cmlc1 (myl4)


Basic Information

Item Value
gene id cmlc1
gene name myl4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 49062450 ~ 49063259 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606672.2
GCACAGTGTGCCCTGTATCACTCGCTTGTTCTCTCCTCACATCCGCACACATTGACGTGGCAGTAGGTATACTGGCAACATGGCCCCGAAAAAAGTGGAACCCAAGAAAGTAGAGCCTAAGAAACCAGAGCCCAAAGCAGAGGCCAAGGCAGAGCCAGCAAAGGCCCCTGTGCCTGAGCCTCCCAAGGAGCCTGAGGTGGACCTCAAGAGTATCATTCTAGATTTCACGCTGGACCAGATTGAGGAGTTCAAGGAGGCGTTCACCTTGTTCGATGAAACACCGACGGGCGAGATGAAGATCAGGTACGCCCAGTGCGGAGACCTAATGCGGGCCTTGGGTCATAACCCCACCAACACTGATGTGCTGAAGCTGCTGGGCAAGCCCAAGGCTGAGGAGATGAATTCCAAGCTGGTGGACTTTGAGACTTTCCTGCCCATGCTGCAGCATATCTCCCGAACCAAGGAGACAGGGACCTTTGAGGACTTTGTGGAGGGTCTGAGAGTATTCGACAAAGAGGGGAATGGCACGGTGATGGGGGCCGAGCTCAGGCACGTTTTGGCTACCCTTGGGGAGAAGCTGATGGAGAGCGAAGTGGACCAACTCATGATCGGACAAGAGGACTCAAGTGGCCATATCAATTACACCGAATTTGTCAAACACATCCTCTCTACGTGAGCTGCTCTTTCTTGAGTCACATTACAAATTCTACTTTAACATTGCCTGGCTCAAAGGACTGAATGGAACATATATTGCCCTTTCTGTCTGTATGCTGAACAATGTTGATTCCTAAATAAATGCCCATCATTCTA

Function

symbol description
myl4 Predicted to enable calcium ion binding activity. Is expressed in cephalic musculature; myotome; pectoral fin musculature; and somite. Human ortholog(s) of this gene implicated in cardiomyopathy and familial atrial fibrillation. Orthologous to human MYL4 (myosin light chain 4).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0055005 ventricular cardiac myofibril assembly biological_process
GO:0045214 sarcomere organization biological_process
GO:0003007 heart morphogenesis biological_process
GO:0060047 heart contraction biological_process
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606672.2 True 810 mRNA 0.51 1 49062450 49063259

Neighbor

gene id symbol gene type direction distance location
LOC110526072 LOC106587002 coding upstream 28360 48948617 ~ 49037542 (+)
cntrl cntrl coding upstream 533692 48419773 ~ 48528758 (+)
LOC110526080 LOC106585521 coding upstream 669443 48354613 ~ 48393007 (+)
LOC118964893 LOC106585521 coding upstream 702101 48358853 ~ 48360349 (+)
LOC110514397 LOC106585521 coding upstream 704116 48357549 ~ 48358334 (+)
qsox2 qsox2 coding downstream 13398 49076657 ~ 49134305 (+)
LOC110526069 LOC106586970 coding downstream 82868 49146127 ~ 49156002 (+)
edf1 edf1 coding downstream 120032 49183291 ~ 49187334 (+)
LOC118964897 NA coding downstream 124916 49188175 ~ 49189807 (+)
LOC110526066 LOC106584148 coding downstream 178780 49233579 ~ 49260632 (+)
G515839 NA non-coding upstream 104058 48957890 ~ 48958392 (+)
G515836 NA non-coding upstream 107029 48955109 ~ 48955421 (+)
G515821 NA non-coding upstream 120667 48940586 ~ 48941783 (+)
G515442 LOC106587003 non-coding upstream 161616 48899401 ~ 48900834 (+)
G515932 NA non-coding downstream 45087 49108346 ~ 49108615 (+)
G515897 NA non-coding downstream 98535 49161794 ~ 49162460 (+)
G515985 NA non-coding downstream 165910 49229169 ~ 49230070 (+)
G515986 NA non-coding downstream 169252 49232511 ~ 49232995 (+)
G515189 LOC100135962 other upstream 474562 48532377 ~ 48587888 (+)
G515069 NA other upstream 1110196 47950006 ~ 47952254 (+)
LOC118964881 LOC106585521 other upstream 1545740 47425001 ~ 47519480 (+)
G514662 LOC106597055 other upstream 1733206 47303183 ~ 47329244 (+)
G516011 NA other downstream 241866 49305125 ~ 49307140 (+)
LOC118964898 LOC106585477 other downstream 323255 49347319 ~ 49387212 (+)
barhl1a barhl1 other downstream 685929 49748788 ~ 49753260 (+)

Expression


Co-expression Network