LOC118964891 (LOC106585521)


Basic Information

Item Value
gene id LOC118964891
gene name LOC106585521
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 48272553 ~ 48277542 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052135.1
TAGGCTATTGCAAAACAAATGTCTAATTCTCTCTATTAAATCAATCACCAGTTTAGCTctgatatggctgtagctctatGATGTCCTTTGCAAGAATCTAATCTGACATTGACATGAAATTCCTATGTCCTTCAAGTAGtacagagagatgatgatgatcccccgagggaggggagggaggttgtTGAGGAAGAACCAGTGGCCCAGCTCAAGAAGGAGCCCAAGAAGACAGGAAAGGTGAAGAGGAAAAGTAGTGCCAAGAAGTCAGGGGAGCAGGGCACTGATACGGATGCAGGATTGAGGAATAAACACCCGGACAAAGGATCTGTTATTGAGCTCTTGGAGAAGAATGCTCTTAAGGCTGCATTCGGTCCAGGCAACAAAGATGAGATGGAGGACTGctacccaatcctcatctcattcatgcgcaatcttactgatgagtatgttagaaccatgttttgctctagcctcacatattttgtgcagaaggaaataaaaagtaagtaaaacacatttattttttctttTCTATGTAATGGCAAGTGATCTATAAAGGATTTAAAAACCTGTAAGTTTCTCCATCAGCCTTTGACCTTTGATTTGGGAATGTTGTGTTGAATCAAGAGAGAGGAATTAACCATAGTTCTATTCTGCTATTACGTTCATTAATCTGTCATACTTCATCCAACTTTTAATTCAGTCACAGATAAGGAAAACGATGTTGGTGAAATGCATTCTGTTCAatctagaatactttacatcaGAGTCTCATTGCCaaacctgctgtgttctgttttgtttgtgCAATGCAGATGACAAAGGAACAGCTTGCAAAATTGTGCAAGACCATTGTCAACTTCATTGCACAGACCACCCTGCAGATCCTGCTGCCGGCCCTGGCCCGCATTCTAGGGGTGACGGGCTTTTATGACAACGCTGACTCACTCAAGATGGGTGGCAGTGCAAGATCCTTCACTGCCTTTGAGCAGAAAAGActggagctcatccaggaagttaAATATTTGGCGAAGTAACTGTGGCAGCAGGGCTCTCCGACCAAGGTCTAGCACACCCTCTTCcaagaggtactgtatgttccccatagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcagttaTTCCTAACCCTCAAACTGATGAACAATAATTTCCCCATTTCAATATTTTCCAGCTTTCTAACAGGTGTGTTTTGCAATATCTAATGCACACatataaattacatttagaatacTCAATTATAATGCTTGTTAGATTTGTTAGCACTAAGATATCGATTTTCCAACTTCAGACAGCAATTAACATGCTttgcttgttcattttaaagttcccagacctcaCTGAAAGCCCACCTGGTAATGCCAGaggacagtatcatcagcagtgtccaggagcaactgtcaaaatctgaccaaaTGGTGGCTGCAGGACAGCTTTCACAAATAGATAAAGTGGTTGGAACTATGCTGGAGAACATTGAGAAGATAAGCAGCGAATGTGGCGAGGAATTGGTCTATCAAGAGTCACTGCGGtcttcctcctcgttgtcattctcaactgccaaatcacagaagacagagtgggaatttgcactccctggcactcccattcCTTCTGAGTTACCCGAGAGTACTGCTCAGCCCATTGTAAGATGTTCAGTCATTGACATGAGCAAATCTACTAAGCCAAAAACAATGGTGTGTGATGCCAGAACAAGCATGTTTGCCATAGCCGATACCATCATGAAGAAGGTATATCCAGAGGCAGAAGGGCAGGTTACATCTCGCCCTGATCTAACAGATGCAATAGCTAGACTGGAGGAGCTCATATCTCAGGgtaggattggtgctctctcCCGTGATCTCAGTCACCAAGTCACCCGCATAATTTCCGATagcaacttgacccctctgggactgacagtggcggctggaaagagtgcatctgataccatcctttcgaagctgaagaggaatgacaaggTGGGGAAGCACACAACTTACGAGCTGGTTCAGCTGTTTGTAGAGGAGTCTGTTAAGTGCCTCCTGCTTCCTAGTTTTGTGCCCTATTCAActtcaatgagtttggctcagggGGCCACGGTGTTGGCTAGAGTGTCTGAAGATAGAATTTCTagctcttcttcttcatcagtaTTTAGTGACTCAGTCAGTCTCTTTACCAAAGTTATGGTAAGCCAGGTCATGTACTCTGTGCATTCTGATGCAGAAAGTAGAGGATCCTCTCCAACTGAATCTCTCCAAACATCTGAAACCACTATATCTGATGTAGGCAATCTATTGAGTGGCAAGTCCTCCCCTCGGCTGTCTCCTTCTGGCACCATTATGGCAACAAGCGAGACCTCCAATGCAGCACAAATCTTGAAGGCCAACATTGATGGAGAGGAAGTGGATACCACCAGTCATTCTGGTGTAGCTCAAAACATTGTCAGGGACGATATGTCAACCAGCCCAGACATGGTCAAAGATGTCACACTTCCAACCCCATCCTCTGATAACTTGGGCAGTGATGATGACGTCACcggcctcatcagcatgttagtAATGAGAATTCTAACAGAAATCCAAACCCCAGCAGAAGATTACCCAGTTGACGCCACACGCAAGTCACAAGACCTGATCCCTAAAGTTATGGAGGTcttctgtgcatggtcaggctgctctgagacaCAAGCCTATCCAGAGAACTTGAGGATTCATAAAGTCTACAGAGTCGTCTATAAAAATCTGTTGGAGGAGTTTGGCTCGGAGAAAATCCTCCAACAggccgtgtcgactcaggactcTTCATTTGATAGGATTCTTGTCAAGTCTTTGAGTGAAGCGCTTCTCCACAGATGTAATGAGGCATTGAGGGCAGCCTCAAGAACATCAGTCAAAACCACTGGGCCTAAGGCTCTTCCACTGGCTGAGGATGTGAGGGCTAGCAGCGGGAAACTATCTTTTCTACAAAGGCTGGTCAGGCTGACAAGCAACTTAAAGGTACAGCAAACGTATTTAAATGAACAGTTGTGGGAGATAATGTGAGTAAACAATGCTATTCAGTGTAAAAATATAAAACCATCCGTTCATTCCAAAACCAATCATAAatgttgttgtgctggtgtggTAGTTGTGATTGTTATCATCATGAGGTTGGTCAgctgtgacattttttaaaacatgtttttctctttAAATACTTAGCTATTCAAGAAGGGGAACAAGAAGGATTCCCACCGCTCTGAATCAGAACAAGTACAGACCACTGCTGAAGATGGCATGCtgCCCAGCATAGTGCCACATGCTGCCATGTCTGCACTGCCAAAGGATCTCCCCGCCAGCTCCCAACAGGAGACGCCTCACAAACGTCCACTTCTCGTCAGGATGTTTTCTGCCATCTCCAAAGGCCTGTTCAAGCCCTTCAAACAGTCCTTAAAGACCAAgtgcatcctgtttccattgatcatccttgagatgtttctacaacttgtttggagtcctgtggtaaattcaattgattggacatgatttggacagAAACACAGACCTGGGGGAAGggtatgagaaacaatattctctgatctgatgataccgagattgaactctttggcctgaatcagGATcctgggaaagatgaacggagcaaagtacagagatccttgatgaaaacctgctcca
>XM_036980312.1
TCTGTGCATTCTGATGCAGAAAGTAGAGGATCCTCTCCAACTGAATCTCTCCAAACATCTGAAACCACTATATCTGATGTAGGCAATCTATTGAGTGGCAAGTCCTCCCCTCGGCTGTCTCCTTCTGGCACCATTATGGCAACAAGCGAGACCTCCAATGCAGCACAAATCTTGAAGGCCAACATTGATGGAGAGGAAGTGGATACCACCAGTCATTCTGGTGTAGCTCAAAACATTGTCAGGGACGATATGTCAACCAGCCCAGACATGGTCAAAGATGTCACACTTCCAACCCCATCCTCTGATAACTTGGGCAGTGATGATGACGTCACcggcctcatcagcatgttagtAATGAGAATTCTAACAGAAATCCAAACCCCAGCAGAAGATTACCCAGTTGACGCCACACGCAAGTCACAAGACCTGATCCCTAAAGTTATGGAGGTcttctgtgcatggtcaggctgctctgagacaCAAGCCTATCCAGAGAACTTGAGGATTCATAAAGTCTACAGAGTCGTCTATAAAAATCTGTTGGAGGAGTTTGGCTCGGAGAAAATCCTCCAACAggccgtgtcgactcaggactcTTCATTTGATAGGATTCTTGTCAAGTCTTTGAGTGAAGCGCTTCTCCACAGATGTAATGAGGCATTGAGGGCAGCCTCAAGAACATCAGTCAAAACCACTGGGCCTAAGGCTCTTCCACTGGCTGAGGATGTGAGGGCTAGCAGCGGGAAACTATCTTTTCTACAAAGGCTGGTCAGGCTGACAAGCAACTTAAAGCTATTCAAGAAGGGGAACAAGAAGGATTCCCACCGCTCTGAATCAGAACAAGTACAGACCACTGCTGAAGATGGCATGCtgCCCAGCATAGTGCCACATGCTGCCATGTCTGCACTGCCAAAGGATCTCCCCGCCAGCTCCCAACAGGAGACGCCTCACAAACGTCCACTTCTCGTCAGGATGTTTTCTGCCATCTCCAAAGGCCTGTTCAAGCCCTTCAAACAGTCCTTAAAGACCAAgtgcatcctgtttccattgatcatccttgagatgtttctacaacttgtttggagtcctgtggtaaattcaattgattggacatgatttggacagAAACACAGACCTGGGGGAAGggtatgagaaacaatattctctgatctgatgataccgagattgaactctttggcctgaatcagGATcctgggaaagatgaacggagcaaagtacagagatccttgatgaaaacc

