LOC118964885 (LOC106585521)


Basic Information

Item Value
gene id LOC118964885
gene name LOC106585521
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 48244976 ~ 48249949 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980290.1
TAACTAAAAGTCTGCGTCTGCAAAAATGCTCTTTTATCATAACTCGACATGAGAGTAGCAAAGCCAAAACAGTCAATGACATGCTTTTCGATATATAAAATGAGCTATGGTGGAAGAAAAGGTAGtacagagagatgatgatgatcccccgagggaggggagggaggttgtTGAGGAAGAACCAGTGGCACAGCTCAAGAAGGAGCCCAAGAAGACAGGAAAGGCGAAGAGGAAAAGTAGTGCCAAGAAGTCAGGGGAGCAGGGCACTGATACGGATGCAGGATTGAGGAATAAACACCCGGACAGAGGATCTGTTATTGAGCTCTTGGAGAAGAATGCTCTTAAGGCTGCATTCGGCCCAGGCAACAAAGATGAGATGGAGGACTGctacccaatcctcatctcattcatgcgcaatcttactgatgaGCAATGGCAAGTGATCTATAAAGGATTTAAAAAACCTATGACAAAGGAACAGCTTGCAAAATTGTGCAAGACCATTGTCAACTTCATTGCACAGACCACCCTGCAGATCCTGCTGCCGGCCCTGGCCCGCATTCTAGGGGTGACGGGCTTTTATGACAACGCTGACTCACTCAAGAGGGGCGGCAGTGCAAGATCCTTCACTGCCTTTGagcagaaaagactagaactcatcCAGGAAGTTAAATATTTGGCAAAGGAGATGTGTAACTGTGGCGGCAGGGCTCTCCGACCAAGGTCTAGCACACCCTCTTCcaagagttcccagacctcaCTGAAAGCCCACCTGGGAATGCCAGaggacagtatcatcagcagtgtccaggagcaactgtcaaaatctgaccaaaTGGTGGCTGCAGGACAGCTTTCACAAATAGATAAAGTGGTTGGAACTATGCTGGAGAACATTGAGAAGATAAGCAGCGAATTTGGCGAGGAATTGGTCTATCAAGAGTCACTGCGGTCTTCTTCCTCGTTGTCATTCTCAACTGCCAAATCACAGAAGACAGAGTGGGAATTTGcactccctggcactcccattcCTTCTGAGTTACCCGAGAGTACTGCTCAGCCCATTGTAAGATGCTCAGTCATTGACATGAGCGAATCTAGTAAGCCAAAAACAATGGTGTGTGATGCCAGAACAAGCATGTTTGCCATAGCCGATACCATCATGAAGAAAGTATATCCAGAGGCAGAAGGGCAGGTTACATCTCACCCTGATCTAACAGATGCAATAGCTAGACTGGAGGAGCTCATATCTCAGGGTAAGATTGGTGCTCTCTCCCGTGATCTCAGTCACCAAGTCAACCGCATAATTTCTGATagcaacttgacccctctggGACTGACAGTGGCGGCTGGAAAGAGTGCATCTGATACCATCGTTTCGaagctgaagaggaatgacaaggTGGGGAAGCCCACAACTTACGAGCTGGTTCAGCTGTTTGTAGAGGAGTCTGTTAAGTGCCTCCTGCTTCCTAGTTTTGTGCCCTATTCAActtcaatgagtttggctcagggGGCCAAGGTTTTGGCTAGAGTGTCTGAAGATAGAATTTCATGCTCTTCTTCCTCATCAGTATTTAGTGACACAGTCAGTCTCTTTACCAAAGTTATGGTAAGCCAGGTCATGTACTCTGTGGATTCTGATGCAGAAAGTATAGGATCCTCTCCAACTGAATCTCTCCAAACATCTGAAACCACTATATCTGATGTAGGCAATCTATTGAGTGACAAGTCCTCCCCTCGGCTGTCTCCTTCTGGCACCATTATGGCAACAAGCGAGACCTCCAATGCGGCACAAATCTTGAAGGCCAACATTGATGGAGAGGAAGTGGATACCACCAGTCATTCTGGTGTAGCTCAAAACATTGTCAGGGACGATATGTCAACCAGCCCAGACATGGTCAAAGATGTCACACTTCCAACCCCATCCTCTGATAACTTGGGCAGTGATGATGACGTCACCGACCTCATCAGCATGTTAGTAATGAGAATTCTAACAGAAATCCAAACCCCAGCAGAAGATTACCCAGTTGACGTCACACGCAAGTCACAAGACCTGATCCCCAAAGTTATGGAGGTcttctgtgcatggtcaggctgctctgagacaCAAGCCTATCCAGAGAACTTGAGGATTCATAAAGTCTACAGAGTCGTCTATAAAAATCTGTTGGAGGAGTTTGGCTCGGAGAAAATCCTCCAACAggccgtgtcgactcaggactcTTCATTTGATAGGATTCTTGTCAAGTCTTTGAGTGAAGCGCTTCTCCACAGATGTAATGAGGCATTGAGGGCAGCCTCAAGAACATCAGTCAAAACCACCGGGCCTAAGGCTCTTCCACTGGCTGAGGATGTGAGGGCTAGCAGCGGGAAACTATCTTTTCTACAAAGGCTGGTCAGGCTGACAAGCAACTTAAAGCTATTCAAGAAGGGGAACAAGAAGGATTCCCACCGCTCTGAATCAGAACAAGTACAGACCACTGCTGAAGATGGCATGCTGCCCAGCATAGTGCCACATGCTGCCATGTCTGCACTGCCAAAGGATCTCCCCGCCAGCTCCCAACAGGAGACGCCTCACAAACGTCCACTTCTCGTCAGGATGTTTTCTGCCATCTCCAAAGGCCTGTTCAAGCCCTTCAAACAGTCCTTAAAGACCAAGTAACTTCAGACAATTTATTAAACGTCATTCATTGCATTAAA
