LOC118964892 (LOC106585477)


Basic Information

Item Value
gene id LOC118964892
gene name LOC106585477
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 48375946 ~ 48387076 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980319.1
AATATGCTGTCCTTTACACATGCTCTGCctacttaggcacagatctaggattagtTTACTATCACTAAATCCTAGCCTTAAAGCATTAGGAGGAGACGCTACACTGACCTTAGATCTGCTATGAGACCTATAATCTGTTGTCATGTAGGCTAAACGTAAGTCCAGTGGCGGTGCCAAGAAGACTTccgtggaggaggacagcagcattGGTGCAGccaatggagagtgattcagcagggcatgaaaaataatCTCACATTCGAGCAGCTCTCCATGCTGTGTCTGAAGATTGTTAAAGTCGTGACCCAGACAGCCCTCCGAATTCTCCTACCAGCGCTAGCTCGTATCATGGGGGTGAACCTGAGGAGTGGGGCAACCTCCCCAGAATCCCAGTGCTCTCTGACAGGGTCTGAGGATTCCTTAGGCggtctggatgagagagagaaaaggctgctgatcagtgagatgaactactggactaaggagaggaggaggaatggcaatgcaggatgccgccaaaaatccactcgcagaacctcatcaccatgctgttcgcctaagagGTCCCAGACCTCATTGCAGAGCTTGCCTGCAACTAGAGAGGCTCCCCTCATGGAGGAGCCTCTGAAGGCTCTTTTTGGGGTAACGGAAGAGAGCCTTCTGATATCCCTGGTTGAGGGTCACTCCAACCacacctcctccagctcctccgagTTGAGCTGTGCTATCGTGGGGGAGGTGGTACACCAGCTTAACTCTGGCCTCTCAGTGGCCATTGAGGCCAGCCCGGGGAGTTGCCCCCCTATTGACAGTCAGGACATAGCAGCAGGCAAGGAGGTCATTCGGGTAGCCTCGGTGCAGATCCTGGCCGAGCTACAGAGCCAAACGTCTGAGCCAGAGTGGTTAGGGTTTATCGAGCCCTTCATGGACCCTGTGACCGATGATGTGCTGGATGCCATTGTCGGCACAATGGACAAAATGGCACAGGACTTCAACATCCTATTGGATCTGGCCAAGAAGATGACAATCTTGGGGTCTAAATTTCTGACCATCTTCAATGTGACCTTGATGTTGAGTGTCCATCTGGGAAGGAAGGGACCACACACTTTCTCAAAGAGACTGGGTCCTCTACCAGTGTGGTGGCCAGAAAGATTCAGACCCTCTCTAGCCCCGACTTTCAGTCTAAAGCCCTGAAGGCGGTGAGCACCATCCTTACAAGGAAAGTCAGCAGCTCTTCTGGCATGGCTCCTTCCTCTAGGCCTTCTAGTGCTGCTCCTAGCCTTACTGAAGCCCCCCTGAATACCAGCTGcacagccctgacatctgtaacctccactgccacagtgattgttaaggcatttgtgggaggcatggagacgatagcatcatttgaaggcacatgtgaagcagttgattggccagttcctgtaaatgaccacaaaaCAGGATCTTCACAGATGATAACCTTCTCTCTAACCCACACACTCTACGGCCGTATACGAGCAAAGCTGAGGGACCTTTTAACTCTATCCACTCGAGAAGAAGGTGTGGCTAAGGATGCTTCTCTTAAGGAGTCTTCAGACACCCTGGAAAAGGCAACTGTTTCAACTGTTGAGGTCCAGTTACCCAGCACCGAACACAGTAGAGTTCCCAGAGAGAGCCAACcaataccagctctctgtctctccaatctggataccagtactcaagaagttcttagcagtgttttttccatctacaagtcagagttatcaaaagtggagagtaaatccttggccgttgtcagt
>XM_036980316.1
