LOC118965032 (LOC106585477)


Basic Information

Item Value
gene id LOC118965032
gene name LOC106585477
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 48346864 ~ 48348019 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981757.1
CTCGTATCATGGGGGTGAACCTGAGGAGTGGGGCAACCTCCCCAGAATCCCAGTGCTCTCTGACAGGGTCTGAGGATTCCTTAGGCagtctggatgagagagagaaaaggctgctgatcagtgagatgaactactggactaaggagaggaggagtaatggcagtgcaggatgccgccaaaaatCCACTCGCAGAACCTCATCACCATGCTGTTCGCCTAAGAGGTCCCAGACCTCATTGCAGAGCTTGCCTGCAACTAGAGAGGCTCCCCTCATGGAGGAGCCTCTGAAGGCTCTTTTTGGGGTAACGGAAGAGAGCCTTCTGATATCCCTGGTTGAGGGTCACTCCAACcccacctcctccagctcctccgagTTGAGCTGTGCTATCGTGGGGGAGGTGGTACACCAGCTTAACTCTGGCCTCTCAGTGGCCATTCAGGCCAGCCCGGGGAGTTGCCCCCCTATGGACAGTCAGGACATAGCAGCAGGCAAGGAGGTCATTCGGGTAGCCTCGGTTCAGATCCTGGCCGAGCTACAGAGCCAAACATCTGAGCCAGAGTGGGTAGGGTTTATCGAGCCCCTCATGGACCCTGTGACCGATGATGTGCTGGAGGCCATTGTCGGCACAATGGACAAAATGGCACAGGACTTCAACATCCTATTGGATCTGGCCAAGAAGATGACAATCTTGGGGTCTAAATTTCTGACCAATCTTCAATGTGATCTAGATGTTGAGTGTCCATCTTGA

Function

NR:

description
uncharacterized protein LOC110525362

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981757.1 True 749 mRNA 0.54 2 48346864 48348019

Neighbor

gene id symbol gene type direction distance location
LOC110512142 LOC106585477 coding downstream 28369 48292846 ~ 48318495 (-)
LOC118965031 LOC106585477 coding downstream 329010 48016304 ~ 48017854 (-)
LOC110511762 NA coding downstream 361213 47943033 ~ 47985651 (-)
LOC110513487 LOC106585477 coding downstream 371216 47948315 ~ 47975648 (-)
LOC118964890 NA coding downstream 412547 47933538 ~ 47934317 (-)
LOC118964894 NA coding upstream 690 48348709 ~ 48353264 (-)
LOC118964892 LOC106585477 coding upstream 30366 48375946 ~ 48387076 (-)
rab14 LOC106587009 coding upstream 187666 48535685 ~ 48540886 (-)
c5 c5 coding upstream 203601 48551620 ~ 48625435 (-)
prdm12b LOC106587007 coding upstream 277728 48625747 ~ 48630388 (-)
G515145 NA non-coding downstream 20750 48325461 ~ 48326114 (-)
G515144 NA non-coding downstream 21975 48324552 ~ 48324889 (-)
G515141 NA non-coding downstream 25404 48321053 ~ 48321460 (-)
G515128 LOC106585477 non-coding downstream 56178 48290169 ~ 48290686 (-)
G515121 NA non-coding downstream 60486 48258331 ~ 48286378 (-)
G515507 cntrl non-coding upstream 65283 48413302 ~ 48420975 (-)
G515583 cntrl non-coding upstream 140655 48488674 ~ 48490587 (-)
G515633 NA non-coding upstream 262423 48610442 ~ 48616313 (-)
G515703 NA non-coding upstream 404360 48752379 ~ 48766984 (-)
G515772 NA non-coding upstream 523972 48871991 ~ 48872300 (-)
G515139 LOC106585477 other downstream 26276 48319747 ~ 48320588 (-)
G515122 LOC106585477 other downstream 81887 48263993 ~ 48264977 (-)
G515094 LOC106585477 other downstream 369889 47974793 ~ 47976975 (-)
G514777 NA other downstream 1330368 47016162 ~ 47016496 (-)
LOC110512258 LOC106585521 other upstream 969025 49316279 ~ 49320412 (-)
LOC110512256 LOC106585521 other upstream 999451 49346858 ~ 49349193 (-)
LOC118936342 LOC106585521 other upstream 1031803 49379716 ~ 49385907 (-)

Expression


Co-expression Network