LOC118964888 (LOC106585521)


Basic Information

Item Value
gene id LOC118964888
gene name LOC106585521
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 47725631 ~ 48235995 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980300.1
TAGGACGTAACACAGGGATGAGGAGAAAACAATCATTTGGATCCTACACAACACGTTGTTGTACCTAAATAATTCCACAAGAGGGCGACAtataaacatttcttaaaaccaatTAACCTCTACTGCCTTCAGTCCATGACGTCCCCGACTAACTAAAAGTCTGCGTCTGCAAAAATGCTCTTTTATCATAACTCGACATGAAAGTAGCAAAGCCAAAACAGTCAATGACATGCTTTTCGGGATATACATTTAGCTATGGTGGAAGAAAAGGTAAGTGAAATATAGGGGAAGGTAgaacatgttttacagtaagtttaAAGTTGTTATCACCAATTTAGCTCTGATAGGCCTTTGGCAATCCAAGCTTTTGGGATCGTACTCAAGGCTACTTGGTTTAGGCCTGGCTATAGCCTAGGGATACAGTCCAATAATATCTccttctcctgaagtgtacactcgtTCGCTTCTTCCTACAAATCTAAaatcattggattggtggaggcatgggctagagaggaatatgctaccaaatagcaccttattccctaatgtaggcctacttttaaggaatgcactataaggaatagatcaATCAACTGGCTCACTAAATGGGGTACCGAAATACATCCAAAAGAGGTCGACACGAAATTAGACTAGGTTTATTTCTGTTTTGACCTACTGAGTCGCAGTGCTTAGTGAACAGATTTCAATGTGGGCCTAGCTGTATCGAAAACGGTTGATGGGGAAAGTGTGTAATCTGATCAATATATTTCCCCCCCAATATTAATGAGAGAATGGGAATGTGCATAAAGGTCTAACATTCCATGACGTGGTATGAAGTTCTTAAttcgtcagtggctgcaatattgTCCTCAGTAAACTCAACATGAGTGAAAACAACACAGACAAGGACAAGTTTTTCGAGATATAAAAAATACTGTATGCTATTATGGATGAAGAAAAGGTAGGTTAAATGACACTAAATATTTGGGAATGTAACTAAGGAAAACGTCATTTAAGATAACATAGGCTATTGCAAAACAAATGTCTAATTCTCTCTATTAAGTCAATCACCAGTTTAGCTctgatatggctgtagctctatGATGTCCTTTGCAAGAATCTAATCTGACATTGACATGAAATTCCTATGTCCTTCAGGTAGtacagagagatgatgatgatcccccgagggaggggagggaggttgtTGAGGAAGAACCAGTGGCCCAGCTCAAGAAGGAGCCCAAGAAGACAGGAAAGGATTGAGGAATAAACACCCGGACAGAGGATCTGTTATTGAGCTCTTGGAGAAGAATGCTCTTAAGGCTGCATTCGGCCCAGGCAACAAAGATGAGATGGAGGACTGctacccaatcctcatctcattcatgcgcaatcttactgatgaGCAATGGCAAGTGATCTATAAAGGATTTAAAAAACCTATGACAAAGGAACAGCTTGCAAAATTGTGCAAGACCATTGTCAACTCCATTACACAGACCACCCTGCAGATCCTGCTGCCGGCCCTGGCCCGCATTCTAGGGGTGACGGGCTTTTATGACAACAAATATTTGGCGAAGGAGATGTGTAGCTGTGGCGGCAGGGCTCTCCGACCAAGGTCTAGCACACCCTCTTCcaagagttcccagacctcaCTGAAAGCCCACCTGGGAATGCCAGaggacagtatcatcagcagtgcccaggagcaactgtcaaaatctgaccaaaTGGTGGCTGCAGGACAGCTTTCAGAAATAGATAAAGTGGTTGGAACTATGCTGGAGAACATTGAGAAGATAAGCAGCGAATTTGGCGAGGAATTGGTCTATCAAGAGTCACTGCGGtcttcctcctcgttgtcattctcaactgccaaatcacagaagacagagtgggaatttgcactccctggcactcccattcCTTCTGAGTTACCCGAGAGTACTGCTCAGCCCATTGTAAGATGCTCAGTCATTGACATGAGCGAATCTACTAAGCCAAAAACAATGGTGTGTGATGCCAGAACAAGCATGTTTGCCATAGCCGATACCATCATGAAGAAGGTATATCCAGAGGCAGAAGGGCAGGTTACATCTCACCCTGATCTAACAGATCCAATAGCTAGACTGGAGGAGCTCATATCTCAGGgtaggattggtgctctctcCCGTGATCTCAGTCACCAAGTCAACCGCATAATTTCCGATagcaacttgacccctctggGACTGACAGTGGTGGCTGGAAAGAGTGCATCTGATACCATCCTTTCGaagctgaagaggaatgacaaggTGGGGAAGCCCACAACTTACGAGCTGGTTCAGCTGTTTGTAGAGGAGTCTGTTAAGTGCCTCCTGCTTCCTAGTTTTGTGCCCTATTCAActtcaatgagtttggctcagggGGCCAAGGTGTTGGCTAGAGTGTCTGAAGATAGAATTTcatgctcttcttcttcttcatcagtaTTTAGTGACAGTCAGTCTCTTTACCAAAGTTATGGTAAGCCAGGTCATGTACTCTGTGGATTCTGATGCAGAAAGTAGAGGATCCTCTCCAACTGAATCTCTCCAAACATCTGAACCCACTATATCTGATGTAGGCAATCTATTGAGTGGCAAGTTCTCCCCTCGGCTGTCTCCTTCTGGCACCATTATGGCAACAAGCGAGACCTCCAATGCAGCACAAATCTTGAAGGCCAACATTGATGGAGAGGAAGTGGATACCACCAGTCATTCTGGTGTAGCTCAAAACATTGTCAGGGACGATATGTCAACCAGCCCAGACATGGTCAAAGATGTCACACTTCCAACCCCATCCTCTGATAACTTGGGCGGTGATGATGACTTCACcggcctcatc
>XM_036980299.1
TTAGACTAGGTTTATTTCTGTTTTGACCTGCTGAGTCGCAGTGCTTAGTGAACAGATTTCAATGTGGGCCTAGCTGTATCGAAAACGGTTGATGGGGAAAGTGTGTAATCTGATCTGATCAATATATTTCTCCCCCAATATTAATGAGAGAATGGGAATGTGCATAAAGGTCTAACATTCCATGACGTGGTATGAAGTTCTTAAttcgtcagtggctgcaatattgTCCTCAGTAAACTCAACATGAGTGAAAACAACACAGATAAGGACAAGTTTTTCGAGATATAAAAAATACTGTATGCTATTATGGATGAAGAAAGGGTAGGTTAAATGACACTAAATATTTGGGAATGTAACTAAGGAAAACGTCATTTAAGATAACATAGGCTATTGCAAAACAAATGTCTAATTCTCTCTATTAAGTCAATCACCAGTTTAGCTctgatatggctgtagctctatGATGTCCTTTGCAAGAATCTAATCTGACATTGACATGAAATTCCTATGTCCTTCAAGTAGtacagagagatgatgatgatcccccgagggaggggagggaggttgtTGAGGAAGAACCAGTGGCCCAGCTCAAGAAGGAGCCCAAGAAGACAGGAAAGGCAATGGCAAGTGATCTATAAAGGATTTAAAAAACCTATGACAAAGGAACAGCTTGCAAAATTGTGCAAGACCATTGTCAACTCCATTACACAGACCACCCTGCAGATCCTGCTGCCGGCCCTGGCCCGCATTCTAGGGGTGACGGGCTTTTATGACAACAAATATTTGGCGAAGGAGATGTGTAGCTGTGGCGGCAGGGCTCTCCGACCAAGGTCTAGCACACCCTCTTCcaagagttcccagacctcaCTGAAAGCCCACCTGGGAATGCCAGaggacagtatcatcagcagtgcccaggagcaactgtcaaaatctgaccaaaTGGTGGCTGCAGGACAGCTTTCAGAAATAGATAAAGTGGTTGGAACTATGCTGGAGAACATTGAGAAGATAAGCAGCGAATTTGGCGAGGAATTGGTCTATCAAGAGTCACTGCGGtcttcctcctcgttgtcattctcaactgccaaatcacagaagacagagtgggaatttgcactccctggcactcccattcCTTCTGAGTTACCCGAGAGTACTGCTCAGCCCATTGTAAGATGCTCAGTCATTGACATGAGCGAATCTACTAAGCCAAAAACAATGGTGTGTGATGCCAGAACAAGCATGTTTGCCATAGCCGATACCATCATGAAGAAGGTATATCCAGAGGCAGAAGGGCAGGTTACATCTCACCCTGATCTAACAGATCCAATAGCTAGACTGGAGGAGCTCATATCTCAGGgtaggattggtgctctctcCCGTGATCTCAGTCACCAAGTCAACCGCATAATTTCCGATagcaacttgacccctctggGACTGACAGTGGTGGCTGGAAAGAGTGCATCTGATACCATCCTTTCGaagctgaagaggaatgacaaggTGGGGAAGCCCACAACTTACGAGCTGGTTCAGCTGTTTGTAGAGGAGTCTGTTAAGTGCCTCCTGCTTCCTAGTTTTGTGCCCTATTCAActtcaatgagtttggctcagggGGCCAAGGTGTTGGCTAGAGTGTCTGAAGATAGAATTTcatgctcttcttcttcttcatcagtaTTTAGTGACAGTCAGTCTCTTTACCAAAGTTATGGTAAGCCAGGTCATGTACTCTGTGGATTCTGATGCAGAAAGTAGAGGATCCTCTCCAACTGAATCTCTCCAAACATCTGAACCCACTATATCTGATGTAGGCAATCTATTGAGTGGCAAGTTCTCCCCTCGGCTGTCTCCTTCTGGCACCATTATGGCAACAAGCGAGACCTCCAATGCAGCACAAATCTTGAAGGCCAACATTGATGGAGAGGAAGTGGATACCACCAGTCATTCTGGTGTAGCTCAAAACATTGTCAGGGACGATATGTCAACCAGCCCAGACATGGTCAAAGATGTCACACTTCCAACCCCATCCTCTGATAACTTGGGCGGTGATGATGACTTCACcggcctcatc