ggttccagttaggtgctgatgttattgatgtggttatgataagacaaatacattaaataaatgttttattcatcactaaattgttgccttggattcagaagtgttccatttatttattctctgtacCATTTTCTTTACCTTTCATCTGTTAGCGTTCCAAGAGAGCAAACAAAAAGGACTGTCATTCAGTCCAGGAACAGACTGAGATTCCCTCTACTGATGGACATTGCATAGAGCGTGAAATGGGAGGATCCCCCGGATGACCAAAATAAGGTTGTGGAGAATATGAAGGATGAAACAGAGACACATGAGACCTGCAAAGACAGGACAAGAGGCAAGGCTAAACGTAAGTCCAGTGGCGGTGCCAAGAAGACTTccgtggaggaggacagcagcattGGTGCAGccaatggagagtgattcagcagggcatgaaaaataatCTCACATTCGAGCAGCTCTCCATGCTGTGTCTGAAGATTGTTAAAGTCGTGACCCAGACAGCCCTCCGAATTCTCCTACCAGCGCTAGCTCGTATCATGGGGGTGAACCTGAGGAGTGGGGCAACCTCCCCAGAATCCCAGTGCTCTCTGACAGGGTCTGAGGATTCCTTAGGCggtctggatgagagagagaaaaggctgctgatcagtgagatgaactactggactaaggagaggaggaggaatggcaatgcaggatgccgccaaaaatccactcgcagaacctcatcaccatgctgttcgcctaagagGTCCCAGACCTCATTGCAGAGCTTGCCTGCAACTAGAGAGGCTCCCCTCATGGAGGAGCCTCTGAAGGCTCTTTTTGGGGTAACGGAAGAGAGCCTTCTGATATCCCTGGTTGAGGGTCACTCCAACCacacctcctccagctcctccgagTTGAGCTGTGCTATCGTGGGGGAGGTGGTACACCAGCTTAACTCTGGCCTCTCAGTGGCCATTGAGGCCAGCCCGGGGAGTTGCCCCCCTATTGACAGTCAGGACATAGCAGCAGGCAAGGAGGTCATTCGGGTAGCCTCGGTGCAGATCCTGGCCGAGCTACAGAGCCAAACGTCTGAGCCAGAGTGGTTAGGGTTTATCGAGCCCTTCATGGACCCTGTGACCGATGATGTGCTGGATGCCATTGTCGGCACAATGGACAAAATGGCACAGGACTTCAACATCCTATTGGATCTGGCCAAGAAGATGACAATCTTGGGGTCTAAATTTCTGACCATCTTCAATGTGACCTTGATGTTGAGTGTCCATCTGGGAAGGAAGGGACCACACACTTTCTCAAAGAGACTGGGTCCTCTACCAGTGTGGTGGCCAGAAAGATTCAGACCCTCTCTAGCCCCGACTTTCAGTCTAAAGCCCTGAAGGCGGTGAGCACCATCCTTACAAGGAAAGTCAGCAGCTCTTCTGGCATGGCTCCTTCCTCTAGGCCTTCTAGTGCTGCTCCTAGCCTTACTGAAGCCCCCCTGAATACCAGCTGcacagccctgacatctgtaacctccactgccacagtgattgttaaggcatttgtgggaggcatggagacgatagcatcatttgaaggcacatgtgaagcagttgattggccagttcctgtaaatgaccacaaaaCAGGATCTTCACAGATGATAACCTTCTCTCTAACCCACACACTCTACGGCCGTATACGAGCAAAGCTGAGGGACCTTTTAACTCTATCCACTCGAGAAGAAGGTGTGGCTAAGGATGCTTCTCTTAAGGAGTCTTCAGACACCCTGGAAAAGGCAACTGTTTCAACTGTTGAGGTCCAGTTACCCAGCACCGAACACAGTAGAGTTCCCAGAGAGAGCCAACcaataccagctctctgtctctccaatctggataccagtactcaagaagttcttagcagtgttttttccatctacaagtcagagttatcaaaagtggagagtaaatccttggccgttgtcagt
>XM_036980318.1
tttgcttttcaatgaccaaactcaggatcaacttcaagctatagcagggaCGTTCCAAGAGAGCAAACAAAAAGGACTGTCATTCAGTCCAGGAACAGACTGAGATTCCCTCTACTGATGGACATTGCATAGAGCGTGAAATGGGAGGATCCCCCGGATGACCAAAATAAGGTTGTGGAGAATATGAAGGATGAAACAGAGACACATGAGACCTGCAAAGACAGGACAAGAGGCAAGGCTAAACGTAAGTCCAGTGGCGGTGCCAAGAAGACTTccgtggaggaggacagcagcattGGTGCAGccaatggagagtgattcagcagggcatgaaaaataatCTCACATTCGAGCAGCTCTCCATGCTGTGTCTGAAGATTGTTAAAGTCGTGACCCAGACAGCCCTCCGAATTCTCCTACCAGCGCTAGCTCGTATCATGGGGGTGAACCTGAGGAGTGGGGCAACCTCCCCAGAATCCCAGTGCTCTCTGACAGGGTCTGAGGATTCCTTAGGCggtctggatgagagagagaaaaggctgctgatcagtgagatgaactactggactaaggagaggaggaggaatggcaatgcaggatgccgccaaaaatccactcgcagaacctcatcaccatgctgttcgcctaagagGTCCCAGACCTCATTGCAGAGCTTGCCTGCAACTAGAGAGGCTCCCCTCATGGAGGAGCCTCTGAAGGCTCTTTTTGGGGTAACGGAAGAGAGCCTTCTGATATCCCTGGTTGAGGGTCACTCCAACCacacctcctccagctcctccgagTTGAGCTGTGCTATCGTGGGGGAGGTGGTACACCAGCTTAACTCTGGCCTCTCAGTGGCCATTGAGGCCAGCCCGGGGAGTTGCCCCCCTATTGACAGTCAGGACATAGCAGCAGGCAAGGAGGTCATTCGGGTAGCCTCGGTGCAGATCCTGGCCGAGCTACAGAGCCAAACGTCTGAGCCAGAGTGGTTAGGGTTTATCGAGCCCTTCATGGACCCTGTGACCGATGATGTGCTGGATGCCATTGTCGGCACAATGGACAAAATGGCACAGGACTTCAACATCCTATTGGATCTGGCCAAGAAGATGACAATCTTGGGGTCTAAATTTCTGACCATCTTCAATGTGACCTTGATGTTGAGTGTCCATCTGGGAAGGAAGGGACCACACACTTTCTCAAAGAGACTGGGTCCTCTACCAGTGTGGTGGCCAGAAAGATTCAGACCCTCTCTAGCCCCGACTTTCAGTCTAAAGCCCTGAAGGCGGTGAGCACCATCCTTACAAGGAAAGTCAGCAGCTCTTCTGGCATGGCTCCTTCCTCTAGGCCTTCTAGTGCTGCTCCTAGCCTTACTGAAGCCCCCCTGAATACCAGCTGcacagccctgacatctgtaacctccactgccacagtgattgttaaggcatttgtgggaggcatggagacgatagcatcatttgaaggcacatgtgaagcagttgattggccagttcctgtaaatgaccacaaaaCAGGATCTTCACAGATGATAACCTTCTCTCTAACCCACACACTCTACGGCCGTATACGAGCAAAGCTGAGGGACCTTTTAACTCTATCCACTCGAGAAGAAGGTGTGGCTAAGGATGCTTCTCTTAAGGAGTCTTCAGACACCCTGGAAAAGGCAACTGTTTCAACTGTTGAGGTCCAGTTACCCAGCACCGAACACAGTAGAGTTCCCAGAGAGAGCCAACcaataccagctctctgtctctccaatctggataccagtactcaagaagttcttagcagtgttttttccatctacaagtcagagttatcaaaagtggagagtaaatccttggccgttgtcagt
>XM_036980317.1
attctacaatacctctttcgccatctggcttggattctctgtcgacacggccccacgccgcaccaccacgactggtctgccgacgaatactctatccgctgtgccttcaaccggcctccgtcggagggctactaactttaaacgccgtgTAGCCCGCATGCTAGCGTAATGGCGCCTTCCCTGTACCATCTACTGCTGCCTTCTGGACACTattatcacttggctacatagctgatgcctgctggactgtcgattaatcacgCGTTCCAAGAGAGCAAACAAAAAGGACTGTCATTCAGTCCAGGAACAGACTGAGATTCCCTCTACTGATGGACATTGCATAGAGCGTGAAATGGGAGGATCCCCCGGATGACCAAAATAAGGTTGTGGAGAATATGAAGGATGAAACAGAGACACATGAGACCTGCAAAGACAGGACAAGAGGCAAGGCTAAACGTAAGTCCAGTGGCGGTGCCAAGAAGACTTccgtggaggaggacagcagcattGGTGCAGccaatggagagtgattcagcagggcatgaaaaataatCTCACATTCGAGCAGCTCTCCATGCTGTGTCTGAAGATTGTTAAAGTCGTGACCCAGACAGCCCTCCGAATTCTCCTACCAGCGCTAGCTCGTATCATGGGGGTGAACCTGAGGAGTGGGGCAACCTCCCCAGAATCCCAGTGCTCTCTGACAGGGTCTGAGGATTCCTTAGGCggtctggatgagagagagaaaaggctgctgatcagtgagatgaactactggactaaggagaggaggaggaatggcaatgcaggatgccgccaaaaatccactcgcagaacctcatcaccatgctgttcgcctaagagGTCCCAGACCTCATTGCAGAGCTTGCCTGCAACTAGAGAGGCTCCCCTCATGGAGGAGCCTCTGAAGGCTCTTTTTGGGGTAACGGAAGAGAGCCTTCTGATATCCCTGGTTGAGGGTCACTCCAACCacacctcctccagctcctccgagTTGAGCTGTGCTATCGTGGGGGAGGTGGTACACCAGCTTAACTCTGGCCTCTCAGTGGCCATTGAGGCCAGCCCGGGGAGTTGCCCCCCTATTGACAGTCAGGACATAGCAGCAGGCAAGGAGGTCATTCGGGTAGCCTCGGTGCAGATCCTGGCCGAGCTACAGAGCCAAACGTCTGAGCCAGAGTGGTTAGGGTTTATCGAGCCCTTCATGGACCCTGTGACCGATGATGTGCTGGATGCCATTGTCGGCACAATGGACAAAATGGCACAGGACTTCAACATCCTATTGGATCTGGCCAAGAAGATGACAATCTTGGGGTCTAAATTTCTGACCATCTTCAATGTGACCTTGATGTTGAGTGTCCATCTGGGAAGGAAGGGACCACACACTTTCTCAAAGAGACTGGGTCCTCTACCAGTGTGGTGGCCAGAAAGATTCAGACCCTCTCTAGCCCCGACTTTCAGTCTAAAGCCCTGAAGGCGGTGAGCACCATCCTTACAAGGAAAGTCAGCAGCTCTTCTGGCATGGCTCCTTCCTCTAGGCCTTCTAGTGCTGCTCCTAGCCTTACTGAAGCCCCCCTGAATACCAGCTGcacagccctgacatctgtaacctccactgccacagtgattgttaaggcatttgtgggaggcatggagacgatagcatcatttgaaggcacatgtgaagcagttgattggccagttcctgtaaatgaccacaaaaCAGGATCTTCACAGATGATAACCTTCTCTCTAACCCACACACTCTACGGCCGTATACGAGCAAAGCTGAGGGACCTTTTAACTCTATCCACTCGAGAAGAAGGTGTGGCTAAGGATGCTTCTCTTAAGGAGTCTTCAGACACCCTGGAAAAGGCAACTGTTTCAACTGTTGAGGTCCAGTTACCCAGCACCGAACACAGTAGAGTTCCCAGAGAGAGCCAACcaataccagctctctgtctctccaatctggataccagtactcaagaagttcttagcagtgttttttccatctacaagtcagagttatcaaaagtggagagtaaatccttggccgttgtcagt
>XR_005052137.1
ttctacaatacctctttcgccatctggcttggattctctgtcgacacggccccacgccgcaccaccacgactggtctgccgacgaatactctatccgctgtgccttcaaccggcctccgtcggagggctactaactttaaacgccgtgTAGCCCGCATGCTAGCGTAATGGCGCCTTCCCTGTACCATCTACTGCTGCCTTCTGGACACTattatcacttggctacatagctgatgcctgctggactgtcgattaatcacgCGTTCCAAGAGAGCAAACAAAAAGGACTGTCATTCAGTCCAGGAACAGACTGAGATTCCCTCTACTGATGGACATTGCATAGAGCGTGAAATGGGAGGATCCCCCGGATGACCAAAATAAGGTTGTGGAGAATATGAAGGATGAAACAGAGACACATGAGACCTGCAAAGACAGGACAAGAGGCAAGGCTAAACGTAAGTCCAGTGGCGGTGCCAAGAAGACTTccgtggaggaggacagcagcattGGTGCAGagtcttctcagacacccgggtgtggtttccgggaaagggg
>TU584725
CTGTGTCTGAAGATTGTTAAAGTCGTGACCCAGACAGCCCTCCGAATTCTCCTACCAGCGCTAGCTCGTATCATGGGGGTGAACCTGAGGAGTGGGGCAACCTCCCCAGAATCCCAGTGCTCTCTGACAGGGTCTGAGGATTCCTTAGGCggtctggatgagagagagaaaaggctgctgatcagtgagatgaactactggactaaggagaggaggaggaatggcaatgcaggatgccgccaaaaatccactcgcagaacctcatcaccatgctgttcgcctaagagcgttccaagagaggaaacaaaaatgactgccattcagtccaggaccagactgagattccctctactgatggacattgcatagctccagttggataggtttctccctccatatctcagcctgtcaaaaaacgatccttgattgtcagggtcttttcagcactgatgaagccattcaggcgcttcacgaagaagaacctgtaacctgttacgctgcatgaagaactacttttgtaacagcaagacttttgacaagaggaatttctgcatgtctaccctttcaaagtctatttgatgaaataaatg

