surf4l (LOC106587003)


Basic Information

Item Value
gene id surf4l
gene name LOC106587003
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 48899344 ~ 48944876 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980341.1
AACCTACTCGGACAGCTAGGTGGCTGTGTCCTTATCCTCAGTAGGAATTTTGTCCAGTATGCTTGCTTTGCATTATTTGGAATCCTTTCTTTACAGACTATTGCCTACAGCATTTTATGGGATCTTAAATTCTTGATGAGGAACCTGGCCCTGGGCGGGGGGCTCCTGCTGTTGCTAGCCGAGTCGCGTGGGGAGGGGAAGAGCATGTTTGCTGGGGTGCCGTCAATGGGAGAGCACTCGCCCAAGCAGTACATGCAGCTGGGCGGACGGGTTCTCCTGGTGCTCATGTTCATGACCCTGCTGCACTTTGACCCCAGCTTCATCTCTATTCTGCAGAACCTGGTGGGCACAGCTCTGATCGTGCTGGTGGCAATCGGCTTCAAGACCAAGCTGGCCGCCCTCACCCTGGTGTTGTGGCTGTTTGCCGTCAACGTATACTTCAATGCCTTCTGGATGGTGCCCGCCTACAAGCCCATGCACGACTTCCTCAAGTACGACTTCTTCCAGACCATGTCGGTGATCGGTGGGCTGCTACTGATTGTGGCTCTGGGGCCCGGTGGGGTGTCCATGGACGAAAAGAAGAAGTTGTGGTGAGACTCGACCCAAGTTACCAGGACCGACAGGACAGGGACCCCCCCCCACCTTACCAAACATGGCCTAAGCAGTACGcacctcctccctctacccccctcccctcagcACTGTCTCattctcagtctgtctgtctcactctccctcGCTAACTTTTCTGTGACTGTCCTCCACAGGCACCTTTACAAATGGTTTGCAGTCTTTATTTTGCTACTGTAGCTCGTCGTGACATGGCCATCTCTCGATTTGGGGATATCCAATACATTACTAATGTTTTTTGTCttttaaaacaaatatatattttagtgaCCAATTTTCAAGGTATTGTCTTTAATGGTGTATTTGTAGAATTTATATACTGTAATTCTTTCATGCTTCTTTTGCTATTTTTTTGTGCGCATCTTTTGTCTATGCTTTCAATAATGCCAGCCCTTAACTAAAGACTCAACCCACTGTTTTAGAGGACAAGTTTTACACTCTTATGTGTAAATGATGATAGCTGCTTTTGTGCTGATTTGAGTTAGCACAGAATAGATACATTACTATATTTATGGTTAGGTAGGTTTCTATGAAGGGGCAAATGCAGTACTTTCTATCAAATATTTTAAGTTGGGATAAAAAAGTACCTTTTGGCTAGTTGCATAATTTGACAGTTCAATgaactggggcggcaggtagcctagtggttagagcattgagccagtaatcgaaaggttgctagatcgaatccccgagctgacaagggaaaaatctgtcattctgcccctgaacaaggcagttaacccactcttcctaggccgtcattgtaaataagaattggttcttaactgacttgcctagttaaaataaaaagCATGTTAGCTGCTTTTTACTGTATTTGTCCACTTTCTGAGTTTCTCTGTGCCTTTTCAAATGCCTTGTAGAATCCCATGAACACCTTAAGCCATTTAATGTACAGACACTTTCACATGCGGGGATTTCTATTCTGTTCTTTATTGAAATTTTGTCACAACTATAGCATGTTAAACTATTCCATATGACAAATGTGAGTGCTGTCAATTGAGTCCAAAGTTTACAATTGGTTAATTATAGTATTCTATGTCATCCAGCACAACAGGGCCATTTAGCTTTAAAGCCCTCTATCATTGGTCTCACTCAGTGtttttccatttattaaagtatgAGAAAAATGATTTTCTATTTGTTTTTGAATATTTATAAATCATAAACAAAAGCATAAA
>XM_021606675.2
