGTCGCTAAtgatatctagctagctaacatcccagAACATGAGCTCCCTAAGTTACTCCCCTCCTgttaaagaagaggaggtctgctggacaGAGAAAGAAGATCTggggctgaacattgtcgtgaaagaggagaaggaagaggaggatgtcacagtaaaacaagaagtagagggtgaggctgttacagtgaaagaagaagagaaagacgtttttGGAATGAAGGATGAAGAGGGGGAGATCACTGTCACATTAGAGGAGGACGAAGAAGAGAAGACTGGAGaactgattaacaccagtaaatacagttttctgtcctcagataaagAACGCTATGAAAGCCAGTCTACATATGAAGAGGTCCCAATGAAGAGCAGTAGTTCTCAGTCCTGGGGACTCAAAGAGAGGCACATTGTTGTTTTTGCCTCAGCACtgcacacagctgattcaaatgatcaactcatcatcatcaagcttcaagtggtatttatttattcatttgtgATGCCATCCTTGATATGATCCTGTTATTGTCACATGCTACACATGCACATGTGTGCCCATGCATCTATCAATCCAATGTTATGTTTAGGTAAGGGTGTGATGTCTGTGCAAAAACAAAACAGGCTATTTTAAATCACCCATATTGAAAAAATGTAGAACAATTAGACACCATATaacccacacctacacactcatgtATCAATCTGATTGTTGTAACTGTTTGTTATAACTGATTGTTGTAACTGATTGTATAACTGTGGCTCCTTCCACAATCAAAGAACAGACAAGAGGGCCAaacatggagaatagtaagacacttcattattcattattattaacTATGCTAGATTGTTTGTCCGTtcatgtttttcagcataaagtccTCTGCAGCCACCAGGTGAGGCcacacacagattcctgttggctttaactaccttattttctcaataactgtctgtctccttcacttcacccctctctcctcttctcccgaaatcctctaggttatatcagctgtgtcggtgaacccctcccgcatctgaactggctacatAGAGGGCACCGCATGTTCAGgacaacaggaagtattattaaagagatgctttacattgaaatacagatagagatgcagtagtcccagagttaatgctcccaggtcagtttatattatacaggaagtattattaaagagatgctttacattgaaatacagatagagatgcagtagtcccagagttaatgatccaaggtcagttttgcatttcacctcctaaTTGATGACTAACAAtgttagaataaaaaataaaaacacaaggcttaaacatgctctctctctccatctgtctctcctctgcaggtatgttttgatgtgagaggaaGCCAACCCCCAATCccatcatcgccacctcaccTGCTTTTAAGATGACCTTTGGGCCGACTAGAGACACTtttatgtaattgtgatgaactgagagaatatttatGTAGCACTGTGATTCATTAATCATGTGCTTCCTTCCCTGCTCCTATGtgcttacctctttccctttgtcTTTTACACCTCTTGCACCaactcctctttcttcctctgtttttataATGCACAACAGATGTGCATTGAAGGACAGATTGAACGTGTATTTATAACACTTGGATAATGAGcttttcaataaagcgtttcacattctc
>XR_005052126.1
TGGACGGTTCTTCAGAAACGGCTCGtcaaccacctcggtagcttgtTAGCCAACATAGCCGAAAGATTCAAGCTATTTATACGCTTTCGGTGTATATTAGCTACTGTGTTTTAGACACACTTCTGTCTTATCTTCTTGTTAACCTATTTAATATAATATTACGTTATTTTTTATTAGTCAGctatagtagctagctggttAAGTTAGCACTAGTCTAGTCGCTAAtgatatctagctagctaacatcccagAACATGAGCTCCCTAAGTTACTCCCCTCCTgttaaagaagaggaggtctgctggacaGAGAAAGAAGATCTggggctgaacattgtcgtgaaagaggagaaggaagaggaggatgtcacagtaaaacaagaagtagagggtgaggctgttacagtgaaagaagaagagaaagacgtttttGGAATGAAGGATGAAGAGGGGGAGATCACTGTCACATTAGAGGAGGACGAAGAAGAGAAGACTGGAGaactgattaacaccagtaaatacaGGGACAGCAGAGGAACTTCATCGATTCCACTCCTTCATCAATACCAGCAGTGAACATCTGAAATTCACCCTCACCTTTGATGAGCATGAAACAAACTACACCCCTAAAAAAAGATCCTCCCCATTAGCCAATACAGTCGCATACACAGGATTTGTAGTACACAGAGTGACTATGACAAACAAGACCAATTGTCTGGATGAACGTTTCAGACAGCGGGGTTACCCAGACTGCATGACACAAGGGATCGTTATAAAAATATAGTGgatgaaaaagtacccaattttcatacttgagtaaagaaaacatttaaaatgtcattttaATTTTGTAACTATTAAACAAAAACATAACTGTTTGTACTTATATGGAACCAGATCGTGACTACAAATAAGTTACTAAATCTTTAACCGCACTGTATTGTTACACtggtgagtaaaaactcatgcCTCCGACCCTTTAACTTTttgtctgaaaataaaatatacattGTACTCAACTGCGTCCAGTCAGCAGATGGACTGCCCTATCCAGAATAGCCTCCTCTCTCACTGACAGTTGGGGCTGCTGTCCTTTCACCCTCCtccatggctgttagctagctaccaacaAATGCATTTGGATTTAGttttttacagtggtaaatagaTCAAGATAGCTAATATGAAGTTAGGTAAGGGGTGATATTCAATTCACTTAGCTATCTATCTATACAGTATTTGAAGTTGGCTAGATAGCTCAtttagcagctcatttgagtCAGCCTGCACTGTAGCGAGTTAGCTAATAATACAtcgtttttttatttatattttcaaaatctatttacttacttacttgaataggttctcccagcCATGTGGACAACTGGAAACAGGGCAGTAAAGGTTGTCACCAGAGTGTTTTAGAGGATATTACTATTGATCTATGTACCCATTTaataaccagaccttcatacaaacttgctCTGCTGAATTCTTGACGGAGTCACATCGGGCAGCCTAAGCGGCACCTTTTGTGTAGTTCCTGTCCCTAGAAGTGAGGACGGAGATAATAGTAACATAATATTCAGTGTGGTGTAATTTGACTATAATGAAGTCTGTTTCTTGTgaggttttctgtcctcagataaagAACGCTATGAAAGCCAGTCTACATATGAAGAGGTCCCAATGAAGAGCAGTAGTTCTCAGTCCTGGGGACTCAAAGAGAGGCACATTGTTGTTTTTGCCTCAGCACtgcacacagctgattcaaatgatcaactcatcatcatcaagcttcaagtggtatttatttattcatttgtgATGCCATCCTTGATATGATCCTGTTATTGTCACATGCTACACATGCACATGTGTGCCCATGCATCTATCAATCCAATGTTATGTTTAGGTAAGGGTGTGATGTCTGTGCAAAAACAAAACAGGCTATTTTAAATCACCCATATTGAAAAAATGTAGAACAATTAGACACCATATaacccacacctacacactcatgtATCAATCTGATTGTTGTAACTGTTTGTTATAACTGATTGTTGTAACTGATTGTATAACTGTGGCTCCTTCCACAATCAAAGAACAGACAAGAGGGCCAaacatggagaatagtaagacacttcattattcattattattaacTATGCTAGATTGTTTGTCCGTtcatgtttttcagcataaagtccTCTGCAGCCACCAGGTGAGGCcacacacagattcctgttggctttaactaccttattttctcaataactgtctgtctccttcacttcacccctctctcctcttctcccgaaatcctctaggttatatcagctgtgtcggtgaacccctcccgcatctgaactggctacatAGAGGGCACCGCATGTTCAGgacaacaggaagtattattaaagagatgctttacattgaaatacagatagagatgcagtagtcccagagttaatgctcccaggtcagtttatattatacaggaagtattattaaagagatgctttacattgaaatacagatagagatgcagtagtcccagagttaatgatccaaggtcagttttgcatttcacctcctaaTTGATGACTAACAAtgttagaataaaaaataaaaacacaaggcttaaacatgctctctctctccatctgtctctcctctgcaggtatgttttgatgtgagaggaaGCCAACCCCCAATCccatcatcgccacctcaccTGCTTTTAAGATGACCTTTGGGCCGACTAGAGACACTtttatgtaattgtgatgaactgagagaatatttatGTAGCACTGTGATTCATTAATCATGTGCTTCCTTCCCTGCTCCTATGtgcttacctctttccctttgtcTTTTACACCTCTTGCACCaactcctctttcttcctctgtttttataATGCACAACAGATGTGCATTGAAGGACAGATTGAACGTGTATTTATAACACTTGGATAATGAGcttttcaataaagcgtttcacattctc
>TU583583
AAGGAAACACAGACAAGACAAGTAGGCTCTCAGgtcattatggtcattgtagttttAAAAAATAGCATCTAATTATGCCAATCTGTATGTGGGGTTGTTAGAGAATAATGTGATTGTCAACCCTAACAATCCATTATAGCACATCAGGCTCTGAAAAAGGCTTCATTGATGACGTGTTCCTTCTATTCTAGGGGACAGCAGAGGAACTTCATCGATTCCACTCCTTCATCAATACCAGCAGTGAACATCTGAAATTCACCCTCACCTTTGATGAGCATGAAACAAACTACACCCCTAAAAAAAGATCCTCCCCATTAGCCAATACAGTCGCATACACAGGATTTGTAGTACACAGAGTGACTATGACAAACAAGACCAATTGTCTGGATGAACGTTTCAGACAGCGGGGTTACCCAGACTGCATGACACAAGGGATCGTTATAAAAATATAGTGgatgaaaaagtacccaattttca