Function

NR:

description
uncharacterized protein LOC110526082

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980319.1 False 1787 mRNA 0.51 4 48378385 48381337
XM_036980316.1 False 1978 mRNA 0.50 6 48378385 48385590
XM_036980318.1 False 1876 mRNA 0.51 7 48378385 48385656
XM_036980317.1 False 2088 mRNA 0.52 7 48378385 48387076
XR_005052137.1 False 555 mRNA 0.53 5 48380873 48387075
TU584725 True 590 TUCP 0.48 3 48375946 48380306

Neighbor

gene id symbol gene type direction distance location
LOC118964894 NA coding downstream 25121 48348709 ~ 48353264 (-)
LOC118965032 LOC106585477 coding downstream 30366 48346864 ~ 48348019 (-)
LOC110512142 LOC106585477 coding downstream 59890 48292846 ~ 48318495 (-)
LOC118965031 LOC106585477 coding downstream 360531 48016304 ~ 48017854 (-)
LOC110511762 NA coding downstream 392734 47943033 ~ 47985651 (-)
rab14 LOC106587009 coding upstream 148609 48535685 ~ 48540886 (-)
c5 c5 coding upstream 164544 48551620 ~ 48625435 (-)
prdm12b LOC106587007 coding upstream 238671 48625747 ~ 48630388 (-)
LOC110526076 LOC106587004 coding upstream 285399 48672475 ~ 48750372 (-)
surf4l LOC106587003 coding upstream 512268 48899344 ~ 48944876 (-)
G515145 NA non-coding downstream 52271 48325461 ~ 48326114 (-)
G515144 NA non-coding downstream 53496 48324552 ~ 48324889 (-)
G515141 NA non-coding downstream 56925 48321053 ~ 48321460 (-)
G515128 LOC106585477 non-coding downstream 87699 48290169 ~ 48290686 (-)
G515123 NA non-coding downstream 112277 48265170 ~ 48266108 (-)
G515507 cntrl non-coding upstream 26226 48413302 ~ 48420975 (-)
G515583 cntrl non-coding upstream 101598 48488674 ~ 48490587 (-)
G515633 NA non-coding upstream 223366 48610442 ~ 48616313 (-)
G515703 NA non-coding upstream 365303 48752379 ~ 48766984 (-)
G515772 NA non-coding upstream 484915 48871991 ~ 48872300 (-)
G515139 LOC106585477 other downstream 57797 48319747 ~ 48320588 (-)
G515122 LOC106585477 other downstream 113408 48263993 ~ 48264977 (-)
G515094 LOC106585477 other downstream 401410 47974793 ~ 47976975 (-)
G514777 NA other downstream 1361889 47016162 ~ 47016496 (-)
LOC110512258 LOC106585521 other upstream 929968 49316279 ~ 49320412 (-)
LOC110512256 LOC106585521 other upstream 960394 49346858 ~ 49349193 (-)
LOC118936342 LOC106585521 other upstream 992746 49379716 ~ 49385907 (-)
G516320 LOC106585521 other upstream 1148139 49535215 ~ 49536285 (-)
G515121 NA non-coding downstream 89568 48258331 ~ 48286378 (-)

Expression


Co-expression Network