LOC118964877


Basic Information

Item Value
gene id LOC118964877
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 47395367 ~ 47398426 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980267.1
aagagattcacctcctcatcaggcattaaaattcatcagagaatccacacaggagagaaatcttatatcTGTActcaatgtggaaagagttttactacatctagccATCTGAcattacaccagagaacacacacaggagagaaaccttatatctgtgatcaatgtgggaagagtttttctGCATCTAGCTatctgactctacaccagagaacacacacaggagagaaaccctaTATCTGTGATCAATGTGGCAAGAGTTTTGTTCGATCTGACCAGCTGAcattacaccagagaacacacacaggggagagaccttatagctgtggtcaatgtgggaagagttttggtcaatctggagatctgacagtgcaccagagaacacacacaggagagaaatcttatagctgtgatcaatgtggaaagagttttgttaGATCTAGCCTTCTGAcattacaccagagaacacacacaggagagaaaccttatagctgtgatcaatgtggcaATAGTTTTACTACCTCTAACTatctgactctacaccagagaacccacacaggagagaaactttttatctgtgatcaatgtgggaagagttttgttcgaCCTGGCCAGCTGAcattacaccagagaacacacacaggagagaaaccttatagctgtggtcaatgtgggaagagttttggtcaatctggagatctgacagtgcaccagagaacacacacaggagagaaaccttatagctgtgatcaatgtgggaagagatttgccACATCAGGCTctctgactctacaccagagaacacacacaggagagaaaccttataactgtggtcaatgtgggaagagttttgctgcATCGAGCAATCTGACTCTACaccaaagaacacacacaggagagaagccttatagctgtgttcaatgtgggaagagttttggtcaaTCTAGCATTCTGACtcgacaccagagaacacacacaggagagaaatctcatAGCTGATACCAAATATAATCTGATAAAAGATCTCTGCTCAAATATCAGAACATGTATACATGAtggagttgtttcatgatatcaatgaattaatgtcacaatgtagaatgttttaacattgtagttgGAGTATTTTAATAGTGTCACAATTTAGAACCCTAAACGTTTGCCCCCTTATCAATTGATTTCAACATGTTATCGATGAGTGATGACAAATAAGTGTTGCAGTCCTTTGTTTAGCGACCCCTGATTTGAAATGCATCTctccaaaatgtagctgactgtcttctgcaggttgtcctccaACCAGTGAGGTAAaagatatctcccatttccatgtgtttttttagtTGTGTTTGTTTCAACATCAGGTAGAACTGATTCCCCCCTAATCGACATCAGTGATTATTTACTTATCAAAACAACAGCTTTTTTGGTGCTTGTGCAGTTTATAAGGAACTTATACAAGTAATTTGATTATTGTGGCAGATGTTTGTGTATATTGTACAATTTATGTTTAGTTTTTCAATTTATCAcaaactgtttctgcatattggttatttatttatttttatctttatttaactaggcaagtcagttaagaacaaattcttattttcaatgacggcctaatcacatcatatttcaaacattcagcctgacaaaagatacatgttttattattccatGCCTCACCATTAAGTCAATTATTGCCAATACATATTAACAAAGGGATGTACATTTGCTTTTGATATTTCAAATGTACAATTCATGTGACATTTAGTAATCATAATTATTTATGCAACCAACTGACAATTTTTGGGTACAATTATATTGAAATTGTTAGCCTGCTTTTAGAATATCAGGGATCATTCTCAGATGTGCCAACCCTAATGTACTGGAGCATGACATTGGGGACTGGGCCTCGATCCAACAACATGCCTATCGAGATATTGCAGGACTTTGCTCTTGAAatcatacaatttgatttgagttttgTTTGGGAAAGTACTACGGATATTGCAGGAGTTTCCTCTTAAAATCAGACATGTCCGTGATAAGGTTAACTTGGTTGCTGATTGTCTCAAGTGTGGGCAGTCAAAAGGTTTTGTGTTTTTCGTTAGGCAGTCATTGCTATGGATCACGTTTTTCCGTATTGGAGATGAGTTTTGTTTGGGCTCATTCCAAGGGGaggagagttctagaagctagtgagttttaggattctatagaaagaaaaaggagaaaaaaattaTATGATTGTATATTATTGTTTAGAAGTAtgtgttttttcttgtttttaattgttgacagcaagtggttttctgttggtggtgagcAAACTTGACCAACAAAAATTTAGGATATATTTGTTGTCTTTAGGGGGAAggtgttacaggctttggtttttccatttatgttttgatgTTAGACTTTAGCACGTAGGAACGGGGGATACCaagtcagctgtacaactgaatgcattcaactgacaTGTGTCTTCCGTGCACTGATGACTGTCACCTCGttagtatgtgttacacctgtgctggcttgtccatctcgttagtgggaaggtgtttcacctgacctggtccaggttctatttaagagtgtctggcccagtgctccagttgtctgatagatgtggagagtcaacacctttagttCATCCACCTTTAAGTTTGTTGTGGGTTTTTTGTTTGGTTTCCTCTTCTTGGGCAGTTTTAGTGGGTTAGATTTAGTGGTGTCTTTTATttcccagttgttgttactagtcaacttTCAATGTACACCCCCATAGTGCCTTTCAGAACCCCTCTTAAAAAAAACAGCTTTAATTTTGGGTTGGATATTTTCATCAAAGGCATTTCCTTAGGATGCTCATTAGTCTTTAagttgctattattgttttttatcctcttatgtttgtgtactaaatatttctgtttattttaatttgttttttcctgtgaagtcattgtgttgcatccatgtctgacatactgtataaataaagcttgatttgatttgaacatattgCAAAACAAATTAAGCCAATGATTGACC

