LOC110512253 (LOC106585521)


Basic Information

Item Value
gene id LOC110512253
gene name LOC106585521
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 48299720 ~ 48302420 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052140.1
acactctcGTTCGCTTCTTCCTACAAATCTAAAATCATTGCattggtggaggcatgggctagagaggaatatgctaccaaatagcaccttattccctaatgtaggcctacttttaaggaatgcactataaggaatagatcaATCAACTGGCTCACTAAATGGGGTACCGAAATATATCCAAAAGAGGTCGACACGAAATTAGACTAGGTTTATTTCTGTTTTGACCTGCTGAGTCGCAGTGCTTAGTGAACAGATTTCAATGTGGGCCTAGCTGTATCGAAAACGGTTGATGGGGAAAGTGTGTAATCTGATCAATATATTTCCCCCCCAATATTAATGAGAGAATGGGAATGTGCATAAAGGTCTAACATTCCATGACGTGGTATGAAGTTCTTAAttcgtcagtggctgcaatattgTCCTCAGTAAACTCAACATGAGTGAAAACAACACAGACAAGGACAAGTTTTTCGAGATATAAAAAATACTGTATGCTATTATGGATGAAGAAAAGGTAGGTTAAATGACACGAAATATTTGGGAATGTAACTAAGGAAAACGTCATTTAAGATAACATAGGCTATTGCAAAACAAATGTCTAATTCTCTCTATTAAGTCAATCACCAGTTTAGCTctgatatggctgtagctctatGATGTCCTTTGCAAGAATCTAATCTGACATTGACATGAAATTCCTATGTCCTTCAGGTAGtacagagagatgatgatgatcccCAGAGGGAGTTGAGGGGGGTTGTTGAGGAAGAACCAGTGGCCCAGCTCAAGAAGGAGCCCAAGAAGACAGGAAAGGTGAAGAGGAAAAGTAGTGCCAAGAAGTCAGGGGAGCAGGGCACTGATACGGATGCAGGATTGAGGAATAAACACCCGGACAGAGGATCTGTTATTGAGCTCTTGGAGAAGAATGCTCTTAAGGCTGCATTCGGCCCAGGCAACAAAGATGAGATGGAGGACTGctacccaatcctcatctcattcatgcgcaatcttactgatgaGCAATGGCAAGTGATCTATAAAGGATTTAAAAAACCTATGACAAAGGAACAGCTTGCAAAATTGTGCAAGACCATTGTCAACTTCATTGCACAGACCACCCTGCAGATCCTGCTGCCGGCCCTGGCCCGCATTCTAGGGGTGACGGGCTTTTATGACAACGCTGACTCACTCAAGAGGGGTGGCAGTGCAAGATCCTTCACTGCCTTTGAGCAGAAAAGActggagctcatccaggaagttaAATATTTGGCGAAGTAACTGTGGCGGCAGGGCTCTCCGACCAAGGTCTAGCACACCCTCTTCcaagagacctcaCTGAAAGTCCACCTGGGAATGCCAGaggacagtatcatcagcagtgtccaggagcaactgtcaaaatctgaccaaaTGGTGGCTGCAGGACAGCTTTCACAAATAGATAAAGTGGTTGGAACTATGCTGGAGAACATTGAGAAGATAAGCAGCGAATGTGGCGAGGAATTGGTCTATCAAGAGTCACTGCGGtcttcctcctcgttgtcattctcaactgccaaatcacagaagacagagtgggaatttgcactccctggcactcccattcCTTCTGAGTTACCCGAGAGTACTGCTCAGCCCATTGTAAGATGTTCAGTCATTGACATGAGCGAATCTACTAAGCCAAAAACAATGGTGTGTGATGCCAGAACAAGCATGTTTG
>XR_005052138.1
