LOC118964884 (LOC106585477)


Basic Information

Item Value
gene id LOC118964884
gene name LOC106585477
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 47665814 ~ 47667571 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052131.1
TAGGTCTCACTGGTTTGATCCATGGCCTGAAATCTGACCACTATTGCCGTTTTGTTTAAAATAGGAGCGAATAAGTTGTTTCATAAAGTCACAACCTAGGACTGATATTGACCTCTTATTTATCCACCAGAGCGTGAAATGGGACGATCCCCCGGATGACCAAAATAAAGTCGTGGAGAACATGAAGGATGAAACAGAGACACATGAGACCAACaagaacaggacaggaggcaagGCTAAACGTAAGTCCAGTGGCGGTGCCAAGAAGACTTccgtggaggaggacagcagcattGGTGCAGagtcttctcagacacccgggtgtggtttccgggaaaggggatcta
>TU584240
GAGCAATTACAAATAACTATTCTTGTTTTAAAAGCGTCATTACAACTAGCAACATGACGGTCAGTCACCTCTAAGCAGGACTCAGTAGAAACGctatgtgttggatttgtccatGTCTCGCTAAATTAACCTAGCTACCATAACAGCCGTGGAGAATTTATACTACAGTTTTAAGGGATCTCTCTGAAGGTTTTAGATGATACAGTGGTGCTTCGTACTCTGGATGAAGAACCATACATCTCGGCTTGGCTTCATTGCATTATTATTTGGGGAACGTTGACATGCCATTTGTGTTGACGGATggatgaaaataatgtaattatagtatcgttatacataggctagcaggaaaatccgcatgagatatccatagaactgagccctgctccatttcagcaccatgccGCGGTCTCAGGTGCTGCCCAGACTCGAAACATTTCAGAACCATGGCACTGTCCCCTGACGCCAAGAAACGTGTCAGCTCTATGCAGCGGAACGTCTTTGATTTGAAATTATTCTGCAAGTGGTTATAATTTATTGCACGTTCTAGTTTTGCAGATCTACAACCTCAGAATTATAGCTAATGGATGGCAGCGAGTTACGTTTTTGTATATGGTTATGAATGACGATGCATGATAAACCATAAATTAAACGCAAAAACGTGCACTTAGACATATTTTCGTTTGGCAGAACTTTGACAAgctttgatttgttttctaatgaaaTTGACAATTCATATAGATATTAGACTTAGGCCTAATTGTGACATCATGTGTGTATGACATCTTTGAAGAATGCTCTGGCTTCAGCCAATCGGaatcgagtattcaacaatgctttgGCATAATTCAAGGACGTTCATATTCACTTCAGTTGTCTGCCGATGGTTCACTGACGTTTTTTCAAAGGAGGTATTAGTATTTCCTCTAAACAGCCTACAACAATAAGCCACTCATCATGTCAGATGACAGCAAGGTATAGTTCATTTGCCTATTTTGAGTTTAGAGGAGAAATTACTAACAATATAGTAGGTCACCAACACAGCAATAGGTCTCACTGGTTTGATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052131.1 False 347 mRNA 0.48 3 47665814 47666524
TU584240 True 1067 lncRNA 0.39 1 47666505 47667571

Neighbor

gene id symbol gene type direction distance location
LOC118964883 LOC106585477 coding downstream 131288 47533816 ~ 47534526 (-)
LOC118964878 LOC106585477 coding downstream 154804 47507163 ~ 47511010 (-)
LOC118965030 NA coding downstream 311925 47351711 ~ 47353889 (-)
LOC118965029 NA coding downstream 316802 47346834 ~ 47349012 (-)
utp15 utp15 coding downstream 609009 47045493 ~ 47056805 (-)
LOC118964882 NA coding upstream 22127 47688651 ~ 47689252 (-)
LOC118964890 NA coding upstream 267014 47933538 ~ 47934317 (-)
LOC110513487 LOC106585477 coding upstream 281791 47948315 ~ 47975648 (-)
LOC110511762 NA coding upstream 309436 47943033 ~ 47985651 (-)
LOC118965031 LOC106585477 coding upstream 349780 48016304 ~ 48017854 (-)
G515039 NA non-coding downstream 8877 47656449 ~ 47656937 (-)
G515028 NA non-coding downstream 177097 47479347 ~ 47488717 (-)
G515001 NA non-coding downstream 243230 47422084 ~ 47422584 (-)
G514974 NA non-coding downstream 313545 47347090 ~ 47352269 (-)
G514949 NA non-coding downstream 368158 47297445 ~ 47297656 (-)
G515045 NA non-coding upstream 10183 47676707 ~ 47677109 (-)
G515046 NA non-coding upstream 22830 47689354 ~ 47690063 (-)
G515047 NA non-coding upstream 27537 47694061 ~ 47694292 (-)
G515049 NA non-coding upstream 35784 47702308 ~ 47702529 (-)
G515058 NA non-coding upstream 49513 47716037 ~ 47716848 (-)
G514777 NA other downstream 649318 47016162 ~ 47016496 (-)
G514434 NA other downstream 754864 46910658 ~ 46910950 (-)
LOC110526044 LOC107699739 other downstream 1235454 46367701 ~ 46430607 (-)
apba1a apba1 other downstream 1304928 46263121 ~ 46360886 (-)
znrf3 LOC106584905 other downstream 2389427 45270568 ~ 45384850 (-)
G515094 LOC106585477 other upstream 308269 47974793 ~ 47976975 (-)
G515122 LOC106585477 other upstream 597469 48263993 ~ 48264977 (-)
LOC110512142 LOC106585477 other upstream 626322 48292846 ~ 48318495 (-)
G515139 LOC106585477 other upstream 653223 48319747 ~ 48320588 (-)
LOC118964892 LOC106585477 other upstream 709422 48375946 ~ 48387076 (-)

Expression


Co-expression Network