LOC118964889 (LOC106585521)


Basic Information

Item Value
gene id LOC118964889
gene name LOC106585521
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 47953718 ~ 47955681 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980301.1
TCCAGAGGCAGAAGGGCAGGTTACATCTCACCCTGATCTAACAGATCCAATAGCTAGACTGGAGGAGCTCATATCTCAGGgtaggattggtgctctctcCCGTGATCTCAGTCACCAAGTCAACCGCATAATTTCCGATagcaacttgacccctctgggactgacagtggcggctggaaagagtgcatctgataccatcctttcgaagctgaagaggaatgacaaggTGGGGAAGCCCACAACTTACGAGCTGGTTCAGCTGTTTGTAGAGGAGTCTGTTAAGTGCCTCCTGCTTCCTAGTTTTGTGCCCTATTCAActtcaatgagtttggctcagggGGCCAAGGTGTTGGCTAGAGTGTCTGAAGATAGAATTTCAtgctcttcttcttcatcagtaTTTAGTGACACAGTCAGTCTCTTTACCAAAGTTATGGTAAGCCAGGTCATGTACTCTGTGGATTCTGATGCAGAAAGTAGAGGATCCTCTCCAACTGAATCTCTCCAAACATCTGAAACCACTATATCTGATGTAGGCAATCTATTGAGTGGCAAGTCCTCCCCTCGGCTGTCTCCTTCTGGCTCCATTATGGCAACAAGCGAGACCTCCAATGCAGCACAAATCTTGAAGGCCAACATTGATGGAGAGGAAGTGGATACCACCAGTCATTCTGGTGTAGCTCAAAACATTGTCAGGGACGATATGTCAACCAGCCCAGACATGGTCAAAGATGTCACACTTCCAACCCCATCCTCTGATAACTTGGGCGGTGATGATGACGTCACcggcctcatcagcatgttagtAATGAGAATTCTAACAGAAATCCAAACCCCAGCAGAAGATTACCCAGTTGACGTCACACGCAAGTCACAAGACCTGATCCCTAAAGTTATGGAGGTcttctgtgcatggtcaggctgctctgagacaCAAGCCTATCCAGAGAACTTGAGGATTCATAAAGTCTACAGAGTCGTCTATAAAAATCTGTTGGAGGAGTTTGGCTCGGAGAAAATCCTCCAACAggccgtgtcgactcaggactcTTCATTTGATAGGATTCTTGTCAAGTCTTTGAGTGAAGCGCTTCTCCACAGATGTAATGAGGCATTGAGGGCAGCCTCAAGAACATCAGTCAAAACCACCGGGCCTAAGGCTTTTCCACTGGCTGAGGATGTGAGGGCTAGCAGCGGGAAACTATCTTTTCTACAAAGGCTGGTCAGGCTGACAAGCAACTTAAAGCTATTCAAGAAGGGGAACAAGAAGGATTCCCACCGCTCTGAATCAGAACAAGTACAGACCACTGCTGAAGATGGCATGCtGCCCAGCATAGTGCCACATGCTGCCATGTCTGCACTGCCAAAGGATCTCCCCGCCAGCTCCCAACAGGAGACGCCTCATAAACGTCCACTTCTCGTCAGGATGTTTTCTGCCATCTCCAAAGGCCTGTTCAAGCCCTTCAAACAGTCCTTAAAGACCAAGTAACTTCAGACAATTTATTAAACGTCATTCATTGCATTAAA
>XM_036980302.1
TCCAGAGGCAGAAGGGCAGGTTACATCTCACCCTGATCTAACAGATCCAATAGCTAGACTGGAGGAGCTCATATCTCAGGgtaggattggtgctctctcCCGTGATCTCAGTCACCAAGTCAACCGCATAATTTCCGATagcaacttgacccctctgggactgacagtggcggctggaaagagtgcatctgataccatcctttcgaagctgaagaggaatgacaaggTGGGGAAGCCCACAACTTACGAGCTGGTTCAGCTGTTTGTAGAGGAGTCTGTTAAGTGCCTCCTGCTTCCTAGTTTTGTGCCCTATTCAActtcaatgagtttggctcagggGGCCAAGGTGTTGGCTAGAGTGTCTGAAGATAGAATTTCAtgctcttcttcttcatcagtaTTTAGTGACACAGTCAGTCTCTTTACCAAAGTTATGGTAAGCCAGGTCATGTACTCTGTGGATTCTGATGCAGAAAGTAGAGGATCCTCTCCAACTGAATCTCTCCAAACATCTGAAACCACTATATCTGATGTAGGCAATCTATTGAGTGGCAAGTCCTCCCCTCGGCTGTCTCCTTCTGGCTCCATTATGGCAACAAGCGAGACCTCCAATGCAGCACAAATCTTGAAGGCCAACATTGATGGAGAGGAAGTGGATACCACCAGTCATTCTGGTGTAGCTCAAAACATTGTCAGGGACGATATGTCAACCAGCCCAGACATGGTCAAAGATGTCACACTTCCAACCCCATCCTCTGATAACTTGGGCTAAAGTTATGGAGGTcttctgtgcatggtcaggctgctctgagacaCAAGCCTATCCAGAGAACTTGAGGATTCATAAAGTCTACAGAGTCGTCTATAAAAATCTGTTGGAGGAGTTTGGCTCGGAGAAAATCCTCCAACAggccgtgtcgactcaggactcTTCATTTGATAGGATTCTTGTCAAGTCTTTGAGTGAAGCGCTTCTCCACAGATGTAATGAGGCATTGAGGGCAGCCTCAAGAACATCAGTCAAAACCACCGGGCCTAAGGCTTTTCCACTGGCTGAGGATGTGAGGGCTAGCAGCGGGAAACTATCTTTTCTACAAAGGCTGGTCAGGCTGACAAGCAACTTAAAGCTATTCAAGAAGGGGAACAAGAAGGATTCCCACCGCTCTGAATCAGAACAAGTACAGACCACTGCTGAAGATGGCATGCtGCCCAGCATAGTGCCACATGCTGCCATGTCTGCACTGCCAAAGGATCTCCCCGCCAGCTCCCAACAGGAGACGCCTCATAAACGTCCACTTCTCGTCAGGATGTTTTCTGCCATCTCCAAAGGCCTGTTCAAGCCCTTCAAACAGTCCTTAAAGACCAAGTAACTTCAGACAATTTATTAAACGTCATTCATTGCATTAAA

