LOC110512142 (LOC106585477)


Basic Information

Item Value
gene id LOC110512142
gene name LOC106585477
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 48292846 ~ 48318495 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980314.1
CTTATCATCTAGCTCACCATCAGAGATCCATGTCCTTTCAGAATCCATGTCCTCCATGTCCTCTGAGAATACAGCCTCTGGATTAGTGGAAACCTTTGTCAAAGGAATGGCGACTATTTTCCAGAAAAATGAGTCCACTGACACTGTGCTACTGGAAAGAAGTGGGAGAGTTTCACAGTGCTCCCACGGGGGCTCCCAACTGGATGATACTGAATTGAGTGTTAAAATATCAGAGGAGAAGCTTTGGTCAACAGCTAAGAACATCTGCGTCAGTATGAAGAACACACTTAAGGATTTCTTCACAGGGCTGAAGCCATCCGGATCCGAAAGGACAGAAATCGCTTCTTCCAAAGAGACCCTTGGGGAAATCCTGGTTGCTATCCAGAGTGAAATCTCAAACTTCGGGCGAATGAAGGATTCCAGGGAGCTCCTTCAGATCAATGATATGGTAGGAACTATGCTGAAGGAGAttgagaaaagtgaggatgacAGTGAACAAGTCTGCCAAGACATCCCTAGAACCTGTTCATCTTTATCCACTTCTTTAAATGGTCGTAGTTCCTTGTCCAGCTCTTCAAAGGGTCCTAGGTCAGAGTGTGAGTTAGAGATCaacctccctggcactcccatcccTGACGAAGTGCCTTTTGATCTGACCTGCCCCATCGTCAGGAGCTCCTGCATCGACACCAGGGACTCTAAAATGCCAGAGATTTCTACAAGTGACCTAAAGACAAAGATGATGGCACACACAGATGAACCCCTGCATCGTAACAGTCCAATGACTGACAGCAGCCGACCACCTAGTGCTAAAGTCTCTTTTCGATCCTCCACTCCGTCTTTCACCAGCAAGGGAACCTCTTTGGTACCAAAGGGAGAGGGGATTGACATTGAAGAGAAGGAGGTGTGTATCCCCAGCAGCTCTGGCCATCTGAGGGAGCTCTTAATCATCCCGGACATCAGCAGTGCCACTgcattcccactgcagtacttgatggactccagcaaagatgatgccatctgttttgtcaccatggTGATAAGGTTTCTATCGAAGATCAGACCTTCAGCCCTAGATGGACCCTCCCAACAGGCAGCAGATCTGACCGAAACATCTCAGCAACTCATCAGACAagtcctgtctgagttctgtgctgCATCCAGATTATCCAGGACACAGGCATATTCCCAGAACCTGAACATCCAAAGGGTGTTCAGAGGTGTACATAAAAACCTCATGGAGGAGTTTGGCTCTTATAACACCCTGCAAGCAGCTATGTCCTCCCAGGACCCTTCATTTGACAGAGTTCTGGTAAAGtccttgacccagcagctggtacagggatgcaaggaggcgtcaagaccagcttctgctgcaacaaacccatcagaccaggctgagacagagaggggggctgagcagaAAGCAAGAAGGAGCTTCCTTTGCCTTTGAATGATCAAACTCAGGATCAACTTCAAGGTATAGCAGGGAGTTAGCATTTGTTTTTTGTTCCAGTtaggtgctgatgttattgatgtggctatgataagacaaatacattaaataaatgttttattcat
>TU584340
gttttattcatcactaaattgttgccttggattcagaagtgttccatttatttattctctgtacCATTTTCTTTACCTTTCATCTGTTAGCGTTCCAAGAGAGCAAACAAAAAGGACTGTCATTCAGTCCAGGAACAGACTGAGATTCCCTCTACTGATGGACATTGCATAGAGCGTGAAATGGGAGGATCCCCCGGATGACCAAAATAAGGTTGTGGAGAATATGAAGGATGAAACAGAGACACATGAGACCTGCAAAGACAGGACAAGAGGCAAGGCTAAACGTAAGTCCAGTGGCGGTGCCAAGAAGACTTccgtggaggaggacagcagcattGGTGCAGAGTCTTCTCAGACACCCGGGTGTGGTTTCCGGGAAAGGGGATCTATCATTgagcagctggagaagg
>TU584341
CCACCAGAGCGTGAAATGGGAGGATCCCCCGGATGACCAAAATAAGGTTGTGGAGAATATGAAGGATGAAACAGAGACACATGAGACCTGCAAAGACAGGACAAGAGGCAAGGCTAAACGTAAGTCCAGTGGCGGTGCCAAGAAGACTTccgtggaggaggacagcagcattGGTGCAGAGTCTTCTCAGACACCCGGGTGTGGTTTCCGGGAAAGGGGATCTATCATTgagcagctggagaagg
>TU584348
GAAACCTTTGTCAAAGGAATGGCGACTATTTTCCAGAAAAATGAGTCCACTGACACTGTGCTACTGGAAAGAAGTGGGAGAGTTTCACAGTGCTCCCACGGGGGCTCCCAACTGGATGATACTGAATTGAGTGTTAAAATATCAGAGGAGAAGCTTTGGTCAACAGCTAAGAACATCTGCGTCAGTATGAAGAACACACTTAAGGATTTCTTCACAGGGCTGAAGCCATCCGGATCCGAAAGGACAGAAATCGCTTCTTCCAAAGAGACCCTTGGGGAAATCCTGGTTGCTATCCAGAGTGAAATCTCAAACTTCGGGCGAATGAAGGATTCCAGGGAGCTCCTTCAGATCAATGATATGGTAGGAACTATGCTGAAGGAGAttgagaaaagtgaggatgacAGTGAACAAGTCTGCCAAGACATCCCTAGAACCTGTTCATCTTTATCCACTTCTTTAAATGGTCGTAGTTCCTTGTCCAGCTCTTCAAAGGGTCCTAGGTCAGAGTGTGAGTTAGAGATCaacctccctggcactcccatcccTGACGAAGTGCCTTTTGATCTGACCTGCCCCATCGTCAGGAGCTCCTGCATCGACACCAGGGACTCTAAAATGCCAGAGATTTCTACAAGTGACCTAAAGACAAAGATGATGGCACACACAGATGAACCCCTGCATCGTAACAGTCCAATGACTGACAGCAGCCGACCACCTAGTGCTAAAGTCTCTTTTCGATCCTCCACTCCGTCTTTCACCA