GTATACGTGGCACGCTATGGCAATTACTGCCTACAGAGGGAGCTGTGTTATGGGGCGGAGGTAACGCTTGCACTTCTTCGATGAAGAGGAGCTAGCGTCTGAAAAAACTCAAGGCGACAGGTCAGATTTTTGTCAGTTAGAATTTTAGGAAACTGCAGTGGTACCAGCAGTACCAGACTCAGAGCGTGACATGGGGCAGAATGATCTGATGAGCAATGCGGAGGACGTGGCAGACCAGTTCCTGAGAGTGACCAAACAATACCTTCCTCACGTGGCACGCCTGTGTCTGATCAGCACCTTCCTGGAGGACGGCATTCGCATGTGGTTCCAGTGGAATGAGCAGCGGGACTACATTGAGGCCACCTGGAGCTGTGGCTACTTTCTGGCCGCCTGCTTCGTGTTACTGAACCTGCTAGGACAGCTAGGTGGCTGTGTCCTTATCCTCAGTAGGAATTTTGTCCAGTATGCTTGCTTTGCATTATTTGGAATCCTTTCTTTACAGACTATTGCCTACAGCATTTTATGGGATCTTAAATTCTTGATGAGGAACCTGGCCCTGGGCGGGGGGCTCCTGCTGTTGCTAGCCGAGTCGCGTGGGGAGGGGAAGAGCATGTTTGCTGGGGTGCCGTCAATGGGAGAGCACTCGCCCAAGCAGTACATGCAGCTGGGCGGACGGGTTCTCCTGGTGCTCATGTTCATGACCCTGCTGCACTTTGACCCCAGCTTCATCTCTATTCTGCAGAACCTGGTGGGCACAGCTCTGATCGTGCTGGTGGCAATCGGCTTCAAGACCAAGCTGGCCGCCCTCACCCTGGTGTTGTGGCTGTTTGCCGTCAACGTATACTTCAATGCCTTCTGGATGGTGCCCGCCTACAAGCCCATGCACGACTTCCTCAAGTACGACTTCTTCCAGACCATGTCGGTGATCGGTGGGCTGCTACTGATTGTGGCTCTGGGGCCCGGTGGGGTGTCCATGGACGAAAAGAAGAAGTTGTGGTGAGACTCGACCCAAGTTACCAGGACCGACAGGACAGGGACCCCCCCCCACCTTACCAAACATGGCCTAAGCAGTACGcacctcctccctctacccccctcccctcagcACTGTCTCattctcagtctgtctgtctcactctccctcGCTAACTTTTCTGTGACTGTCCTCCACAGGCACCTTTACAAATGGTTTGCAGTCTTTATTTTGCTACTGTAGCTCGTCGTGACATGGCCATCTCTCGATTTGGGGATATCCAATACATTACTAATGTTTTTTGTCttttaaaacaaatatatattttagtgaCCAATTTTCAAGGTATTGTCTTTAATGGTGTATTTGTAGAATTTATATACTGTAATTCTTTCATGCTTCTTTTGCTATTTTTTTGTGCGCATCTTTTGTCTATGCTTTCAATAATGCCAGCCCTTAACTAAAGACTCAACCCACTGTTTTAGAGGACAAGTTTTACACTCTTATGTGTAAATGATGATAGCTGCTTTTGTGCTGATTTGAGTTAGCACAGAATAGATACATTACTATATTTATGGTTAGGTAGGTTTCTATGAAGGGGCAAATGCAGTACTTTCTATCAAATATTTTAAGTTGGGATAAAAAAGTACCTTTTGGCTAGTTGCATAATTTGACAGTTCAATgaactggggcggcaggtagcctagtggttagagcattgagccagtaatcgaaaggttgctagatcgaatccccgagctgacaagggaaaaatctgtcattctgcccctgaacaaggcagttaacccactcttcctaggccgtcattgtaaataagaattggttcttaactgacttgcctagttaaaataaaaagCATGTTAGCTGCTTTTTACTGTATTTGTCCACTTTCTGAGTTTCTCTGTGCCTTTTCAAATGCCTTGTAGAATCCCATGAACACCTTAAGCCATTTAATGTACAGACACTTTCACATGCGGGGATTTCTATTCTGTTCTTTATTGAAATTTTGTCACAACTATAGCATGTTAAACTATTCCATATGACAAATGTGAGTGCTGTCAATTGAGTCCAAAGTTTACAATTGGTTAATTATAGTATTCTATGTCATCCAGCACAACAGGGCCATTTAGCTTTAAAGCCCTCTATCATTGGTCTCACTCAGTGtttttccatttattaaagtatgAGAAAAATGATTTTCTATTTGTTTTTGAATATTTATAAATCATAAACAAAAGCATAAA
>XM_036980340.1
tgccaggtctcgacAGGCTCTCCGGACtggactaattggggctgattgctcaccagctgtaccAGTCCCATGAAGCTtccagaagggcagcacacagggGAGAGAGTAGGGGAAGACAGGACTCCCGTATAGTTGGGGACAGAGGTTATCTGGAGTCATTCCACGGTGCCCTGCTGAAAAATACTGCAAAGCGGGGGCATTTTGTGTACACAAGCATGAGGGAGCTGACACACCTTGCGGTTATGGAGCGCAACAATATTGTGGAACAGAAACCAGCAAGGGACACTGAAAGTTCCTGAGAGTGACCAAACAATACCTTCCTCACGTGGCACGCCTGTGTCTGATCAGCACCTTCCTGGAGGACGGCATTCGCATGTGGTTCCAGTGGAATGAGCAGCGGGACTACATTGAGGCCACCTGGAGCTGTGGCTACTTTCTGGCCGCCTGCTTCGTGTTACTGAACCTGCTAGGACAGCTAGGTGGCTGTGTCCTTATCCTCAGTAGGAATTTTGTCCAGTATGCTTGCTTTGCATTATTTGGAATCCTTTCTTTACAGACTATTGCCTACAGCATTTTATGGGATCTTAAATTCTTGATGAGGAACCTGGCCCTGGGCGGGGGGCTCCTGCTGTTGCTAGCCGAGTCGCGTGGGGAGGGGAAGAGCATGTTTGCTGGGGTGCCGTCAATGGGAGAGCACTCGCCCAAGCAGTACATGCAGCTGGGCGGACGGGTTCTCCTGGTGCTCATGTTCATGACCCTGCTGCACTTTGACCCCAGCTTCATCTCTATTCTGCAGAACCTGGTGGGCACAGCTCTGATCGTGCTGGTGGCAATCGGCTTCAAGACCAAGCTGGCCGCCCTCACCCTGGTGTTGTGGCTGTTTGCCGTCAACGTATACTTCAATGCCTTCTGGATGGTGCCCGCCTACAAGCCCATGCACGACTTCCTCAAGTACGACTTCTTCCAGACCATGTCGGTGATCGGTGGGCTGCTACTGATTGTGGCTCTGGGGCCCGGTGGGGTGTCCATGGACGAAAAGAAGAAGTTGTGGTGAGACTCGACCCAAGTTACCAGGACCGACAGGACAGGGACCCCCCCCCACCTTACCAAACATGGCCTAAGCAGTACGcacctcctccctctacccccctcccctcagcACTGTCTCattctcagtctgtctgtctcactctccctcGCTAACTTTTCTGTGACTGTCCTCCACAGGCACCTTTACAAATGGTTTGCAGTCTTTATTTTGCTACTGTAGCTCGTCGTGACATGGCCATCTCTCGATTTGGGGATATCCAATACATTACTAATGTTTTTTGTCttttaaaacaaatatatattttagtgaCCAATTTTCAAGGTATTGTCTTTAATGGTGTATTTGTAGAATTTATATACTGTAATTCTTTCATGCTTCTTTTGCTATTTTTTTGTGCGCATCTTTTGTCTATGCTTTCAATAATGCCAGCCCTTAACTAAAGACTCAACCCACTGTTTTAGAGGACAAGTTTTACACTCTTATGTGTAAATGATGATAGCTGCTTTTGTGCTGATTTGAGTTAGCACAGAATAGATACATTACTATATTTATGGTTAGGTAGGTTTCTATGAAGGGGCAAATGCAGTACTTTCTATCAAATATTTTAAGTTGGGATAAAAAAGTACCTTTTGGCTAGTTGCATAATTTGACAGTTCAATgaactggggcggcaggtagcctagtggttagagcattgagccagtaatcgaaaggttgctagatcgaatccccgagctgacaagggaaaaatctgtcattctgcccctgaacaaggcagttaacccactcttcctaggccgtcattgtaaataagaattggttcttaactgacttgcctagttaaaataaaaagCATGTTAGCTGCTTTTTACTGTATTTGTCCACTTTCTGAGTTTCTCTGTGCCTTTTCAAATGCCTTGTAGAATCCCATGAACACCTTAAGCCATTTAATGTACAGACACTTTCACATGCGGGGATTTCTATTCTGTTCTTTATTGAAATTTTGTCACAACTATAGCATGTTAAACTATTCCATATGACAAATGTGAGTGCTGTCAATTGAGTCCAAAGTTTACAATTGGTTAATTATAGTATTCTATGTCATCCAGCACAACAGGGCCATTTAGCTTTAAAGCCCTCTATCATTGGTCTCACTCAGTGtttttccatttattaaagtatgAGAAAAATGATTTTCTATTTGTTTTTGAATATTTATAAATCATAAACAAAAGCATAAA
>XM_021606676.2
AGCCCCTTGGATCAGTATACGTGGCACGCTATGGCAATTACTGCCTACAGAGGGAGCTGTGTTATGGGGCGGAGGTAACGCTTGCACTTCTTCGATGAAGAGGAGCTAGCGTCTGAAAAAACTCAAGGCGACAGGTCAGATTTTTGTCAGTTAGAATTTTAGGAAACTGCAGTGGTACCAGCAGTACCAGACTCAGAGCGTGACATGGGGCAGAATGATCTGATGAGCAATGCGGAGGACGTGGCAGACCAGTTCCTGAGAGTGACCAAACAATACCTTCCTCACGTGGCACGCCTGTGTCTGATCAGCACCTTCCTGGAGGACGGCATTCGCATGTGGTTCCAGTGGAATGAGCAGCGGGACTACATTGAGGCCACCTGGAGCTGTGGCTACTTTCTGGCCGCCTGCTTCGTGTTACTGAACCTGCTAGGACAGCTAGGTGGCTGTGTCCTTATCCTCAGTAGGAATTTTGTCCAGTATGCTTGCTTTGCATTATTTGGAATCCTTTCTTTACAGACTATTGCCTACAGCATTTTATGGGATCTTAAATTCTTGATGAGgtttttatatgaccaatcatatcgagtggttccaatgacaaATTTGACGCGAGCCCGCCCGTCCCTGGTGGCTTTCTTCAAcgaagatggctgacaaaacattacggggGAAGCAGATggactcctgaggcTGTCGTCTTGGGAAACAGTGGATGTGaagaatctagctagctgaagcatttactgcaaattgaatgtacaattgtgtaagctttggggcggcagggtagcctagtggttagagcgttggaatagtaaccaaaaggttgcaagttcgaatccgcGAGCAAACAAGTTACAGGTCTGTTGTTCTGCGCCTAAACAAGGCAGTcaaccgtcattgaaaataagaatttgttcttaacttccttgcctagttaaaaaaaattattataataataattggccaagttaaataaaggtaaaataaaagctTGCCTTGCcgtgcaatgcagctgaagtaaccaactatttacttgcttattgtgtagtggaggataaaataactgtatgcctatgtagcTGATCTGTGTAAGGACCCCAAAAtgttaggttctgaactaatattcataccaatctATGGCTATACGGCTATCAGagttgttgtatcaacttcataatttgcaaataaattcattaaaaattctacaatgtga
>TU585452
GGACtggactaattggggctgattgctcaccagctgtaccAGTCCCATGAAGCTtccagaagggcagcacacagggGAGAGAGTAGGGGAAGACAGGACTCCCGTATAGTTGGGGACAGAGGTTATCTGGAGTCATTCCACGGTGCCCTGCTGAAAAATACTGCAAAGCGGGGGCATTTTGTGTACACAAGCATGAGGGAGCTGACACACCTTGCGGTTATGGAGCGCAACAATATTGTGGAACAGAAACCAGCAAGGGACACTGAAAGGAGAGGTGCAGTACCAGCAAATATTCTGCAAGAGGAGCAAACAGTTGGTGGTTAAGAAGCCCTACACCATTATCGGCAGAGTCTTATCCAGCTGGCCATTCACCACAGACAGGAGAAGCCCATTGCCATACGCACAAAGAGTATCAGCTTCCCCAGCCTACCATTGCCAGTGTATCAAAGCCAGATGAAGGACTATGGCTGCTtttacacaggcagtccaattaagattttttttccactaattggtcttttgaccaaacAGATCAGTTctaaaaaagatctgatgtgattaagACCATTTAATGGATATCAGAATTGGCCTGCCTGTGTAACCGgtgctaattattagaatcaggtgggctagattagggttggagtgaaaacatacAGGACTGTtgcgctccaggaacagggttggatagCCCTGATGTAGAACCACCATAGCATAAatatggatattttttttatcaatctTCAAAATTTGTCTGCCCTTATGGATTCACAGAAGATCAAGTATTTAAATAAGCTTTACAGGGCTATGTAGCATCAACAAGATATCAAAataatgtttgtttatttgtcaaatgTAAAATACAGAAGAGTGTACAATATTTAATCCTAACTCAAGAGACCTGGGTATTCAAGAACAATGGTATATGGTAAAAGTAACATACTAAACAAATAGTATCAACAGtgtagtacagttcagtgtgtccaaGTATTTTTCAGGTGTAAAGACACACAAGTTCAGGGAACTGTAGTTAGAGATTGTTACAGAAGATAATGTGATTTTCCCAAAGATTTTTGCTGACATCTTGTAGATTTCAAGTCTTCTCTCATTGACGAGACAGGTGGGTGTCCACCCCAAAGTGCTGCATGTCAGAGACCTGTCTCAATCAATGAGTGAGAAGACTTGAAATAGACACGATGGCGGCGCACATATTCTTGAAGTACTTTATGgagaattattttattttaataacagcattttctaaattcaaactGACCCCTGCCACTGGACAAGGACATTTTATGAGGCTCCTTTTTCCCTGAATCGAGGATGAAGACAGCATCGCTAAGGTCGGTCAAAAATTCTCTGTGCTACACCAAACAGTACCTATCCTGGAACTCCCAGTAATGGATAGCAAAACATGTTGgttaaatcacattatctggtgtaacaatctgTAGCTAAGAGAACTGGTGATCAGCAGATGATGGGTCATGGTGAAATTGCCATTCCAAAGACACATACAGTAGTTCAGGGAAGCGGTGGTTTGTGT

