LOC118964887 (LOC106585521)


Basic Information

Item Value
gene id LOC118964887
gene name LOC106585521
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 48037087 ~ 48039797 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980297.1
tgtgtgcgtgcagttaTTCCTAACCCTCAAACTGATGAACAATAATTTCCCCATTTCAATATTTTCCAGCTTTCTAACAGGTGTGTTTTGCAATATCTAATGCACACatataaattacatttagaatacTCAATTATAATGCTTGTTAGATTTGTTAGCACTAAGATATCGATTTTCCAACTTCAGACAGCAATTAACATGCTttgcttgttcattttaaagttcccagacctcaCTGAAAGCCCACCTGGTAATGCCAGaggacagtatcatcagcagtgtccaggagcaactgtcaaaatctgaccaaaTGGTGGCTGCAGGACAGCTTTCACAAATAGATAAAGTGGTTGGAACTATGCTGGAGAACATTGAGAAGATAAGCAGCGAATGTGGCGAGGAATTGGTCTATCAAGAGTCACTGCGGtcttcctcctcgttgtcattctcaactgccaaatcacagaagacagagtgggaatttgcactccctggcactcccattcCTTCTGAGTTACCCGAGAGTACTGCTCAGCCCATTGTAAGATGTTCAGTCATTGACATGAGCAAATCTACTAAGCCAAAAACAATGGTGTGTGATGCCAGAACAAGCATGTTTGCCATAGCCGATACCATCATGAAGAAGGTATATCCAGAGGCAGAAGGGCAGGTTACATCTCACCCTGATCTAACAGATGCAATAGCTAGACTGGAGGAGCTCATATCTCAGGgtaggattggtgctctctcCCGTGATCTCAGTCACCAAGTCACCCGCATAATTTCCGATagcaacttgacccctctgggactgacagtggcggctggaaagagtgcatctgataccatcctttcgaagctgaagaggaatgacaaggTGGGGAAGCACACAACTTACGAGCTGGTTCAGCTGTTTGTAGAGGAGTCTGTTAAGTGCCTCCTGCTTCCTAGTTTTGTGCCCTATTCAActtcaatgagtttggctcagggGGCCAAGGTGTTGGCTAGAGTGTCTGAAGATAGAATTTCTagctcttcttcttcatcagtaTTTAGTGACACAGTCAGTCTCTTTACCAAAGTTATGGTAAGCCAGGTCATGTACTCTGTGCATTCTGATGCAGAAAGTAGAGGATCCTCTCCAACTGAATCTCTCCAAACATCTGAAACCACTATATCTGATGTAGGCAATCTATTGAGTGGCAAGTCCTCCCCTCGGCTGTCTCCTTCTGGCACCATTATGGCAACAAGCGAGACCTCCAATGCAGCACAAATCTTGAAGGCCAACATTGATGGAGAGGAAGTGGATACCACCAGTCATTCTGGTGTAGCTCAAAACATTGTCAGGGACGATATGTCAACCAGCCCAGACATGGTCAAAGATGTCACACTTCCAACCCCATCCTCTGATAACTTGGGCAGTGATGATGACGTCACcggcctcatcagcatgttagtAATGAGAATTCTAACAGAAATCCAAACCCCAGCAGAAGATTACCCAGTTGACGCCACACGCAAGTCACAAGACCTGATCCCTAAAGTTATGGAGGTcttctgtgcatggtcaggctgctctgagacaCAAGCCTATCCAGAGAACTTGAGGATTCATAAAGTCTACAGAGTCGTCTATAAAAATCTGTTGGAGGAGTTTGGCTCGGAGAAAATCCTCCAACAggccgtgtcgactcaggactcTTCATTTGATAGGATTCTTGTCAAGTCTTTGAGTGAAGCGCTTCTCCACAGATGTAATGAGGCATTGAGGGCAGCCTCAAGAACATCAGTCAAAACCACCGGGCCTAAGGCTCTTCCACTGGCTGAGGATGTGAGGGCTAGCAGCGGGAAACTATCTTTTCTACAAAGGCTGGTCAGGCTGACAAGCAACTTAAAGCTATTCAAGAAGGGGAACAAGAAGGATTCCCACCGCTCTGAATCAGAACAAGTACAGACCACTGCTGAAGATGGCATGCtgCCCAGCATAGTGCCACATGCTGCCATGTCTGCACTGCCAAAGGATCTCCCCGCCAGCTCCCAACAGGAGACGCCTCACAAACGTCCACTTCTCGTCAGGATGTTTTCTGCCATCTCCAAAGGCCTGTTCAAGCCCTTCAAACAGTCCTTAAAGACCAAGTAACGTCAGACAATTTATTAAACGTCATTCATTGCATTAAATTGGCCTTTGTCTTCTTATGTGCTCCCGTTAACAGACCAGATTACAATACTGGTCTTTTAAATGTTAGCAGTGATAGCAACATGa