Function

NR:

description
uncharacterized protein LOC110512252

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980314.1 False 1581 mRNA 0.47 2 48297517 48318495
TU584340 False 410 TUCP 0.46 4 48292846 48297527
TU584341 False 245 TUCP 0.53 3 48292846 48293454
TU584348 True 760 TUCP 0.47 1 48317648 48318407

Neighbor

gene id symbol gene type direction distance location
LOC118965031 LOC106585477 coding downstream 279663 48016304 ~ 48017854 (-)
LOC110511762 NA coding downstream 311866 47943033 ~ 47985651 (-)
LOC110513487 LOC106585477 coding downstream 321869 47948315 ~ 47975648 (-)
LOC118964890 NA coding downstream 363200 47933538 ~ 47934317 (-)
LOC118964882 NA coding downstream 608265 47688651 ~ 47689252 (-)
LOC118965032 LOC106585477 coding upstream 28369 48346864 ~ 48348019 (-)
LOC118964894 NA coding upstream 30214 48348709 ~ 48353264 (-)
LOC118964892 LOC106585477 coding upstream 59890 48375946 ~ 48387076 (-)
rab14 LOC106587009 coding upstream 217190 48535685 ~ 48540886 (-)
c5 c5 coding upstream 233125 48551620 ~ 48625435 (-)
G515128 LOC106585477 non-coding downstream 6831 48290169 ~ 48290686 (-)
G515121 NA non-coding downstream 11139 48258331 ~ 48286378 (-)
G515123 NA non-coding downstream 31409 48265170 ~ 48266108 (-)
G515104 NA non-coding downstream 300451 47996809 ~ 47997066 (-)
G515103 NA non-coding downstream 302710 47994489 ~ 47994807 (-)
G515141 NA non-coding upstream 2558 48321053 ~ 48321460 (-)
G515144 NA non-coding upstream 6057 48324552 ~ 48324889 (-)
G515145 NA non-coding upstream 6966 48325461 ~ 48326114 (-)
G515507 cntrl non-coding upstream 94807 48413302 ~ 48420975 (-)
G515583 cntrl non-coding upstream 170179 48488674 ~ 48490587 (-)
G515122 LOC106585477 other downstream 32540 48263993 ~ 48264977 (-)
G515094 LOC106585477 other downstream 320542 47974793 ~ 47976975 (-)
G514777 NA other downstream 1281021 47016162 ~ 47016496 (-)
G514434 NA other downstream 1386567 46910658 ~ 46910950 (-)
LOC110526044 LOC107699739 other downstream 1867157 46367701 ~ 46430607 (-)
G515139 LOC106585477 other upstream 1252 48319747 ~ 48320588 (-)
prdm12b LOC106587007 other upstream 308543 48625747 ~ 48630388 (-)
LOC110512258 LOC106585521 other upstream 998549 49316279 ~ 49320412 (-)
LOC110512256 LOC106585521 other upstream 1028975 49346858 ~ 49349193 (-)

Expression


Co-expression Network