tctcGTTCGCTTCTTCCTACAAATCTAAAATCATTGCattggtggaggcatgggctagagaggaatatgctaccaaatagcaccttattccctaatgtaggcctacttttaaggaatgcactataaggaatagatcaATCAACTGGCTCACTAAATGGGGTACCGAAATATATCCAAAAGAGGTCGACACGAAATTAGACTAGGTTTATTTCTGTTTTGACCTGCTGAGTCGCAGTGCTTAGTGAACAGATTTCAATGTGGGCCTAGCTGTATCGAAAACGGTTGATGGGGAAAGTGTGTAATCTGATCAATATATTTCCCCCCCAATATTAATGAGAGAATGGGAATGTGCATAAAGGTCTAACATTCCATGACGTGGTATGAAGTTCTTAAttcgtcagtggctgcaatattgTCCTCAGTAAACTCAACATGAGTGAAAACAACACAGACAAGGACAAGTTTTTCGAGATATAAAAAATACTGTATGCTATTATGGATGAAGAAAAGGTAGGTTAAATGACACGAAATATTTGGGAATGTAACTAAGGAAAACGTCATTTAAGATAACATAGGCTATTGCAAAACAAATGTCTAATTCTCTCTATTAAGTCAATCACCAGTTTAGCTctgatatggctgtagctctatGATGTCCTTTGCAAGAATCTAATCTGACATTGACATGAAATTCCTATGTCCTTCAGGTAGtacagagagatgatgatgatcccCAGAGGGAGTTGAGGGGGGTTGTTGAGGAAGAACCAGTGGCCCAGCTCAAGAAGGAGCCCAAGAAGACAGGAAAGGTGAAGAGGAAAAGTAGTGCCAAGAAGTCAGGGGAGCAGGGCACTGATACGGATGCAGGATTGAGGAATAAACACCCGGACAGAGGATCTGTTATTGAGCTCTTGGAGAAGAATGCTCTTAAGGCTGCATTCGGCCCAGGCAACAAAGATGAGATGGAGGACTGctacccaatcctcatctcattcatgcgcaatcttactgatgaGCAATGGCAAGTGATCTATAAAGGATTTAAAAAACCTATGACAAAGGAACAGCTTGCAAAATTGTGCAAGACCATTGTCAACTTCATTGCACAGACCACCCTGCAGATCCTGCTGCCGGCCCTGGCCCGCATTCTAGGGGTGACGGGCTTTTATGACAACGCTGACTCACTCAAGAGGGGTGGCAGTGCAAGATCCTTCACTGCCTTTGAGCAGAAAAGActggagctcatccaggaagttaAATATTTGGCGAAGTAACTGTGGCGGCAGGGCTCTCCGACCAAGGTCTAGCACACCCTCTTCcaagagttcccagacctcaCTGAAAGTCCACCTGGGAATGCCAGaggacagtatcatcagcagtgtccaggagcaactgtcaaaatctgaccaaaTGGTGGCTGCAGGACAGCTTTCACAAATAGATAAAGTGGTTGGAACTATGCTGGAGAACATTGAGAAGATAAGCAGCGAATGTGGCGAGGAATTGGTCTATCAAGAGTCACTGCGGtcttcctcctcgttgtcattctcaactgccaaatcacagaagacagagtgggaatttgcactccctggcactcccattcCTTCTGAGTTACCCGAGAGTACTGCTCAGCCCATTGTAAGATGTTCAGTCATTGACATGAGCGAATCTACTAAGCCAAAAACAATGGTGTGTGATGCCAGAACAAGCATGTTTG
>XR_005052139.1
TGTTGAGGAAGAACCAGTGGCCCAGCTCAAGAAGGAGCCCAAGAAGACAGGAAAGGATTGAGGAATAAACACCCGGACAGAGGATCTGTTATTGAGCTCTTGGAGAAGAATGCTCTTAAGGCTGCATTCGGCCCAGGCAACAAAGATGAGATGGAGGACTGctacccaatcctcatctcattcatgcgcaatcttactgatgaGCAATGGCAAGTGATCTATAAAGGATTTAAAAAACCTATGACAAAGGAACAGCTTGCAAAATTGTGCAAGACCATTGTCAACTTCATTGCACAGACCACCCTGCAGATCCTGCTGCCGGCCCTGGCCCGCATTCTAGGGGTGACGGGCTTTTATGACAACGCTGACTCACTCAAGAGGGGTGGCAGTGCAAGATCCTTCACTGCCTTTGAGCAGAAAAGActggagctcatccaggaagttaAATATTTGGCGAAGTAACTGTGGCGGCAGGGCTCTCCGACCAAGGTCTAGCACACCCTCTTCcaagagttcccagacctcaCTGAAAGTCCACCTGGGAATGCCAGaggacagtatcatcagcagtgtccaggagcaactgtcaaaatctgaccaaaTGGTGGCTGCAGGACAGCTTTCACAAATAGATAAAGTGGTTGGAACTATGCTGGAGAACATTGAGAAGATAAGCAGCGAATGTGGCGAGGAATTGGTCTATCAAGAGTCACTGCGGtcttcctcctcgttgtcattctcaactgccaaatcacagaagacagagtgggaatttgcactccctggcactcccattcCTTCTGAGTTACCCGAGAGTACTGCTCAGCCCATTGTAAGATGTTCAGTCATTGACATGAGCGAATCTACTAAGCCAAAAACAATGGTGTGTGATGCCAGAACAAGCATGTTTG