Function

NR:

description
zinc finger protein 2 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980263.1 False 2921 mRNA 0.39 2 46993596 46998667
XM_036980264.1 False 1907 mRNA 0.40 2 46993596 47004352
XR_005052126.1 False 3017 mRNA 0.40 2 46993596 47004352
TU583583 True 477 lncRNA 0.40 1 47001667 47002143

Neighbor

gene id symbol gene type direction distance location
LOC110526054 NA coding upstream 15468 46935543 ~ 46978128 (+)
LOC118964876 NA coding upstream 58319 46931084 ~ 46935277 (+)
rasgrf2b rasgrf2 coding upstream 93592 46722960 ~ 46900004 (+)
msh3 LOC106584876 coding upstream 284634 46574935 ~ 46708962 (+)
LOC110526049 LOC106570833 coding upstream 425961 46542604 ~ 46567635 (+)
si:dkey-88e18.2 il12b coding downstream 106460 47110812 ~ 47119011 (+)
LOC110526052 hic2 coding downstream 146548 47150900 ~ 47217434 (+)
LOC118964877 NA coding downstream 391015 47395367 ~ 47398426 (+)
LOC110526909 LOC106585521 coding downstream 416889 47421241 ~ 47424219 (+)
LOC110526910 LOC106585521 coding downstream 446493 47450664 ~ 47494972 (+)
G514459 NA non-coding upstream 20334 46968924 ~ 46973262 (+)
G514465 NA non-coding upstream 60468 46932202 ~ 46933128 (+)
G514460 NA non-coding upstream 63810 46929398 ~ 46929786 (+)
G514449 NA non-coding upstream 73042 46919624 ~ 46920554 (+)
G514486 NA non-coding downstream 954 47005306 ~ 47005664 (+)
G514487 NA non-coding downstream 1489 47005841 ~ 47006197 (+)
G514493 NA non-coding downstream 12258 47016610 ~ 47016813 (+)
G514494 NA non-coding downstream 12635 47016987 ~ 47017236 (+)
G514495 NA non-coding downstream 12958 47017310 ~ 47017547 (+)
G514464 NA other upstream 65882 46926842 ~ 46927714 (+)
G513745 NA other upstream 92473 46900561 ~ 46901123 (+)
G513501 NA other upstream 633011 46359956 ~ 46360585 (+)
LOC110526042 LOC106584891 other upstream 803304 46076084 ~ 46190292 (+)
G512912 NA other upstream 1357346 45635589 ~ 45636250 (+)
G514499 NA other downstream 17942 47022294 ~ 47023092 (+)
G514662 LOC106597055 other downstream 298831 47303183 ~ 47329244 (+)
G514665 NA other downstream 302086 47306438 ~ 47320050 (+)
LOC118964881 LOC106585521 other downstream 509434 47425001 ~ 47519480 (+)
G515069 NA other downstream 945654 47950006 ~ 47952254 (+)
G514453 NA non-coding upstream 3002 46933793 ~ 46998665 (+)

Expression


Co-expression Network