Function

NR:

description
uncharacterized protein LOC110512141 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980301.1 False 1527 mRNA 0.48 3 47953718 47955681
XM_036980302.1 True 1408 mRNA 0.48 4 47953718 47955681

Neighbor

gene id symbol gene type direction distance location
LOC118964879 LOC106585521 coding upstream 278225 47671331 ~ 47675493 (+)
LOC118964880 LOC106585521 coding upstream 410716 47539321 ~ 47543002 (+)
LOC118964881 LOC106585521 coding upstream 434244 47425001 ~ 47519480 (+)
LOC110526910 LOC106585521 coding upstream 458746 47450664 ~ 47494972 (+)
LOC110526909 LOC106585521 coding upstream 529499 47421241 ~ 47424219 (+)
LOC110512140 LOC106585521 coding downstream 42225 47997906 ~ 48003429 (+)
LOC118964887 LOC106585521 coding downstream 81406 48037087 ~ 48039797 (+)
LOC118964885 LOC106585521 coding downstream 289295 48244976 ~ 48249949 (+)
LOC118964891 LOC106585521 coding downstream 316872 48272553 ~ 48277542 (+)
LOC110512253 LOC106585521 coding downstream 344039 48299720 ~ 48302420 (+)
G515061 NA non-coding upstream 230874 47722434 ~ 47722844 (+)
G515057 NA non-coding upstream 236850 47716038 ~ 47716868 (+)
G515056 NA non-coding upstream 244359 47709155 ~ 47709359 (+)
G515051 NA non-coding upstream 247833 47705511 ~ 47705885 (+)
G515127 LOC106585477 non-coding downstream 334530 48290211 ~ 48290564 (+)
G515132 NA non-coding downstream 359579 48315260 ~ 48315527 (+)
G515135 LOC106585477 non-coding downstream 362049 48317730 ~ 48318344 (+)
G515137 LOC106585477 non-coding downstream 363206 48318887 ~ 48319224 (+)
G515153 NA non-coding downstream 375986 48331667 ~ 48331992 (+)
G515069 NA other upstream 1464 47950006 ~ 47952254 (+)
G514662 LOC106597055 other upstream 624474 47303183 ~ 47329244 (+)
G514665 NA other upstream 633668 47306438 ~ 47320050 (+)
G514499 NA other upstream 930626 47022294 ~ 47023092 (+)
G515189 LOC100135962 other downstream 595938 48532377 ~ 48587888 (+)
LOC110526072 LOC106587002 other downstream 992936 48948617 ~ 49037542 (+)
edf1 edf1 other downstream 1228192 49183291 ~ 49187334 (+)
LOC110526066 LOC106584148 other downstream 1277898 49233579 ~ 49260632 (+)
G516011 NA other downstream 1349444 49305125 ~ 49307140 (+)

Expression


Co-expression Network