LOC110526909 (LOC106585521)


Basic Information

Item Value
gene id LOC110526909
gene name LOC106585521
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 47421241 ~ 47424219 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981755.1
ATGGTGGAAGAAAAGGTAGtacagagagatgatgatgatccccagagggaggggagggaggttgcTGAGGAAGAACCAGTGGCCCAGCTCAAGAAGGAGCCCAAGAAGACAGGAAAGATGACAAAGGAACAGCTTGCAAAATTGTGCAAGACCATTGTCAACTTCATTGCACAGACCACCCTGCAGATCCTGCTGCCGGCCCTGGCCCGCATTCTAGGGGTGACAGGCTTTTATGACAACGCTGACTCACTCAAAAGGGGCGGCAGTGCAAGATCCTTCACTGCCTTTGAGCAGAAAAGActggagctcatccaggaagttaAATATTTGGCGAAGGAGATGTGTAACTGTGGCGGCAGGGCTCTCCGACCAAGGTCTAGCACACCCTCTTCcaagagttcccagacctcaCTGAAAGTCCACCTGGGAATGCCAGaggacagtatcatcagcagtgtccaggagcaactgtcaaaatctgaccaaaTGTTGGCTGCAGGACAGCTTTCACAAATAGATAAAATGGTTGGAACTATGCTGGAGAACATTGAGAAGATAAGCAGCGAATGTGGCGAGGAATTGGTCTATCAAGAGTCACTGCGGtcttcctcctcgttgtcatTCTCAACTGCCAAATCACAGAAGACCGAGTGGGAATTTtcactccctggcactcccattcCTTCTGAGTTACCCGAGAGTCCTGCTCAGCCCATTGTAAGATGCTCAGTCATTGACATGAGCGAATCTACTAAGCCaaaaacaatggtgtgtgtgatgCCAGAACAAGCATGTTTGCCATAGCCGATACCATCATGAAGAAGGTATATCCAGAGGCAGAAGGGCAGGTTACATCTCACCCTGATCTAACAGATGCAATAGCTAGACTGGAGGAGCTCATATCTCAGGgtaggattggtgctctctcCCGTGA

Function

NR:

description
uncharacterized protein LOC110526909

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981755.1 True 934 mRNA 0.50 4 47421241 47424219

Neighbor

gene id symbol gene type direction distance location
LOC118964877 NA coding upstream 22815 47395367 ~ 47398426 (+)
LOC110526052 hic2 coding upstream 203807 47150900 ~ 47217434 (+)
si:dkey-88e18.2 il12b coding upstream 302230 47110812 ~ 47119011 (+)
LOC110526907 NA coding upstream 416889 46993596 ~ 47004352 (+)
LOC110526054 NA coding upstream 443113 46935543 ~ 46978128 (+)
LOC110526910 LOC106585521 coding downstream 26626 47450664 ~ 47494972 (+)
LOC118964881 LOC106585521 coding downstream 89413 47425001 ~ 47519480 (+)
LOC118964880 LOC106585521 coding downstream 115102 47539321 ~ 47543002 (+)
LOC118964879 LOC106585521 coding downstream 247112 47671331 ~ 47675493 (+)
LOC118964888 LOC106585521 coding downstream 301412 47725631 ~ 48235995 (+)
G514685 NA non-coding upstream 68072 47347637 ~ 47353169 (+)
G514684 NA non-coding upstream 68693 47347461 ~ 47352548 (+)
G514675 NA non-coding upstream 81914 47330427 ~ 47339327 (+)
G514656 NA non-coding upstream 126165 47294875 ~ 47295076 (+)
G514632 NA non-coding upstream 136815 47281500 ~ 47284426 (+)
G514718 NA non-coding downstream 13119 47437338 ~ 47437660 (+)
G514732 LOC106585521 non-coding downstream 67269 47491488 ~ 47492043 (+)
G515037 NA non-coding downstream 119128 47543347 ~ 47543994 (+)
G514662 LOC106597055 other upstream 91997 47303183 ~ 47329244 (+)
G514665 NA other upstream 101191 47306438 ~ 47320050 (+)
G514499 NA other upstream 398149 47022294 ~ 47023092 (+)
G514464 NA other upstream 493527 46926842 ~ 46927714 (+)
G513745 NA other upstream 520118 46900561 ~ 46901123 (+)
G515069 NA other downstream 525787 47950006 ~ 47952254 (+)
G515189 LOC100135962 other downstream 1127400 48532377 ~ 48587888 (+)
LOC110526072 LOC106587002 other downstream 1524398 48948617 ~ 49037542 (+)
edf1 edf1 other downstream 1759654 49183291 ~ 49187334 (+)

Expression


Co-expression Network