LOC118964893 (LOC106585521)


Basic Information

Item Value
gene id LOC118964893
gene name LOC106585521
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 48358853 ~ 48360349 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980321.1
CTCTGTGCATTCTGATGCAGAAAGTAGAGGATCCTCTCCAACTGAATCTCTCCAAACATCTGAAACCACTATATCTGATGTAGGCAATCTATTGAGTGGCAAGTCCTCCCCTCGGCTGTCTCCTTCTGGCACCATTATGGCAACAAGCGAGACCTCCAATGCAGCACAAATCTTGAAGGCCAACATTGATGGAGAGGAAGTGGATACCACCAGTCATTCTGGTGTAGCTCAAAACATTGTCAGGGACGATATGTCAACCAGCCCAGACATGGTCAAAGATGTCACACTTCCAACCCCATCCTCTGATAACTTGGGCAGTGATGATGACGTCACcggcctcatcagcatgttagtAATGAGAATTCTAACAGAAATCCAAACCCCAGCAGAAGATTACCCAGTTGACGCAAGTCACAAGACCTGATCCCTAAAGTTATGGAGGTcttctgtgcatggtcaggctgctctgagacaCAAGCCTATCCAGAGAACTTGAGGATTCATAAAGTCTACAGAGTCGTCTATAAAAATCTGTTGGAGGAGTTTGGCTCGGAGAAAATCCTCCAACAggccgtgtcgactcaggactcTTCATTTGATAGGATTCTTGTCAAGTCTTTGAGTGAAGCGCTTCTCCACAGATGTAATGAGGCATTGAGGGCAGCCTCAAGAACATCAGTCAAAACCACTGGGCCTAAGGCTCTTCCACTGGCTGAGGATGTGAGGGCTAGCAGCGGGAAACTATCTTTTCTACAAAGGCTGGTCAGGCTGACAAGCAACTTAAAGCTATTCAAGAAGGGGAACAAGAAGGATTCCCACCGCTCTGAATCAGAACAAGTACAGACCACTGCTGAAGATGGCATGCtGCCCAGCATAGTGCCACATGCCGCCATGTCTGCACTGCCAAAGGATCTCCCCGCCAGCTCCCAACAGGAGACGCCTCACAAACGTCCACTTCTCGTCAGGATGTTTTCTGCCATCTCCAAAGGCCTGTTCAAGCCCTTCAAACAGTCCTTAAAGACCAAGTAACTTCAGACAATTTATTAAATGTCATTCATTGC

Function

NR:

description
uncharacterized protein LOC110512141 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980321.1 True 1061 mRNA 0.48 3 48358853 48360349

Neighbor

gene id symbol gene type direction distance location
LOC110514397 LOC106585521 coding upstream 519 48357549 ~ 48358334 (+)
LOC118936658 LOC106585521 coding upstream 27407 48327868 ~ 48331446 (+)
LOC110512253 LOC106585521 coding upstream 56433 48299720 ~ 48302420 (+)
LOC118964891 LOC106585521 coding upstream 81311 48272553 ~ 48277542 (+)
LOC118964885 LOC106585521 coding upstream 108904 48244976 ~ 48249949 (+)
cntrl cntrl coding downstream 59424 48419773 ~ 48528758 (+)
LOC110526072 LOC106587002 coding downstream 588643 48948617 ~ 49037542 (+)
cmlc1 myl4 coding downstream 702101 49062450 ~ 49063259 (+)
qsox2 qsox2 coding downstream 716308 49076657 ~ 49134305 (+)
LOC110526069 LOC106586970 coding downstream 785778 49146127 ~ 49156002 (+)
G515153 NA non-coding upstream 26861 48331667 ~ 48331992 (+)
G515137 LOC106585477 non-coding upstream 39629 48318887 ~ 48319224 (+)
G515135 LOC106585477 non-coding upstream 40509 48317730 ~ 48318344 (+)
G515132 NA non-coding upstream 43326 48315260 ~ 48315527 (+)
G515127 LOC106585477 non-coding upstream 68289 48290211 ~ 48290564 (+)
G515189 LOC100135962 non-coding downstream 172028 48532377 ~ 48587888 (+)
G515190 c5 non-coding downstream 235169 48595518 ~ 48619629 (+)
G515262 NA non-coding downstream 239434 48599783 ~ 48602381 (+)
G515308 NA non-coding downstream 314535 48674884 ~ 48675558 (+)
G515346 NA non-coding downstream 364145 48724494 ~ 48724744 (+)
G515069 NA other upstream 406599 47950006 ~ 47952254 (+)
LOC118964881 LOC106585521 other upstream 842143 47425001 ~ 47519480 (+)
G514662 LOC106597055 other upstream 1029609 47303183 ~ 47329244 (+)
G514665 NA other upstream 1038803 47306438 ~ 47320050 (+)
G514499 NA other upstream 1335761 47022294 ~ 47023092 (+)
edf1 edf1 other downstream 823524 49183291 ~ 49187334 (+)
LOC110526066 LOC106584148 other downstream 873230 49233579 ~ 49260632 (+)
G516011 NA other downstream 944776 49305125 ~ 49307140 (+)

Expression


Co-expression Network