>XM_036980298.1
tgtgcgtgcagttaTTCCTAACCCTCAAACTGATGAACAATAATTTCCCCATTTCAATATTTTCCAGCTTTCTAACAGGTGTGTTTTGCAATATCTAATGCACACatataaattacatttagaatacTCAATTATAATGCTTGTTAGATTTGTTAGCACTAAGATATCGATTTTCCAACTTCAGACAGCAATTAACATGCTttgcttgttcattttaaagttcccagacctcaCTGAAAGCCCACCTGGTAATGCCAGaggacagtatcatcagcagtgtccaggagcaactgtcaaaatctgaccaaaTGGTGGCTGCAGGACAGCTTTCACAAATAGATAAAGTGGTTGGAACTATGCTGGAGAACATTGAGAAGATAAGCAGCGAATGTGGCGAGGAATTGGTCTATCAAGAGTCACTGCGGtcttcctcctcgttgtcattctcaactgccaaatcacagaagacagagtgggaatttgcactccctggcactcccattcCTTCTGAGTTACCCGAGAGTACTGCTCAGCCCATTGTAAGATGTTCAGTCATTGACATGAGCAAATCTACTAAGCCAAAAACAATGGTGTGTGATGCCAGAACAAGCATGTTTGCCATAGCCGATACCATCATGAAGAAGGTATATCCAGAGGCAGAAGGGCAGGTTACATCTCACCCTGATCTAACAGATGCAATAGCTAGACTGGAGGAGCTCATATCTCAGGgtaggattggtgctctctcCCGTGATCTCAGTCACCAAGTCACCCGCATAATTTCCGATagcaacttgacccctctgggactgacagtggcggctggaaagagtgcatctgataccatcctttcgaagctgaagaggaatgacaaggTGGGGAAGCACACAACTTACGAGCTGGTTCAGCTGTTTGTAGAGGAGTCTGTTAAGTGCCTCCTGCTTCCTAGTTTTGTGCCCTATTCAActtcaatgagtttggctcagggGGCCAAGGTGTTGGCTAGAGTGTCTGAAGATAGAATTTCTagctcttcttcttcatcagtaTTTAGTGACACAGTCAGTCTCTTTACCAAAGTTATGGTAAGCCAGGTCATGTACTCTGTGCATTCTGATGCAGAAAGTAGAGGATCCTCTCCAACTGAATCTCTCCAAACATCTGAAACCACTATATCTGATGTAGGCAATCTATTGAGTGGCAAGTCCTCCCCTCGGCTGTCTCCTTCTGGCACCATTATGGCAACAAGCGAGACCTCCAATGCAGCACAAATCTTGAAGGCCAACATTGATGGAGAGGAAGTGGATACCACCAGTCATTCTGGTGTAGCTCAAAACATTGTCAGGGACGATATGTCAACCAGCCCAGACATGGTCAAAGATGTCACACTTCCAACCCCATCCTCTGATAACTTGGGCTAAAGTTATGGAGGTcttctgtgcatggtcaggctgctctgagacaCAAGCCTATCCAGAGAACTTGAGGATTCATAAAGTCTACAGAGTCGTCTATAAAAATCTGTTGGAGGAGTTTGGCTCGGAGAAAATCCTCCAACAggccgtgtcgactcaggactcTTCATTTGATAGGATTCTTGTCAAGTCTTTGAGTGAAGCGCTTCTCCACAGATGTAATGAGGCATTGAGGGCAGCCTCAAGAACATCAGTCAAAACCACCGGGCCTAAGGCTCTTCCACTGGCTGAGGATGTGAGGGCTAGCAGCGGGAAACTATCTTTTCTACAAAGGCTGGTCAGGCTGACAAGCAACTTAAAGCTATTCAAGAAGGGGAACAAGAAGGATTCCCACCGCTCTGAATCAGAACAAGTACAGACCACTGCTGAAGATGGCATGCtgCCCAGCATAGTGCCACATGCTGCCATGTCTGCACTGCCAAAGGATCTCCCCGCCAGCTCCCAACAGGAGACGCCTCACAAACGTCCACTTCTCGTCAGGATGTTTTCTGCCATCTCCAAAGGCCTGTTCAAGCCCTTCAAACAGTCCTTAAAGACCAAGTAACGTCAGACAATTTATTAAACGTCATTCATTGCATTAAATTGGCCTTTGTCTTCTTATGTGCTCCCGTTAACAGACCAGATTACAATACTGGTCTTTTAAATGTTAGCAGTGATAGCAA