Function

NR:

description
zinc finger protein 2 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980267.1 True 3060 mRNA 0.38 1 47395367 47398426

Neighbor

gene id symbol gene type direction distance location
LOC110526052 hic2 coding upstream 177933 47150900 ~ 47217434 (+)
si:dkey-88e18.2 il12b coding upstream 276356 47110812 ~ 47119011 (+)
LOC110526907 NA coding upstream 391015 46993596 ~ 47004352 (+)
LOC110526054 NA coding upstream 417239 46935543 ~ 46978128 (+)
LOC118964876 NA coding upstream 460090 46931084 ~ 46935277 (+)
LOC110526909 LOC106585521 coding downstream 22815 47421241 ~ 47424219 (+)
LOC110526910 LOC106585521 coding downstream 52419 47450664 ~ 47494972 (+)
LOC118964881 LOC106585521 coding downstream 115206 47425001 ~ 47519480 (+)
LOC118964880 LOC106585521 coding downstream 140895 47539321 ~ 47543002 (+)
LOC118964879 LOC106585521 coding downstream 272905 47671331 ~ 47675493 (+)
G514685 NA non-coding upstream 42198 47347637 ~ 47353169 (+)
G514684 NA non-coding upstream 42819 47347461 ~ 47352548 (+)
G514675 NA non-coding upstream 56040 47330427 ~ 47339327 (+)
G514656 NA non-coding upstream 100291 47294875 ~ 47295076 (+)
G514632 NA non-coding upstream 110941 47281500 ~ 47284426 (+)
G514709 NA non-coding downstream 23877 47422303 ~ 47422634 (+)
G514718 NA non-coding downstream 38912 47437338 ~ 47437660 (+)
G514732 LOC106585521 non-coding downstream 93062 47491488 ~ 47492043 (+)
G514662 LOC106597055 other upstream 66123 47303183 ~ 47329244 (+)
G514665 NA other upstream 75317 47306438 ~ 47320050 (+)
G514499 NA other upstream 372275 47022294 ~ 47023092 (+)
G514464 NA other upstream 467653 46926842 ~ 46927714 (+)
G513745 NA other upstream 494244 46900561 ~ 46901123 (+)
G515069 NA other downstream 551580 47950006 ~ 47952254 (+)
G515189 LOC100135962 other downstream 1153193 48532377 ~ 48587888 (+)
LOC110526072 LOC106587002 other downstream 1550191 48948617 ~ 49037542 (+)
edf1 edf1 other downstream 1785447 49183291 ~ 49187334 (+)

Expression


Co-expression Network