LOC118964881 (LOC106585521)


Basic Information

Item Value
gene id LOC118964881
gene name LOC106585521
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 47425001 ~ 47519480 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980284.1
TGGAAACTGGTCAGTGAACCGTCCTCAAACACAATGAACTGATGTCAATATGGACATGAACCTTCACATAAAGATATCAAATACATGACGTCAGATATAtcgacagtccagcaggcatcagctttGTAGCCAAGTGATAATAGTGTCCAgaaggcagcagtagatggaacagggaaggcGCCATTACGCTAGCACGCGGGCTAcacggcgtttaaagttagtagccctccgacggaggccggttgaaggcacagcggatggagtattcgtcggcagaccagtcgtggtggtgcggcggggggccttgtcgacagagaatccaagccagatggcgaaagaggtattgtagaatttagaATGCTAgcagggagatgcgcctggctcacggctaactggtgctaccTTCTTGGCAGTGGCGTTATCCACTATAGAtccactatagccaatcggtagcagcgatgaaccggtgccaaggtccagagtttgcAGCAAGGATcagGTAGtacagagagatgatgatgatccccagagggaggggagggaggttgtTGAGGAAGAACCAGTGGCCCAGCTCAAGAAGGAGCCCAAGAAGACAGGAAAGGCAATGGCAAGTGATCTATAAAGGATTTTAAAAAACCTATGACAAAGGAACAGCTTGCAAAATTGTGCAAGACCATTGTCAACTTCATTGCACAGACCACCCTGCAGATCCTGCTGCCGGCCCTGGCCCGCATTCTATGGGTGACGGGCTTTTATGACAACGCTGACACACTCGAGGGGTGGATCCTTCACTGCCTTTGAGCAGAAAAGActggagctcatccaggaagttaAATATTTGGCGAAGTAACTGTGGCGGCAGGGTTCTCCGACCAAGGTCTAGCACACCCTCTTCcaagaggtactgtatgttccccataatgtgtgtgtgtgtgcagttaatCCTAACCCTCAAACTGATGAACAATAATTTCCCCATTTCAATATTTTCCAGCTTTCTAACAGGTGTGTTTTGCAATATCTAATGCACACatataaattacatttagaatacTCAATTATAATGCTTGTTAGATTTGTTAGCACTAAGATATCGATTTTCCAACTTCAGACAGCAATTAACATGCTttgcttgttcattttaaagttcccagacctcaCTGAAAGTCCACCTGGGAATGCCAGaggacagtatcatcagcagtgtccaggagcaactgtcaaaatctgaccaaaTGGTGGCTGCAGGACAGCTTTCACAAATAGATAAAGTGGTTGGAACTATGCTGGAGAACATTGAGAAGATAAGCAGCGAATGTGGCGAGGAATTGGTCTATCAAGAGTCACTGCGGtcttcctcctcgttgtcatTCTCAACTGCCAAATCACAGAAGACAGAGTGGGAATTTGCACTCCCATTCCTTCTGAGTTACCCGAGAGTACTGCTCAGCCCATTGTAAGATGCTCAGTCATTGACATGAGCGAATCTACTAAGCCAAAAACAATGGTGTGTGATGCCAGAACAAGCATGTTTGCCATAGCCGATACCATCATGAAGAAGGTATATCCAGAGGCAGAAGGGCAGGTTACATCTCACCCTGATCTAACAGATCCAATAGCTAGACTGGAGGAGCTCATATCTCAGGgtaggattggtgctctctcCCGTGATCTCAGTCACCAAGTCAACCGCATAATTTCCGATagcaacttgacccctctgggactgacagtggcggctggaaagagtgcatctgataccatcctttcgaagctgaagaggaatgacaaggTGGGGAAGCCCACAACTTACGAGCTGGTTCAGCTGTTTGTAGAGGAGTCTGTTAAGTGCCTCCTGCTTCCTAGTTTTGTGCCCTATTCAActtcaatgagtttggctcagggGGCCAAGGTGTTGGCTAGAGTGTCTGAAGATAGAATTTcatgctcttcttcttcttcatcagtaTTTAGTGACAGTCAGTCTCTTTACCAAAGTTATGGTAAGCCAGGTCATGTACTCTGTGGATTCTGATGCAGAAAGTAGAGGATCCTCTCCAACTGAATCTCTCCAAACATCTGAACCCACTATATCTGATGTAGGCAATCTATTGAGTGGCAAGTCCTCCCCTCGGCTGTCTCCTTCTGGCACCATTATGGCAACAAGCGAGACCTCCAATGCAGCACAAATCTTGAAGGCCAACATTGATGGAGAGGAAGTGGATACCACCAGTCATTCTGGTGTAGCTCAAAACATTGTCAGGGACGATATGTCAACCAGCCCAGACATGGTCAAAGATGTCACACTTCCAACCCCATCCTCTGATAACTTGGGCAGTGATGATGACGTCACCTgcctcatcagcatgttagtAATGAGAATTCTAACAGAAATCCAAACCCCAGCAGAAGATTACCCAGTTGACGTCACACGCAAGTCACAAGACCTGATCCCTAAAGTTATGGAGGTcttctgtgcatggtcaggctgctctgagacaCAAGCCTATCCAGAGAACTTGAGGATTCATAAAGTCTACAGAGTCGTCTATAAAAATCTGTTGGAGGAGTTTGGCTCGGAGAAAATCCTCCAACAggccgtgtcgactcaggactcTTCATTTGATAGGATTCTTGTCAAGTCTTTGAGTGAAGCGCTTCTCCACAGATGTAATGAGGCAGTGAGGGCAGCCTCAAGAACATCAGTCAAAACCACCGGGCCTAAGGCTCTTCCACTGGCTGAGGATGTGAGGGCTAGCAGCGGGAAACTATCTTTTCTACAAAGGCTGGTCAGGCTGACAAGCAACTTAAAGCTATTCAAGAAGGGGAACAAGAAGGATTcccacctctctgaatcagaacaAGTACGGACCACTGCTGAATATGGCATGCtGCCCAGCATAGTGCCACATGCTGCCATGTCTGCACTGCCAAACGATCTCCCCGCCAGCTCCCGACAGGAGACGCCTCACAAACGTCCACTTCTCGTCAGGATGTTTTCTGCCATTTCCAAAGGCCTGTTCAAGCCCTTCAAACAGTCCTTAAAGACCAAGTAACTTCAGACAATTTATTAAACGTCATTCATTGC
>XM_036980285.1
TGGAAACTGGTCAGTGAACCGTCCTCAAACACAATGAACTGATGTCAATATGGACATGAACCTTCACATAAAGATATCAAATACATGACGTCAGATATAtcgacagtccagcaggcatcagctttGTAGCCAAGTGATAATAGTGTCCAgaaggcagcagtagatggaacagggaaggcGCCATTACGCTAGCACGCGGGCTAcacggcgtttaaagttagtagccctccgacggaggccggttgaaggcacagcggatggagtattcgtcggcagaccagtcgtggtggtgcggcggggggccttgtcgacagagaatccaagccagatggcgaaagagGTAGtacagagagatgatgatgatccccagagggaggggagggaggttgtTGAGGAAGAACCAGTGGCCCAGCTCAAGAAGGAGCCCAAGAAGACAGGAAAGATGACAAAGGAACAGCTTGCAAAATTGTGCAAGACCATTGTCAACTTCATTGCACAGACCACCCTGCAGATCCTGCTGCCGGCCCTGGCCCGCATTCTATGGGTGACGGGCTTTTATGACAACGCTGACACACTCGAGGGGTGGATCCTTCACTGCCTTTGAGCAGAAAAGActggagctcatccaggaagttaAATATTTGGCGAAGTAACTGTGGCGGCAGGGTTCTCCGACCAAGGTCTAGCACACCCTCTTCcaagaggtactgtatgttccccataatgtgtgtgtgtgtgcagttaatCCTAACCCTCAAACTGATGAACAATAATTTCCCCATTTCAATATTTTCCAGCTTTCTAACAGGTGTGTTTTGCAATATCTAATGCACACatataaattacatttagaatacTCAATTATAATGCTTGTTAGATTTGTTAGCACTAAGATATCGATTTTCCAACTTCAGACAGCAATTAACATGCTttgcttgttcattttaaagttcccagacctcaCTGAAAGTCCACCTGGGAATGCCAGaggacagtatcatcagcagtgtccaggagcaactgtcaaaatctgaccaaaTGGTGGCTGCAGGACAGCTTTCACAAATAGATAAAGTGGTTGGAACTATGCTGGAGAACATTGAGAAGATAAGCAGCGAATGTGGCGAGGAATTGGTCTATCAAGAGTCACTGCGGtcttcctcctcgttgtcatTCTCAACTGCCAAATCACAGAAGACAGAGTGGGAATTTGCACTCCCATTCCTTCTGAGTTACCCGAGAGTACTGCTCAGCCCATTGTAAGATGCTCAGTCATTGACATGAGCGAATCTACTAAGCCAAAAACAATGGTGTGTGATGCCAGAACAAGCATGTTTGCCATAGCCGATACCATCATGAAGAAGGTATATCCAGAGGCAGAAGGGCAGGTTACATCTCACCCTGATCTAACAGATCCAATAGCTAGACTGGAGGAGCTCATATCTCAGGgtaggattggtgctctctcCCGTGATCTCAGTCACCAAGTCAACCGCATAATTTCCGATagcaacttgacccctctgggactgacagtggcggctggaaagagtgcatctgataccatcctttcgaagctgaagaggaatgacaaggTGGGGAAGCCCACAACTTACGAGCTGGTTCAGCTGTTTGTAGAGGAGTCTGTTAAGTGCCTCCTGCTTCCTAGTTTTGTGCCCTATTCAActtcaatgagtttggctcagggGGCCAAGGTGTTGGCTAGAGTGTCTGAAGATAGAATTTcatgctcttcttcttcttcatcagtaTTTAGTGACAGTCAGTCTCTTTACCAAAGTTATGGTAAGCCAGGTCATGTACTCTGTGGATTCTGATGCAGAAAGTAGAGGATCCTCTCCAACTGAATCTCTCCAAACATCTGAACCCACTATATCTGATGTAGGCAATCTATTGAGTGGCAAGTCCTCCCCTCGGCTGTCTCCTTCTGGCACCATTATGGCAACAAGCGAGACCTCCAATGCAGCACAAATCTTGAAGGCCAACATTGATGGAGAGGAAGTGGATACCACCAGTCATTCTGGTGTAGCTCAAAACATTGTCAGGGACGATATGTCAACCAGCCCAGACATGGTCAAAGATGTCACACTTCCAACCCCATCCTCTGATAACTTGGGCAGTGATGATGACGTCACCTgcctcatcagcatgttagtAATGAGAATTCTAACAGAAATCCAAACCCCAGCAGAAGATTACCCAGTTGACGTCACACGCAAGTCACAAGACCTGATCCCTAAAGTTATGGAGGTcttctgtgcatggtcaggctgctctgagacaCAAGCCTATCCAGAGAACTTGAGGATTCATAAAGTCTACAGAGTCGTCTATAAAAATCTGTTGGAGGAGTTTGGCTCGGAGAAAATCCTCCAACAggccgtgtcgactcaggactcTTCATTTGATAGGATTCTTGTCAAGTCTTTGAGTGAAGCGCTTCTCCACAGATGTAATGAGGCAGTGAGGGCAGCCTCAAGAACATCAGTCAAAACCACCGGGCCTAAGGCTCTTCCACTGGCTGAGGATGTGAGGGCTAGCAGCGGGAAACTATCTTTTCTACAAAGGCTGGTCAGGCTGACAAGCAACTTAAAGCTATTCAAGAAGGGGAACAAGAAGGATTcccacctctctgaatcagaacaAGTACGGACCACTGCTGAATATGGCATGCtGCCCAGCATAGTGCCACATGCTGCCATGTCTGCACTGCCAAACGATCTCCCCGCCAGCTCCCGACAGGAGACGCCTCACAAACGTCCACTTCTCGTCAGGATGTTTTCTGCCATTTCCAAAGGCCTGTTCAAGCCCTTCAAACAGTCCTTAAAGACCAAGTAACTTCAGACAATTTATTAAACGTCATTCATTGC