Function

NR:

description
uncharacterized protein LOC110526059

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980300.1 False 2874 mRNA 0.44 6 47725631 48235995
XM_036980299.1 True 2083 mRNA 0.45 4 48035242 48235995

Neighbor

gene id symbol gene type direction distance location
LOC118964879 LOC106585521 coding upstream 50138 47671331 ~ 47675493 (+)
LOC118964880 LOC106585521 coding upstream 182629 47539321 ~ 47543002 (+)
LOC118964881 LOC106585521 coding upstream 206157 47425001 ~ 47519480 (+)
LOC110526910 LOC106585521 coding upstream 230659 47450664 ~ 47494972 (+)
LOC110526909 LOC106585521 coding upstream 301412 47421241 ~ 47424219 (+)
LOC118964885 LOC106585521 coding downstream 8981 48244976 ~ 48249949 (+)
LOC118964891 LOC106585521 coding downstream 36558 48272553 ~ 48277542 (+)
LOC110512253 LOC106585521 coding downstream 63725 48299720 ~ 48302420 (+)
LOC118936658 LOC106585521 coding downstream 91873 48327868 ~ 48331446 (+)
LOC110526080 LOC106585521 coding downstream 118618 48354613 ~ 48393007 (+)
G515061 NA non-coding upstream 2787 47722434 ~ 47722844 (+)
G515057 NA non-coding upstream 8763 47716038 ~ 47716868 (+)
G515056 NA non-coding upstream 16272 47709155 ~ 47709359 (+)
G515051 NA non-coding upstream 19746 47705511 ~ 47705885 (+)
G515127 LOC106585477 non-coding downstream 54216 48290211 ~ 48290564 (+)
G515132 NA non-coding downstream 79265 48315260 ~ 48315527 (+)
G515135 LOC106585477 non-coding downstream 81735 48317730 ~ 48318344 (+)
G515137 LOC106585477 non-coding downstream 82892 48318887 ~ 48319224 (+)
G515153 NA non-coding downstream 95672 48331667 ~ 48331992 (+)
G514662 LOC106597055 other upstream 396387 47303183 ~ 47329244 (+)
G514665 NA other upstream 405581 47306438 ~ 47320050 (+)
G514499 NA other upstream 702539 47022294 ~ 47023092 (+)
G514464 NA other upstream 797917 46926842 ~ 46927714 (+)
G515189 LOC100135962 other downstream 315624 48532377 ~ 48587888 (+)
LOC110526072 LOC106587002 other downstream 712622 48948617 ~ 49037542 (+)
edf1 edf1 other downstream 947878 49183291 ~ 49187334 (+)
LOC110526066 LOC106584148 other downstream 997584 49233579 ~ 49260632 (+)
G516011 NA other downstream 1069130 49305125 ~ 49307140 (+)

Expression


Co-expression Network