Function

NR:

description
uncharacterized protein LOC110512141 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052135.1 False 3707 mRNA 0.44 5 48272553 48277542
XM_036980312.1 True 1259 mRNA 0.47 4 48275120 48277535

Neighbor

gene id symbol gene type direction distance location
LOC118964885 LOC106585521 coding upstream 22604 48244976 ~ 48249949 (+)
LOC118964888 LOC106585521 coding upstream 36558 47725631 ~ 48235995 (+)
LOC118964887 LOC106585521 coding upstream 232756 48037087 ~ 48039797 (+)
LOC110512140 LOC106585521 coding upstream 269124 47997906 ~ 48003429 (+)
LOC118964889 LOC106585521 coding upstream 316872 47953718 ~ 47955681 (+)
LOC110512253 LOC106585521 coding downstream 22178 48299720 ~ 48302420 (+)
LOC118936658 LOC106585521 coding downstream 50326 48327868 ~ 48331446 (+)
LOC110526080 LOC106585521 coding downstream 77071 48354613 ~ 48393007 (+)
LOC110514397 LOC106585521 coding downstream 80007 48357549 ~ 48358334 (+)
LOC118964893 LOC106585521 coding downstream 81311 48358853 ~ 48360349 (+)
G515061 NA non-coding upstream 549709 47722434 ~ 47722844 (+)
G515057 NA non-coding upstream 555685 47716038 ~ 47716868 (+)
G515056 NA non-coding upstream 563194 47709155 ~ 47709359 (+)
G515051 NA non-coding upstream 566668 47705511 ~ 47705885 (+)
LOC118964879 LOC106585521 non-coding upstream 599956 47671331 ~ 47675493 (+)
G515127 LOC106585477 non-coding downstream 12669 48290211 ~ 48290564 (+)
G515132 NA non-coding downstream 37718 48315260 ~ 48315527 (+)
G515135 LOC106585477 non-coding downstream 40188 48317730 ~ 48318344 (+)
G515137 LOC106585477 non-coding downstream 41345 48318887 ~ 48319224 (+)
G515153 NA non-coding downstream 54125 48331667 ~ 48331992 (+)
G515069 NA other upstream 320299 47950006 ~ 47952254 (+)
LOC118964881 LOC106585521 other upstream 755843 47425001 ~ 47519480 (+)
G514662 LOC106597055 other upstream 943309 47303183 ~ 47329244 (+)
G514665 NA other upstream 952503 47306438 ~ 47320050 (+)
G514499 NA other upstream 1249461 47022294 ~ 47023092 (+)
G515189 LOC100135962 other downstream 274077 48532377 ~ 48587888 (+)
LOC110526072 LOC106587002 other downstream 671075 48948617 ~ 49037542 (+)
edf1 edf1 other downstream 906331 49183291 ~ 49187334 (+)
LOC110526066 LOC106584148 other downstream 956037 49233579 ~ 49260632 (+)
G516011 NA other downstream 1027583 49305125 ~ 49307140 (+)

Expression


Co-expression Network