Function

NR:

description
uncharacterized protein LOC110526909

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052140.1 False 1720 mRNA 0.44 6 48299720 48302420
XR_005052138.1 False 1723 mRNA 0.44 6 48299724 48302420
XR_005052139.1 True 911 mRNA 0.48 5 48300478 48302420

Neighbor

gene id symbol gene type direction distance location
LOC118964891 LOC106585521 coding upstream 22178 48272553 ~ 48277542 (+)
LOC118964885 LOC106585521 coding upstream 49771 48244976 ~ 48249949 (+)
LOC118964888 LOC106585521 coding upstream 63725 47725631 ~ 48235995 (+)
LOC118936658 LOC106585521 coding downstream 25448 48327868 ~ 48331446 (+)
LOC110526080 LOC106585521 coding downstream 52193 48354613 ~ 48393007 (+)
LOC110514397 LOC106585521 coding downstream 55129 48357549 ~ 48358334 (+)
LOC118964893 LOC106585521 coding downstream 56433 48358853 ~ 48360349 (+)
cntrl cntrl coding downstream 117353 48419773 ~ 48528758 (+)
G515127 LOC106585477 non-coding upstream 9156 48290211 ~ 48290564 (+)
G515061 NA non-coding upstream 576876 47722434 ~ 47722844 (+)
G515057 NA non-coding upstream 582852 47716038 ~ 47716868 (+)
G515056 NA non-coding upstream 590361 47709155 ~ 47709359 (+)
G515051 NA non-coding upstream 593835 47705511 ~ 47705885 (+)
G515132 NA non-coding downstream 12840 48315260 ~ 48315527 (+)
G515135 LOC106585477 non-coding downstream 15310 48317730 ~ 48318344 (+)
G515137 LOC106585477 non-coding downstream 16467 48318887 ~ 48319224 (+)
G515153 NA non-coding downstream 29247 48331667 ~ 48331992 (+)
G515189 LOC100135962 non-coding downstream 229957 48532377 ~ 48587888 (+)
G515069 NA other upstream 347466 47950006 ~ 47952254 (+)
LOC118964881 LOC106585521 other upstream 783010 47425001 ~ 47519480 (+)
G514662 LOC106597055 other upstream 970476 47303183 ~ 47329244 (+)
G514665 NA other upstream 979670 47306438 ~ 47320050 (+)
G514499 NA other upstream 1276628 47022294 ~ 47023092 (+)
LOC110526072 LOC106587002 other downstream 646197 48948617 ~ 49037542 (+)
edf1 edf1 other downstream 881453 49183291 ~ 49187334 (+)
LOC110526066 LOC106584148 other downstream 931159 49233579 ~ 49260632 (+)
G516011 NA other downstream 1002705 49305125 ~ 49307140 (+)

Expression


Co-expression Network