>XM_036980286.1
TGGAAACTGGTCAGTGAACCGTCCTCAAACACAATGAACTGATGTCAATATGGACATGAACCTTCACATAAAGATATCAAATACATGACGTCAGATATAtcgacagtccagcaggcatcagctttGTAGCCAAGTGATAATAGTGTCCAgaaggcagcagtagatggaacagggaaggcGCCATTACGCTAGCACGCGGGCTAcacggcgtttaaagttagtagccctccgacggaggccggttgaaggcacagcggatggagtattcgtcggcagaccagtcgtggtggtgcggcggggggccttgtcgacagagaatccaagccagatggcgaaagagGTAGtacagagagatgatgatgatccccagagggaggggagggaggttgtTGAGGAAGAACCAGTGGCCCAGCTCAAGAAGGAGCCCAAGAAGACAGGAAAGGCAATGGCAAGTGATCTATAAAGGATTTTAAAAAACCTATGACAAAGGAACAGCTTGCAAAATTGTGCAAGACCATTGTCAACTTCATTGCACAGACCACCCTGCAGATCCTGCTGCCGGCCCTGGCCCGCATTCTATGGGTGACGGGCTTTTATGACAACGCTGACACACTCGAGGGGTGGATCCTTCACTGCCTTTGAGCAGAAAAGActggagctcatccaggaagttaAATATTTGGCGAAGTAACTGTGGCGGCAGGGTTCTCCGACCAAGGTCTAGCACACCCTCTTCcaagagttcccagacctcaCTGAAAGTCCACCTGGGAATGCCAGaggacagtatcatcagcagtgtccaggagcaactgtcaaaatctgaccaaaTGGTGGCTGCAGGACAGCTTTCACAAATAGATAAAGTGGTTGGAACTATGCTGGAGAACATTGAGAAGATAAGCAGCGAATGTGGCGAGGAATTGGTCTATCAAGAGTCACTGCGGtcttcctcctcgttgtcatTCTCAACTGCCAAATCACAGAAGACAGAGTGGGAATTTGCACTCCCATTCCTTCTGAGTTACCCGAGAGTACTGCTCAGCCCATTGTAAGATGCTCAGTCATTGACATGAGCGAATCTACTAAGCCAAAAACAATGGTGTGTGATGCCAGAACAAGCATGTTTGCCATAGCCGATACCATCATGAAGAAGGTATATCCAGAGGCAGAAGGGCAGGTTACATCTCACCCTGATCTAACAGATCCAATAGCTAGACTGGAGGAGCTCATATCTCAGGgtaggattggtgctctctcCCGTGATCTCAGTCACCAAGTCAACCGCATAATTTCCGATagcaacttgacccctctgggactgacagtggcggctggaaagagtgcatctgataccatcctttcgaagctgaagaggaatgacaaggTGGGGAAGCCCACAACTTACGAGCTGGTTCAGCTGTTTGTAGAGGAGTCTGTTAAGTGCCTCCTGCTTCCTAGTTTTGTGCCCTATTCAActtcaatgagtttggctcagggGGCCAAGGTGTTGGCTAGAGTGTCTGAAGATAGAATTTcatgctcttcttcttcttcatcagtaTTTAGTGACAGTCAGTCTCTTTACCAAAGTTATGGTAAGCCAGGTCATGTACTCTGTGGATTCTGATGCAGAAAGTAGAGGATCCTCTCCAACTGAATCTCTCCAAACATCTGAACCCACTATATCTGATGTAGGCAATCTATTGAGTGGCAAGTCCTCCCCTCGGCTGTCTCCTTCTGGCACCATTATGGCAACAAGCGAGACCTCCAATGCAGCACAAATCTTGAAGGCCAACATTGATGGAGAGGAAGTGGATACCACCAGTCATTCTGGTGTAGCTCAAAACATTGTCAGGGACGATATGTCAACCAGCCCAGACATGGTCAAAGATGTCACACTTCCAACCCCATCCTCTGATAACTTGGGCAGTGATGATGACGTCACCTgcctcatcagcatgttagtAATGAGAATTCTAACAGAAATCCAAACCCCAGCAGAAGATTACCCAGTTGACGTCACACGCAAGTCACAAGACCTGATCCCTAAAGTTATGGAGGTcttctgtgcatggtcaggctgctctgagacaCAAGCCTATCCAGAGAACTTGAGGATTCATAAAGTCTACAGAGTCGTCTATAAAAATCTGTTGGAGGAGTTTGGCTCGGAGAAAATCCTCCAACAggccgtgtcgactcaggactcTTCATTTGATAGGATTCTTGTCAAGTCTTTGAGTGAAGCGCTTCTCCACAGATGTAATGAGGCAGTGAGGGCAGCCTCAAGAACATCAGTCAAAACCACCGGGCCTAAGGCTCTTCCACTGGCTGAGGATGTGAGGGCTAGCAGCGGGAAACTATCTTTTCTACAAAGGCTGGTCAGGCTGACAAGCAACTTAAAGCTATTCAAGAAGGGGAACAAGAAGGATTcccacctctctgaatcagaacaAGTACGGACCACTGCTGAATATGGCATGCtGCCCAGCATAGTGCCACATGCTGCCATGTCTGCACTGCCAAACGATCTCCCCGCCAGCTCCCGACAGGAGACGCCTCACAAACGTCCACTTCTCGTCAGGATGTTTTCTGCCATTTCCAAAGGCCTGTTCAAGCCCTTCAAACAGTCCTTAAAGACCAAGTAACTTCAGACAATTTATTAAACGTCATTCATTGC
>TU583873
GTCAAGTCTTTGAGTGAAGCGCTTCTCCACAGATGTAATGAGGCATTGAGGGCAGCCTCAAGAACATCAGTCAAAACCACCGGGCCTAAGGCTCTTCCACTGGCTGAGGATGTGAGGGCTAGCAGCGAGAAATTATTTTTTCTACAAAGGCTGGTCAGGCTGACAAGCAACTGAAAGCTATTCAAGAAGGGGAACAAGAAGGATTCCCACCGCTCTGAATCAGAACAAGTACAGACCACTGCTGAATATGGCATGCtGCCCAGCATAGTGCCACATGCTGCCATGTCTGCACTGCCAAACGATCTCCCCGCCAGCTCCCGACAGGAGACGCCTCACAAACGTCCACTTCTCGTCAGGATGTTTTCTGCCATTTCCAAAGGCCTGTTCAAGCCCTTCAAACAGTCCTTAAAGACCAAGTAACTTCAGACAATTTATTAAACGTCATTCATTGCATTAAA
>TU583904
cagcagtagatggaacagggaaggcGCCATTACGCTAGCACGCGGGCTAcacggcgtttaaagttagtagccctccgacggaggccggttgaaggcacagcggatggagtattcgtcggcagaccagtcgtggtggtgcggcggggggccttgtcgacagagaatccaagccagatggcgaaagagGTAGtacagagagatgatgatgatccccagagggaggggagggaggttgtTGAGGAAGAACCAGTGGCCCAGCTCAAGAAGGAGCCCAAGAAGACAGGAAAGGCAATGGCAAGTGATCTATAAAGGATTTTAAAAAACCTATGACAAAGGAACAGCTTGCAAAATTGTGCAAGACCATTGTCAACTTCATTGCACAGACCACCCTGCAGATCCTGCTGCCGGCCCTGGCCCGCATTCTATGGGTGACGGGCTTTTATGACAACGCTGACACAC

Function

NR:

description
uncharacterized protein LOC110526080

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980284.1 False 3088 mRNA 0.47 6 47513632 47519474
XM_036980285.1 False 2891 mRNA 0.47 5 47513632 47519474
XM_036980286.1 False 2683 mRNA 0.49 7 47513632 47519474
TU583873 False 458 lncRNA 0.48 3 47425001 47519480
TU583904 True 459 TUCP 0.54 4 47513786 47516710

Neighbor

gene id symbol gene type direction distance location
LOC110526910 LOC106585521 coding upstream 18660 47450664 ~ 47494972 (+)