>XM_036980291.1
CGGAATGTAACTAAGGAAAACGTCATTTAAGATAACATAGGCTATTGCAAAACAAATGTCTAATTCTCTCTATTAAGTCAATCACCAGTTTAGCTctgatatggctgtagctctatGATGTCCTTTGCAAGAATCTAATCTGACATTGACATGAAATTCCTATGTCCTTCAGGTAGtacagagagatgatgatgatcccccgagggaggggagggaggttgtTGAGGAAGAACCAGTGGCACAGCTCAAGAAGGAGCCCAAGAAGACAGGAAAGGCAATGGCAAGTGATCTATAAAGGATTTAAAAAACCTATGACAAAGGAACAGCTTGCAAAATTGTGCAAGACCATTGTCAACTTCATTGCACAGACCACCCTGCAGATCCTGCTGCCGGCCCTGGCCCGCATTCTAGGGGTGACGGGCTTTTATGACAACGCTGACTCACTCAAGAGGGGCGGCAGTGCAAGATCCTTCACTGCCTTTGagcagaaaagactagaactcatcCAGGAAGTTAAATATTTGGCAAAGGAGATGTGTAACTGTGGCGGCAGGGCTCTCCGACCAAGGTCTAGCACACCCTCTTCcaagagttcccagacctcaCTGAAAGCCCACCTGGGAATGCCAGaggacagtatcatcagcagtgtccaggagcaactgtcaaaatctgaccaaaTGGTGGCTGCAGGACAGCTTTCACAAATAGATAAAGTGGTTGGAACTATGCTGGAGAACATTGAGAAGATAAGCAGCGAATTTGGCGAGGAATTGGTCTATCAAGAGTCACTGCGGTCTTCTTCCTCGTTGTCATTCTCAACTGCCAAATCACAGAAGACAGAGTGGGAATTTGcactccctggcactcccattcCTTCTGAGTTACCCGAGAGTACTGCTCAGCCCATTGTAAGATGCTCAGTCATTGACATGAGCGAATCTAGTAAGCCAAAAACAATGGTGTGTGATGCCAGAACAAGCATGTTTGCCATAGCCGATACCATCATGAAGAAAGTATATCCAGAGGCAGAAGGGCAGGTTACATCTCACCCTGATCTAACAGATGCAATAGCTAGACTGGAGGAGCTCATATCTCAGGGTAAGATTGGTGCTCTCTCCCGTGATCTCAGTCACCAAGTCAACCGCATAATTTCTGATagcaacttgacccctctggGACTGACAGTGGCGGCTGGAAAGAGTGCATCTGATACCATCGTTTCGaagctgaagaggaatgacaaggTGGGGAAGCCCACAACTTACGAGCTGGTTCAGCTGTTTGTAGAGGAGTCTGTTAAGTGCCTCCTGCTTCCTAGTTTTGTGCCCTATTCAActtcaatgagtttggctcagggGGCCAAGGTTTTGGCTAGAGTGTCTGAAGATAGAATTTCATGCTCTTCTTCCTCATCAGTATTTAGTGACACAGTCAGTCTCTTTACCAAAGTTATGGTAAGCCAGGTCATGTACTCTGTGGATTCTGATGCAGAAAGTATAGGATCCTCTCCAACTGAATCTCTCCAAACATCTGAAACCACTATATCTGATGTAGGCAATCTATTGAGTGACAAGTCCTCCCCTCGGCTGTCTCCTTCTGGCACCATTATGGCAACAAGCGAGACCTCCAATGCGGCACAAATCTTGAAGGCCAACATTGATGGAGAGGAAGTGGATACCACCAGTCATTCTGGTGTAGCTCAAAACATTGTCAGGGACGATATGTCAACCAGCCCAGACATGGTCAAAGATGTCACACTTCCAACCCCATCCTCTGATAACTTGGGCAGTGATGATGACGTCACCGACCTCATCAGCATGTTAGTAATGAGAATTCTAACAGAAATCCAAACCCCAGCAGAAGATTACCCAGTTGACGTCACACGCAAGTCACAAGACCTGATCCCCAAAGTTATGGAGGTcttctgtgcatggtcaggctgctctgagacaCAAGCCTATCCAGAGAACTTGAGGATTCATAAAGTCTACAGAGTCGTCTATAAAAATCTGTTGGAGGAGTTTGGCTCGGAGAAAATCCTCCAACAggccgtgtcgactcaggactcTTCATTTGATAGGATTCTTGTCAAGTCTTTGAGTGAAGCGCTTCTCCACAGATGTAATGAGGCATTGAGGGCAGCCTCAAGAACATCAGTCAAAACCACCGGGCCTAAGGCTCTTCCACTGGCTGAGGATGTGAGGGCTAGCAGCGGGAAACTATCTTTTCTACAAAGGCTGGTCAGGCTGACAAGCAACTTAAAGCTATTCAAGAAGGGGAACAAGAAGGATTCCCACCGCTCTGAATCAGAACAAGTACAGACCACTGCTGAAGATGGCATGCTGCCCAGCATAGTGCCACATGCTGCCATGTCTGCACTGCCAAAGGATCTCCCCGCCAGCTCCCAACAGGAGACGCCTCACAAACGTCCACTTCTCGTCAGGATGTTTTCTGCCATCTCCAAAGGCCTGTTCAAGCCCTTCAAACAGTCCTTAAAGACCAAGTAACTTCAGACAATTTATTAAACGTCATTCATTGCATTAAA

