LOC110526069 (LOC106586970)


Basic Information

Item Value
gene id LOC110526069
gene name LOC106586970
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 49146127 ~ 49156002 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606668.2
TGATTGTGCATAGAGAACCTCACCCTCTTCTACCACCTCAGTCTCGaatggagaaggagagaattgGAGTGCTTCTGTTCTTTCTGATGCCCTTTCAGCCGGTCCTGTCTCCAGTGAAGACCTGCTCTCATCATAATGTCCCAGCTCCTGCATGTGGAGATCCCCAACTTTGGCAGCTCTGTGCTGGAGAGTCTGAACGAGCAGCGCCTGCAGGGCCAGTACTGTGATGTGGCCGTCATGGTCAATGGCCAGTCCTTTAAGGCCCACCGCGCCGTGCTGGCCGCCAGCAGCCTCTACTTCAGAGACCTGTTCAGCGGCAGCTCTCAGGGCATGTTTGAACTACCCTCCTCGGTCACCCCGTCCTGCTTCCAGCAGATCCTCTCCTTCTGCTACACGGGCAGGCTGACCATGGCCGCCAGCGAACAGCTCGTGCTCATGTACACGGCCGGCTACCTCCAGATCCAGAACATTGTGGAGCGCAGGATGAATCTCATGCTAAAGgccaactctccacactgcgatTCCCAGACGGCCACCACCGAGGATCTGGGCTTCGAACCGTCAAGCCCCAACTACAGCCATCCGGCCCTGTTGCCAGGCGACACACTAATGGCCACTTGTAGGATTAAGCAGGAAAGATGTGAGTCCCCAATGAGTGAGGAGCACACAGCTAAGGGCCTCAAGGGCTACGCCACAAGGAGCAGTGCACAATGTTACATGAGGGCAGGAGGGAGTGGTATTGTACCCGGAGTACAGTCGTACCCTATGGCCTCTGGGGAGCGCTCTAGCCCAGGGGCCTCCAGCCTCCCAGCCACTGACAGCCCCACTTCCCACCCCAACGAGGAGGAGTTTGAAGAGGAGTTCTACGGCAGCAGCAATACAAACGGGGTTTATGGGCAGAATTATGGGCACCCAACCAACTCCTACAGCATGCAGGATAAGTTGGACGTGTTGTCCCTACCTCTGGCCACTGAGAGGCGCTGTGTGCTGATCGGCAGGGACACGATGGCGCTGCCACCCAGTCTCATCAGCCAGATTGGCTACCGCTGCCACCCCACCCTGTACACAGAAGGGGATCCCGGGGAGAAGGTGGAGCTGGTGGGAGGTTCTGGTGTATATATGACTCGTGGCCAGTTGATGAACTGTCATTTGTGTGCCGGCATTAAGCACAAAGTGCTGCTGCGTCGGCTGCTCGCCACCTTCTTTGACAGAAACACACTGGCCAATAGCTGTGGAACTGGAATTCGCTCCTCCACCAATGATCCCAGCCGAAAACCGTTGGACAACCGAGTCCTAAACACTGTCAAACTCTACTGTCAGAACTTTGCACCTAATTTCAAAGAGAGTGAGATGAATGTGATTGCAGCCGACATGTGCACAAACGCCCGGCGTGTGCGAAAGCGCTGGCTGCCCAAGATCCAGTCCATGCTCCCGGAGACCAAGGAGAGCAGCAGAAGCTCCTGCAAGGGGCAGTCCAGGGCCTGTGCGTCATCCCAGACAAGTGTGCTGTCGTCGGCCTTGCCCTTTGAAATGGACTTCAGACACCTGACGTCGTCCTACCTGACCCTAGAACAGCAGCTCTACGCCGAGAGCCGCAAAGAGACtctcctacctcacctgcagtTTGTGGGAACCACCAGGTCAGAGGAGGGGGCTGCAGCAGCAGAGCTGGCTGAGTCCGAGACAGAGCATGGGCCTGAGCGAGGAGGACGAGGAGCCCAGGCGGGCCAAGGAACTGAACGCCTCTCTGAGTGCTTGGAGAGAGCAGCTGAGGTCCCATCCCTCAGCACACAGGGTAAGGCTGGGGCCGGGGGCTCCCCCTCCTCCAAACACACAGGACAGCAGGAGGACAAGTTGCTAGAAGATGACCAGTGAGGTCCTAACATCCCTCTTCTCCACCAATCTATATATGTCTATGTATGTGTATTTAAGCTTTGGCTACTCAACTGCATGTAACATCGCAGAAATTACAGTTCAGACATGCACTTAAAAGAAAACTGATGAAAAAATGAAATGCAGTATAATAATTCcctgaaggagaagagaagaattGCTACTACTGTGGCACCGTGATGGACTCGCTGATAGATAAGGTGGGTGAACAGACATGGGGCGAATGAGGAAAAACGTTGAGTTTTTAGTTGTCGTCTGTCGTTTGTACTCTTGTAAAGcctaccctctactacaccactggTCATAATGTACGACTCACTACTTCTACCAAAAGTTCGGtaccactttattttacagtacagaaATTACCTGGTATTTTACATAGAAATAGAAATACATAGAAATTGCATTGTAAAATGCAAGTAAACAATTATAATAACCTATAACCGACATTTGTTTATTTGAGGCTCAATGCAAGTAGCACCACTCAGCACCATTTGGTACCAGGTAGTTACCAATAGTTTAAAGGTCTTTGAAGTAAGTAGCAGAAAGTACCCATTAATACCTCACAATTTCCTAGAAAATACCAAGCAATTTCTgttccttaaaataaagtgcagCAAACACTTCTTTATTGAATTTTGTTTTCTAATTGTTCTGCTTCCACCTAATTACCTCTAATGTGACATTATGCTCATCTATATAATCAACTGTTGGCACTGAATAAGGTAAACATTACCAATAACAAAATGGGGAGGCCACACAATATTGCTTCTATATTCCTTTATTTTAATCAGCTTCAAACTGTCGGTCCACTGCGATGCATTGAAGGTATAGCCCCAGTGAGATTGATCTGTTCTTTACCTTATATCCAGTACTGTTTTGATATTACTGATTGGAATTTGTTGAAAGATTCATCCACCCAGGACTCATCCATCAACATTGAGGAATATACACCATCAATCAGAGGCTTCATTAGGAAATGTGTTGTTCCCACAATATTGTTCCCACAATAGCAATCCGGACATGCCCCAACTAAAAACCCTGGATCAACAGAGATCCCCGTACCATGCTCAGAGCCCATACTGCAGCATTCAATGTCAGCAGAACGGACCCTGATGACTCGGTGGGGCGCGATGCGTACAAGGCAAGCAGTTACGAGCTCCTCATCCATTAGTGACGCAAAAAGACAGTGCAGACTCAAACTTTAATTGATGTTCGACAACCTAGACTCGCGACACGTGGCAAGgactacagactacaaaggcaAATCTAGCTGTGTGGTGCCCACCGAAGCTTCCCTCCCAGATGAGCTTAACACATTCTATGGTCGCTTCGAGGCAGACAATACCGAGCCATCCAGGAAGACACTCGCTGCTCCGGACAACCAAGTGCTTTCACTCTGAGGCTGACGTGAAGAAAACTCTCAAGAGTGAATACTCACAAAACCGCCAGACCAGTTGGCATCCCTGACCACATTCTCAGAgtgtgtgctgaccagctggTGAGCGTCTTCTCAGAcatcttcaacctgtccctggcTGTAGTCCTCACCTGCTTCAAGGAGACTACCATTGTCTCAGTGCCCACGAAAAACAAGGTGACATTCCCAAATGACTACCGACCAGTCTCACTCACCCcagtcatcatgaagtgcctcgagaggctggtcatggcccacatcaaggCCAGCATTCCAGGCACACTGGACCCACGGCAATTATcctaccgctccaacagatccatggAAGATTCCATTTCCATCGCTATTCACACGGCCCTAACACAtcaggacaagaggaacacctatgtgagaatcctgttcattgactacagttcagcattcaacactattgttccctcAAAGctcgacaccaagctcagagcacTGGGTCTGGGCAGCACcatctgcaactgggtcctggacttcctgacgggcagaccACAGGAACAACATCTCTTCTATACTAACTCTTAACACAGGGGACCCTCAGGGGTATCTCCTAggccctctgctgtactccctattcacccatgactgcgtggctttGCATGACACCAACTCCATCAAGTTTGCTCACGACACCACAATTGTAGGCCTGGGAACCAACAATGACGAGTGAGTCTATTGGGAGGTTGTAAGTAAACCGGCATTGTGGTGCTCCCAATTCAACTGTGGGAGCATGGCAGCTCTCATCACCAGGCAACAAAAAGAGCTGGCCACTTCTATACGAGAGATTGTTTGTGAGGAGATTACCTCTGCCCTCGTCTTTCAATTAAAACCGATTATTGAATCATTGGCTGTGCTCACTGCTAACGTGGATACCTATTCTAAAGTGGAAAGCCTGGAGAAGGCAACCAATGTGACAGAGGTGTGACTCCATGACCTGGAAGCAGCGCAAGCTAAGTTGGAAGGGATAATCAAACTCCTGTAAATTCAATGTGCAGGTCACAGGACTTGAAACTGGTGTGGAGGCGGGCAACCCAACTTCCTTCATGAGCAAAATCTTTTCTATGATCTGTTCGGGCGGGAGGTCCCATGTCGCTGATTAAAACAGTGAGCACTGCAGAGGTTAACTCCAACGGCTCTCACTGTATGATTGTACGGATCCACAGCTTTGAAGTCAAGCGGAGACTTGTTCACCTTGTAGTGTAATCTGGGGGTTTGACTATGCAGGGAAGAGGATCAACATCTACCCAGACTTGAGTGCCAAGATGCTAAAACACAGGGAAACCTACGACAAGGTGCGATACCAGCTACGCAAGCTAAACCTGAGATTCGGCTTCAACCACTCGACAAAACTCCTCTTGACCTTCCAGAACACCACACATGTTTCCCACTGCCAAGGAAGCTCAAGACTTCTTCAAGAAGCACATCAAACCCAACACACAACGGGACAAGCCAACAGAAGGAACCTCATGACTGGGACATTTTTTAAGGTATGCTATCCATGCACAATCACGCGGCCTAGCCTATGGCTATGATGCTGTCCTCAGCATAAGACAATGATGACACCACCTAATGTTTGGGTACAAGGAACAATAATAATATTATTGCTGAGCATTAAACTTGTTATAAGTATATTGCCTATGGTCCTGGACATTTACACAGTAATGGCACCATACCAATTAATGAGCAATGGACAATATATGGAGGTTTACACATACTGGAACTGCTTTCTTGTGGCTACAGTGTATTGAATCCCTTTGGGCAGAATATGGCAAAtaacagtatacagtgccttgcgaaagtattcggcccccttgaa