Function

NR:

description
PREDICTED: surfeit locus protein 4-like

GO:

id name namespace
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980341.1 False 1832 mRNA 0.43 5 48899344 48911180
XM_021606675.2 False 2238 mRNA 0.45 6 48899344 48924373
XM_036980340.1 False 2292 mRNA 0.46 7 48899344 48944876
XM_021606676.2 False 1216 mRNA 0.44 6 48909133 48924387
TU585452 True 1552 lncRNA 0.42 3 48942079 48944853

Neighbor

gene id symbol gene type direction distance location
LOC110526076 LOC106587004 coding downstream 148972 48672475 ~ 48750372 (-)
prdm12b LOC106587007 coding downstream 268956 48625747 ~ 48630388 (-)
c5 c5 coding downstream 273909 48551620 ~ 48625435 (-)
rab14 LOC106587009 coding downstream 358458 48535685 ~ 48540886 (-)
LOC118964892 LOC106585477 coding downstream 512268 48375946 ~ 48387076 (-)
LOC110526068 LOC106586971 coding upstream 250312 49195188 ~ 49220181 (-)
serpind1 LOC106603687 coding upstream 288708 49233584 ~ 49240694 (-)
LOC118964899 LOC106585521 coding upstream 369349 49314225 ~ 49316393 (-)
LOC110512258 LOC106585521 coding upstream 371403 49316279 ~ 49320412 (-)
LOC110512256 LOC106585521 coding upstream 401982 49346858 ~ 49349193 (-)
G515786 NA non-coding downstream 2653 48895592 ~ 48896691 (-)
G515785 NA non-coding downstream 3776 48894459 ~ 48895568 (-)
G515783 NA non-coding downstream 6413 48892729 ~ 48892931 (-)
G515782 NA non-coding downstream 7609 48890934 ~ 48891735 (-)
G515772 NA non-coding downstream 27044 48871991 ~ 48872300 (-)
G516128 NA non-coding upstream 10760 48955636 ~ 48955857 (-)
G516181 NA non-coding upstream 76304 49021180 ~ 49021455 (-)
G516182 NA non-coding upstream 76675 49021551 ~ 49021782 (-)
G516183 NA non-coding upstream 100908 49045784 ~ 49063260 (-)
G516275 NA non-coding upstream 230175 49175051 ~ 49175317 (-)
G515139 LOC106585477 other downstream 578756 48319747 ~ 48320588 (-)
LOC110512142 LOC106585477 other downstream 580937 48292846 ~ 48318495 (-)
G515122 LOC106585477 other downstream 634367 48263993 ~ 48264977 (-)
LOC118936342 LOC106585521 other upstream 434946 49379716 ~ 49385907 (-)
G516320 LOC106585521 other upstream 590339 49535215 ~ 49536285 (-)
LOC110515945 LOC106585521 other upstream 678173 49622196 ~ 49624916 (-)
G515822 NA non-coding downstream 244 48941626 ~ 48941835 (-)
G515823 NA non-coding downstream 3185 48938577 ~ 48938894 (-)
G515819 NA non-coding downstream 4207 48937657 ~ 48937872 (-)

Expression


Co-expression Network