LOC110526909 LOC106585521 coding upstream 89413 47421241 ~ 47424219 (+)
LOC118964877 NA coding upstream 115206 47395367 ~ 47398426 (+)
LOC110526052 hic2 coding upstream 296198 47150900 ~ 47217434 (+)
si:dkey-88e18.2 il12b coding upstream 394621 47110812 ~ 47119011 (+)
LOC118964880 LOC106585521 coding downstream 19847 47539321 ~ 47543002 (+)
LOC118964879 LOC106585521 coding downstream 151857 47671331 ~ 47675493 (+)
LOC118964888 LOC106585521 coding downstream 206157 47725631 ~ 48235995 (+)
LOC118964889 LOC106585521 coding downstream 434244 47953718 ~ 47955681 (+)
LOC110512140 LOC106585521 coding downstream 478432 47997906 ~ 48003429 (+)
G514732 LOC106585521 non-coding upstream 21589 47491488 ~ 47492043 (+)
G514718 NA non-coding upstream 75972 47437338 ~ 47437660 (+)
G514709 NA non-coding upstream 90998 47422303 ~ 47422634 (+)
G514685 NA non-coding upstream 160463 47347637 ~ 47353169 (+)
G515037 NA non-coding downstream 23873 47543347 ~ 47543994 (+)
G515051 NA non-coding downstream 186037 47705511 ~ 47705885 (+)
G515056 NA non-coding downstream 189681 47709155 ~ 47709359 (+)
G515057 NA non-coding downstream 196564 47716038 ~ 47716868 (+)
G514662 LOC106597055 other upstream 184388 47303183 ~ 47329244 (+)
G514665 NA other upstream 193582 47306438 ~ 47320050 (+)
G514499 NA other upstream 490540 47022294 ~ 47023092 (+)
G514464 NA other upstream 585918 46926842 ~ 46927714 (+)
G513745 NA other upstream 612509 46900561 ~ 46901123 (+)
G515069 NA other downstream 430532 47950006 ~ 47952254 (+)
G515189 LOC100135962 other downstream 1032145 48532377 ~ 48587888 (+)
LOC110526072 LOC106587002 other downstream 1429143 48948617 ~ 49037542 (+)
edf1 edf1 other downstream 1664399 49183291 ~ 49187334 (+)
LOC110526066 LOC106584148 other downstream 1714105 49233579 ~ 49260632 (+)
LOC110526907 NA coding upstream 420649 46993596 ~ 47004352 (+)
G514684 NA non-coding upstream 72453 47347461 ~ 47352548 (+)
G514675 NA non-coding upstream 85674 47330427 ~ 47339327 (+)
G514656 NA non-coding upstream 129925 47294875 ~ 47295076 (+)

Expression


Co-expression Network