Function

NR:

description
uncharacterized protein LOC110512141 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980290.1 False 2703 mRNA 0.47 9 48244976 48249949
XM_036980291.1 True 2548 mRNA 0.47 6 48245835 48249949

Neighbor

gene id symbol gene type direction distance location
LOC118964888 LOC106585521 coding upstream 8981 47725631 ~ 48235995 (+)
LOC118964887 LOC106585521 coding upstream 205179 48037087 ~ 48039797 (+)
LOC110512140 LOC106585521 coding upstream 241547 47997906 ~ 48003429 (+)
LOC118964889 LOC106585521 coding upstream 289295 47953718 ~ 47955681 (+)
LOC118964879 LOC106585521 coding upstream 569483 47671331 ~ 47675493 (+)
LOC118964891 LOC106585521 coding downstream 22604 48272553 ~ 48277542 (+)
LOC110512253 LOC106585521 coding downstream 49771 48299720 ~ 48302420 (+)
LOC118936658 LOC106585521 coding downstream 77919 48327868 ~ 48331446 (+)
LOC110526080 LOC106585521 coding downstream 104664 48354613 ~ 48393007 (+)
LOC110514397 LOC106585521 coding downstream 107600 48357549 ~ 48358334 (+)
G515061 NA non-coding upstream 522132 47722434 ~ 47722844 (+)
G515057 NA non-coding upstream 528108 47716038 ~ 47716868 (+)
G515056 NA non-coding upstream 535617 47709155 ~ 47709359 (+)
G515051 NA non-coding upstream 539091 47705511 ~ 47705885 (+)
G515127 LOC106585477 non-coding downstream 40262 48290211 ~ 48290564 (+)
G515132 NA non-coding downstream 65311 48315260 ~ 48315527 (+)
G515135 LOC106585477 non-coding downstream 67781 48317730 ~ 48318344 (+)
G515137 LOC106585477 non-coding downstream 68938 48318887 ~ 48319224 (+)
G515153 NA non-coding downstream 81718 48331667 ~ 48331992 (+)
G515069 NA other upstream 292722 47950006 ~ 47952254 (+)
LOC118964881 LOC106585521 other upstream 728266 47425001 ~ 47519480 (+)
G514662 LOC106597055 other upstream 915732 47303183 ~ 47329244 (+)
G514665 NA other upstream 924926 47306438 ~ 47320050 (+)
G514499 NA other upstream 1221884 47022294 ~ 47023092 (+)
G515189 LOC100135962 other downstream 301670 48532377 ~ 48587888 (+)
LOC110526072 LOC106587002 other downstream 698668 48948617 ~ 49037542 (+)
edf1 edf1 other downstream 933924 49183291 ~ 49187334 (+)
LOC110526066 LOC106584148 other downstream 983630 49233579 ~ 49260632 (+)
G516011 NA other downstream 1055176 49305125 ~ 49307140 (+)

Expression


Co-expression Network