LOC118936658 (LOC106585521)


Basic Information

Item Value
gene id LOC118936658
gene name LOC106585521
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 48327868 ~ 48331446 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052136.1
ATAAAGGTCATGTTAGAAACTGGAGTCAGTAAGAAATGTTGCATGGATAGTTTTATTCAATAGTCCTATTGTAGCAATTTTATCAAAGTATTGTATTAAGAGAAAAGCGTCTGACTTATCCTGAATTGTCCTATATGGTAATAACATATTTAGGATTGAGGAATAAACACCCGGACAGAGGATCTGTTATTGAGCTCTTGGAGAAGAATGCTCTTAAGGCTGCATTCGGCCCAGGCAACAAAGATGAGATGGAGGACTGctacccaatcctcatctcattcatgcgcaatcttactgatgaGCAATGGCAAGTGATCTATAAAGGATTTAAAAACCTGTAAGTTTCTCCATCAGCCTTTGACCTTTGATTTGGGAATGTTATGTTGAATCGAGAGAGGAATTAACCATAGTTCTATTCTGCTATTACGTTCATTAATCTGTCATACTTCATCCAactttgaattcagtcacagaTAAGGAAAACGATGTTGGTGAAATGCATTCTGTTCAatctagaatactttacatcaGAGTTTCATTGCCaaacctgctgtgttctgttttgtttgtgCAATGCAGATGACAAAGGAACAGCTTGCAAAATTGTGCAAGACCATTGTCAACTTCATTGCACAGACCACCCTGCAGATCCTGCTGCCGGCCCTGGCCCGCATTCTAGGGGTGACGGGCTTTTATGACAACGCTGACTCACTCAAGAGGGGTGGCAGTGCAAGATCCTTCACTGCCTTTGAGCAGAAAAGActggagctcatccaggaagttaAATATTTGGCGAAGTAACTGTGGCGGCAGGGCTCTCCGACCAAGGTCTAGCACACCCTCTTCcaagaggtactgtatgttccccataatgtgtgtgtgtgtgtgtgtgcagttattCCTAACCCTCAAACTGATGAACAATAATTTCCCCATTTCAATATTTTCCAGCTTTCTAACAGGTGTGTTTTGCAATATCTAATGCACACatataaattacatttagaatacTCAATTATAATGCTTGTTAGATTTGTTAGTACTAAGATATCGATTTTCCAACTTCAGACAGCAATTAACATGCTttgcttgttcattttaaagttcCCAGAACTCACTGAAAGTCCACCTGGGAATGCCAGaggacagtatcatcagcagtgtccaggagcaactgtcaaaatctgaccaaaTGGTGGCTGCAGGACAGCTTTCACAAATAGATAAAGTGGTTGGAACTATGCTGGAGAACATTGAGAAGATAAGCAGCGAATGTGGCGAGGAATTGGTCTATCAAGAGTCACTGCGGtcttcctcctcgttgtcatTCTCAACTGCCAAATCACAGAAGACAGAGTGGGAATTTGCACTCCCATTCCTTCTGAGTTACCCGAGAGTACTGCTCAGCCCATTGTAAGATGCTCAGTCATTGACATGAGCGAATCTACTAAGCCAAAAACAATGGTGTGTGATGCCAGAACAAGCATGTTTGCCATAGCCGATACCATCATGAAGAAGGTATATCCAGAGGCAGAAGGGCAGGTTACATCTCACCCTGATCTAACAGATCCAATAGCTAGACTGGAGGAGCTCATATCTCAGGgtaggattggtgctctctcCCGTGATCTCAGTCACCAAGTGAACCGCATAATTTCCGATagcaacttgacccctctgggactgacagtggcggctggaaagagtgcatctgataccatcctttcgaagctgaagaggaatgacaaggTGGGGAAGCCCACAACTTACGAGCTGGTTCAGCTGTTTGTAGAGGAGTCTGTTAAGTGCCTCCTGCTTCCTAGTTTTGTGCCCTATTCAActtcaatgagtttggctcagggGGCCAAGGTGTTGGCTAGAGTGTCTGAAGATAGAATTTcatgctcttcttcttcttcatcagtaTTTAGTGACAGTCAGTCTCTTTACCAAAGTTATGGTAAGCCAGGTCATGTACTCTGTGGATTCTGATGCAGAAAGTAGAGGATCCTCTCCAACTGAATCTCTCCAAACATCTGAACCCACTATATCTGATGTAGGCAATCTATTGAGTGGCAAGTCCTCCCCTCGGCTGTCTCCTTCTTGCACCATTATGGCAAAAAGCGAGACCTCCAATGCAGCACAAATCTTGAAGGCCAACATTGATGGAGAGGAAGTGGATACCACCAGTCATTCTGGTGTAGCTCAAAACATTGTCAGGGACGATATGTCAACCAGCCCAGACATGGTCAAAGATGTCACACTTCCAACCCCATCCTCTGATAACTTGGGCAGTGATGATGACGTCACcggcctcatcagcatgttagtAATGAGAATTCTAACAGAAATCCAAACCCCAGCAGAAGATTACCCAGTTGACGTCACACGCAAGTCACAAGACCTGATCCCTAAAGTTATGGAGGTcttctgtgcatggtcaggctgctctgagacaCAAGCCTATCCAGAGAACTTGAGGATTCATAAAGTCTACAGAGTCGTCTATAAAAATCTGTTGGAGGAGTTTGGCTCTGAGAAAATCCTCCAACAggccgtgtcgactcaggactcTTCATTTGATAGGATTCTTGTCAAGTCTTTGAGTGAAGCGCTTCTCCACAGATGTAATGAGGCATTGAGGGCAGCCTCAAGAACATCAGTCAAAACCACCGGGCCTAAGGCTCTTCCACTGGCTGAGGATGTGAGGGCTAGCAGCGGGAAACTATCTTTTCTACAAAGGCTGGTCAGGCTGACAAGCAACTTAAAGGTACAGCAAACGTATTTAAATGAACAGTTGTGAGTAAACAATGCTATTCAGTGTAAAAATATAAAACCATCCGTTCATTCCAAAACCAATCATAAatgttgttgtgctggtgtggTAGGTGTGATTGTTATCATCATGAGGTTGGTCAgctgtgacattttttaaaacatgtttttctctttAAATACTTAGCTATTCAAGAAGGGGAACAAGAAGGATTCCCACCGCTCTGAATCAGAACAAGTACAGACCACTGCTGAAGATGGCATGCtGCCCAGCATAGTGCCACATGCTGCCATGTCTGCACTGCCAAAGGATCTCCCCGCCAGCTCCCAACAGGAGACGCCTCACAAACGTCCACTTCTCGTCAGGATGTTTTCTGCCATCTCCAAAGGCCTGTTCAAGCCCTTCAAACAGTCCTTAAAGACCAAGTAACTTCAGACAATTTATTAAACGTCATTCATTGCATTAAA
>XM_036980315.1
attttaaagttcCCAGAACTCACTGAAAGTCCACCTGGGAATGCCAGaggacagtatcatcagcagtgtccaggagcaactgtcaaaatctgaccaaaTGGTGGCTGCAGGACAGCTTTCACAAATAGATAAAGTGGTTGGAACTATGCTGGAGAACATTGAGAAGATAAGCAGCGAATGTGGCGAGGAATTGGTCTATCAAGAGTCACTGCGGtcttcctcctcgttgtcatTCTCAACTGCCAAATCACAGAAGACAGAGTGGGAATTTGCACTCCCATTCCTTCTGAGTTACCCGAGAGTACTGCTCAGCCCATTGTAAGATGCTCAGTCATTGACATGAGCGAATCTACTAAGCCAAAAACAATGGTGTGTGATGCCAGAACAAGCATGTTTGCCATAGCCGATACCATCATGAAGAAGGTATATCCAGAGGCAGAAGGGCAGGTTACATCTCACCCTGATCTAACAGATCCAATAGCTAGACTGGAGGAGCTCATATCTCAGGgtaggattggtgctctctcCCGTGATCTCAGTCACCAAGTGAACCGCATAATTTCCGATagcaacttgacccctctgggactgacagtggcggctggaaagagtgcatctgataccatcctttcgaagctgaagaggaatgacaaggTGGGGAAGCCCACAACTTACGAGCTGGTTCAGCTGTTTGTAGAGGAGTCTGTTAAGTGCCTCCTGCTTCCTAGTTTTGTGCCCTATTCAActtcaatgagtttggctcagggGGCCAAGGTGTTGGCTAGAGTGTCTGAAGATAGAATTTcatgctcttcttcttcttcatcagtaTTTAGTGACAGTCAGTCTCTTTACCAAAGTTATGGTAAGCCAGGTCATGTACTCTGTGGATTCTGATGCAGAAAGTAGAGGATCCTCTCCAACTGAATCTCTCCAAACATCTGAACCCACTATATCTGATGTAGGCAATCTATTGAGTGGCAAGTCCTCCCCTCGGCTGTCTCCTTCTTGCACCATTATGGCAAAAAGCGAGACCTCCAATGCAGCACAAATCTTGAAGGCCAACATTGATGGAGAGGAAGTGGATACCACCAGTCATTCTGGTGTAGCTCAAAACATTGTCAGGGACGATATGTCAACCAGCCCAGACATGGTCAAAGATGTCACACTTCCAACCCCATCCTCTGATAACTTGGGCAGTGATGATGACGTCACcggcctcatcagcatgttagtAATGAGAATTCTAACAGAAATCCAAACCCCAGCAGAAGATTACCCAGTTGACGTCACACGCAAGTCACAAGACCTGATCCCTAAAGTTATGGAGGTcttctgtgcatggtcaggctgctctgagacaCAAGCCTATCCAGAGAACTTGAGGATTCATAAAGTCTACAGAGTCGTCTATAAAAATCTGTTGGAGGAGTTTGGCTCTGAGAAAATCCTCCAACAggccgtgtcgactcaggactcTTCATTTGATAGGATTCTTGTCAAGTCTTTGAGTGAAGCGCTTCTCCACAGATGTAATGAGGCATTGAGGGCAGCCTCAAGAACATCAGTCAAAACCACCGGGCCTAAGGCTCTTCCACTGGCTGAGGATGTGAGGGCTAGCAGCGGGAAACTATCTTTTCTACAAAGGCTGGTCAGGCTGACAAGCAACTTAAAGCTATTCAAGAAGGGGAACAAGAAGGATTCCCACCGCTCTGAATCAGAACAAGTACAGACCACTGCTGAAGATGGCATGCtGCCCAGCATAGTGCCACATGCTGCCATGTCTGCACTGCCAAAGGATCTCCCCGCCAGCTCCCAACAGGAGACGCCTCACAAACGTCCACTTCTCGTCAGGATGTTTTCTGCCATCTCCAAAGGCCTGTTCAAGCCCTTCAAACAGTCCTTAAAGACCAAGTAACTTCAGACAATTTATTAAACGTCATTCATTGCATTAAA

Function

NR:

description
uncharacterized protein LOC110512141 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052136.1 False 3243 mRNA 0.44 3 48327868 48331446
XM_036980315.1 True 1956 mRNA 0.47 3 48329055 48331446

Neighbor

gene id symbol gene type direction distance location
LOC110512253 LOC106585521 coding upstream 25448 48299720 ~ 48302420 (+)
LOC118964891 LOC106585521 coding upstream 50326 48272553 ~ 48277542 (+)
LOC118964885 LOC106585521 coding upstream 77919 48244976 ~ 48249949 (+)
LOC118964887 LOC106585521 coding upstream 288071 48037087 ~ 48039797 (+)
LOC110512140 LOC106585521 coding upstream 324439 47997906 ~ 48003429 (+)
LOC110526080 LOC106585521 coding downstream 23167 48354613 ~ 48393007 (+)
LOC110514397 LOC106585521 coding downstream 26103 48357549 ~ 48358334 (+)
LOC118964893 LOC106585521 coding downstream 27407 48358853 ~ 48360349 (+)
cntrl cntrl coding downstream 88327 48419773 ~ 48528758 (+)
LOC110526072 LOC106587002 coding downstream 617546 48948617 ~ 49037542 (+)
G515137 LOC106585477 non-coding upstream 8644 48318887 ~ 48319224 (+)
G515135 LOC106585477 non-coding upstream 9524 48317730 ~ 48318344 (+)
G515132 NA non-coding upstream 12341 48315260 ~ 48315527 (+)
G515127 LOC106585477 non-coding upstream 37304 48290211 ~ 48290564 (+)
G515061 NA non-coding upstream 605024 47722434 ~ 47722844 (+)
G515153 NA non-coding downstream 221 48331667 ~ 48331992 (+)
G515189 LOC100135962 non-coding downstream 200931 48532377 ~ 48587888 (+)
G515190 c5 non-coding downstream 264072 48595518 ~ 48619629 (+)
G515262 NA non-coding downstream 268337 48599783 ~ 48602381 (+)
G515308 NA non-coding downstream 343438 48674884 ~ 48675558 (+)
G515069 NA other upstream 375614 47950006 ~ 47952254 (+)
LOC118964881 LOC106585521 other upstream 811158 47425001 ~ 47519480 (+)
G514662 LOC106597055 other upstream 998624 47303183 ~ 47329244 (+)
G514665 NA other upstream 1007818 47306438 ~ 47320050 (+)
G514499 NA other upstream 1304776 47022294 ~ 47023092 (+)
edf1 edf1 other downstream 852427 49183291 ~ 49187334 (+)
LOC110526066 LOC106584148 other downstream 902133 49233579 ~ 49260632 (+)
G516011 NA other downstream 973679 49305125 ~ 49307140 (+)

Expression


Co-expression Network