Function

NR:

description
nucleus accumbens-associated protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606668.2 True 5162 mRNA 0.49 6 49146127 49156002

Neighbor

gene id symbol gene type direction distance location
qsox2 qsox2 coding upstream 11822 49076657 ~ 49134305 (+)
cmlc1 myl4 coding upstream 82868 49062450 ~ 49063259 (+)
LOC110526072 LOC106587002 coding upstream 112037 48948617 ~ 49037542 (+)
cntrl cntrl coding upstream 617369 48419773 ~ 48528758 (+)
LOC118964893 LOC106585521 coding upstream 785778 48358853 ~ 48360349 (+)
edf1 edf1 coding downstream 27289 49183291 ~ 49187334 (+)
LOC118964897 NA coding downstream 32173 49188175 ~ 49189807 (+)
LOC110526066 LOC106584148 coding downstream 86037 49233579 ~ 49260632 (+)
LOC118964903 NA coding downstream 146663 49302665 ~ 49303356 (+)
LOC118964898 LOC106585477 coding downstream 206028 49347319 ~ 49387212 (+)
G515932 NA non-coding upstream 37512 49108346 ~ 49108615 (+)
G515839 NA non-coding upstream 187735 48957890 ~ 48958392 (+)
G515836 NA non-coding upstream 190706 48955109 ~ 48955421 (+)
G515821 NA non-coding upstream 204344 48940586 ~ 48941783 (+)
G515897 NA non-coding downstream 5792 49161794 ~ 49162460 (+)
G515985 NA non-coding downstream 73167 49229169 ~ 49230070 (+)
G515986 NA non-coding downstream 76509 49232511 ~ 49232995 (+)
G516006 NA non-coding downstream 114612 49270614 ~ 49290474 (+)
G515189 LOC100135962 other upstream 558239 48532377 ~ 48587888 (+)
G515069 NA other upstream 1193873 47950006 ~ 47952254 (+)
LOC118964881 LOC106585521 other upstream 1629417 47425001 ~ 47519480 (+)
G514665 NA other upstream 1826077 47306438 ~ 47320050 (+)
G516011 NA other downstream 149123 49305125 ~ 49307140 (+)
barhl1a barhl1 other downstream 593186 49748788 ~ 49753260 (+)

Expression


Co-expression Network