Function

NR:

description
uncharacterized protein LOC110512141 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980297.1 False 2263 mRNA 0.46 3 48037087 48039797
XM_036980298.1 True 2137 mRNA 0.46 4 48037089 48039792

Neighbor

gene id symbol gene type direction distance location
LOC110512140 LOC106585521 coding upstream 33658 47997906 ~ 48003429 (+)
LOC118964889 LOC106585521 coding upstream 81406 47953718 ~ 47955681 (+)
LOC118964879 LOC106585521 coding upstream 361594 47671331 ~ 47675493 (+)
LOC118964880 LOC106585521 coding upstream 494085 47539321 ~ 47543002 (+)
LOC118964881 LOC106585521 coding upstream 517613 47425001 ~ 47519480 (+)
LOC118964885 LOC106585521 coding downstream 205179 48244976 ~ 48249949 (+)
LOC118964891 LOC106585521 coding downstream 232756 48272553 ~ 48277542 (+)
LOC110512253 LOC106585521 coding downstream 259923 48299720 ~ 48302420 (+)
LOC118936658 LOC106585521 coding downstream 288071 48327868 ~ 48331446 (+)
LOC110526080 LOC106585521 coding downstream 314816 48354613 ~ 48393007 (+)
G515061 NA non-coding upstream 314243 47722434 ~ 47722844 (+)
G515057 NA non-coding upstream 320219 47716038 ~ 47716868 (+)
G515056 NA non-coding upstream 327728 47709155 ~ 47709359 (+)
G515051 NA non-coding upstream 331202 47705511 ~ 47705885 (+)
G515127 LOC106585477 non-coding downstream 250414 48290211 ~ 48290564 (+)
G515132 NA non-coding downstream 275463 48315260 ~ 48315527 (+)
G515135 LOC106585477 non-coding downstream 277933 48317730 ~ 48318344 (+)
G515137 LOC106585477 non-coding downstream 279090 48318887 ~ 48319224 (+)
G515153 NA non-coding downstream 291870 48331667 ~ 48331992 (+)
G515069 NA other upstream 84833 47950006 ~ 47952254 (+)
G514662 LOC106597055 other upstream 707843 47303183 ~ 47329244 (+)
G514665 NA other upstream 717037 47306438 ~ 47320050 (+)
G514499 NA other upstream 1013995 47022294 ~ 47023092 (+)
G515189 LOC100135962 other downstream 511822 48532377 ~ 48587888 (+)
LOC110526072 LOC106587002 other downstream 908820 48948617 ~ 49037542 (+)
edf1 edf1 other downstream 1144076 49183291 ~ 49187334 (+)
LOC110526066 LOC106584148 other downstream 1193782 49233579 ~ 49260632 (+)
G516011 NA other downstream 1265328 49305125 ~ 49307140 (+)

Expression


Co-expression Network