edf1 (edf1)


Basic Information

Item Value
gene id edf1
gene name edf1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 49183291 ~ 49187334 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604927.2
gcctgtcaggaagtccaggacccagttgcgcagggcggggtcgagacccagggactCAAGCTTTATGGTAAACTCAAAAAACATGGCAGAAAGTGACTGGGATACCGTGACCATACTGAGGAAGAAGGGACCAACTGTCGCACAGTCGAAGTCGAAAcagGCTGTTGCAGCAGCTCAAAGACGTGGAGAAGAACTTGATACTACTAAGAAATgggcTGCAGGACAAAACAAACAGCACGTGATCACCAAGAATACAGCAAAGCttgacagagagactgaagagcTTCAACACCAAAGAGTATCTCTGGAGGTGGGCAAGGTCATCCAACAAGGCCGGCAAAATCAGGGCCTGACGCAGAAAGACCTGGCCACTaaAATCAATGAAAAACCACAGATAATTGGAGACTACGAATCTGGAAAGGCTATCCCCAATAACCAAGTCATGGGAAAGATTGAAAGAGCAATTGGACTGAAGTTGCGTGGGAAGGACATTGGGAAACCCTTGGAGGCAGTCCCAAAGAAAAAGTGAAGACAATGCCTTGAAGCAGCTTAGCCTACAGTACTACCACCACAGCTGACAGCCTTGTCAATTCTCTGGAGCGCTAGCACATCTTAACCAGTTTATTTAATTAACTTGGGCTGCTACTTTCTTTTACTGCCCTGATTCCAGTAATGAATGTCAAGCTTGTGGGACCTGATTTAAACAATATTGCATAACTAAATTCAAATTTATTGTGGTTTTGTTTTGCATCTGGCTTTCAGCAAACCACAAGAAGAGAATTGATTTTACTGAATGGTTTTAATGTCTTCAAAACTATATTCTATACTCCCTGAGGTCTGTCTCCATGCTTGTTCTGTGGTCATTCCCTTTCAACTAGACATGGATAAGTTTGGCATTTTGGCTAAAATGTTTTAATGTAGTGTATGCTTTTCAAACATTTATGCAAGAATGCTGCTTTCATGGGCTGATATCTCCTGAAAAAGTGATTTATTCAATCTCAAGGGCCTAAAAGGTTAAACTAAATAATAAAATATGGTATATGGAACCATTGTGTCTTAATCAATCATTCTACTTCGATAGATTTTTGGACACAATGTTGCCATATACAGCTTCTGTCTTTGGTACTGCTTGTCTACCAGATGCACATTTGTTTTGTCATGTTTTTTTTGCTGGATGTGTAGCCTGCATTTTCCGTACTATATGCACATGTGCTTTGCACGGTTGCAGAATGGTTTGCAACATGGAGAAGATCATTTTCGCCCTGGTCGACCAAAGCAAATGATTATAACAGATTAAAGTTATTCTCCTATTGACCTACTGGTTACATAGGCTGGGTGAGATACTAACAGACTGGTGTGCATTACAACAATtcattactgaacaaaaataaacataaCATGGAAAAAATgtaa
>XM_021604928.2
TAGTTCATATGACGCGTTCAAAACAACAGGGAGCTCGGTCCGTCTGAGCGTTCAAACAATTGGGAGCTCGGTCCGTCTGAGCGTTCAAACAattgggaactcggaaaaaaaacTAAATCCAACTGGGAAAATCGATTTGAACGTGCATTTTTCCGAGTTCCTAGTTATTTTGAATGCGGCATTAGTATTGCTCAATGCGCTAAGGACGGTATGTGACGTCATTATAGAACTCTTGTGAACGGCGGGGTCGACTATTCGATAGAGTAAACTCAAAAAACATGGCAGAAAGTGACTGGGATACCGTGACCATACTGAGGAAGAAGGGACCAACTGTCGCACAGTCGAAGTCGAAAcagGCTGTTGCAGCAGCTCAAAGACGTGGAGAAGAACTTGATACTACTAAGAAATgggcTGCAGGACAAAACAAACAGCACGTGATCACCAAGAATACAGCAAAGCttgacagagagactgaagagcTTCAACACCAAAGAGTATCTCTGGAGGTGGGCAAGGTCATCCAACAAGGCCGGCAAAATCAGGGCCTGACGCAGAAAGACCTGGCCACTaaAATCAATGAAAAACCACAGATAATTGGAGACTACGAATCTGGAAAGGCTATCCCCAATAACCAAGTCATGGGAAAGATTGAAAGAGCAATTGGACTGAAGTTGCGTGGGAAGGACATTGGGAAACCCTTGGAGGCAGTCCCAAAGAAAAAGTGAAGACAATGCCTTGAAGCAGCTTAGCCTACAGTACTACCACCACAGCTGACAGCCTTGTCAATTCTCTGGAGCGCTAGCACATCTTAACCAGTTTATTTAATTAACTTGGGCTGCTACTTTCTTTTACTGCCCTGATTCCAGTAATGAATGTCAAGCTTGTGGGACCTGATTTAAACAATATTGCATAACTAAATTCAAATTTATTGTGGTTTTGTTTTGCATCTGGCTTTCAGCAAACCACAAGAAGAGAATTGATTTTACTGAATGGTTTTAATGTCTTCAAAACTATATTCTATACTCCCTGAGGTCTGTCTCCATGCTTGTTCTGTGGTCATTCCCTTTCAACTAGACATGGATAAGTTTGGCATTTTGGCTAAAATGTTTTAATGTAGTGTATGCTTTTCAAACATTTATGCAAGAATGCTGCTTTCATGGGCTGATATCTCCTGAAAAAGTGATTTATTCAATCTCAAGGGCCTAAAAGGTTAAACTAAATAATAAAATATGGTATATGGAACCATTGTGTCTTAATCAATCATTCTACTTCGATAGATTTTTGGACACAATGTTGCCATATACAGCTTCTGTCTTTGGTACTGCTTGTCTACCAGATGCACATTTGTTTTGTCATGTTTTTTTTGCTGGATGTGTAGCCTGCATTTTCCGTACTATATGCACATGTGCTTTGCACGGTTGCAGAATGGTTTGCAACATGGAGAAGATCATTTTCGCCCTGGTCGACCAAAGCAAATGATTATAACAGATTAAAGTTATTCTCCTATTGACCTACTGGTTACATAGGCTGGGTGAGATACTAACAGACTGGTGTGCATTACAACAATtcattactgaacaaaaataaacataaCATGGAAAAAATgtaa
>NM_001124502.1
CTTTACATGTGTATCTAAACCAACCTGTTTATACGTTGTTTCCATCAAGGTAAACTCAAAAAACATGGCAGAAAGTGACTGGGATACCGTGACCATACTGAGGAAGAAGGGACCAACTGTCGCACAGTCGAAGTCGAAAcagGCTGTTGCAGCAGCTCAAAGACGTGGAGAAGAACTTGATACTACTAAGAAATgggcTGCAGGACAAAACAAACAGCACGTGATCACCAAGAATACAGCAAAGCttgacagagagactgaagagcTTCAACACCAAAGAGTATCTCTGGAGGTGGGCAAGGTCATCCAACAAGGCCGGCAAAATCAGGGCCTGACGCAGAAAGACCTGGCCACTaaAATCAATGAAAAACCACAGATAATTGGAGACTACGAATCTGGAAAGGCTATCCCCAATAACCAAGTCATGGGAAAGATTGAAAGAGCAATTGGACTGAAGTTGCGTGGGAAGGACATTGGGAAACCCTTGGAGGCAGTCCCAAAGAAAAAGTGAAGACAATGCCTTGAAGCAGCTTAGCCTACAGTACTACCACCACAGCTGACAGCCTTGTCAATTCTCTGGAGCGCTAGCACATCTTAACCAGTTTATTTAATTAACTTGGGCTGCTACTTTCTTTTACTGCCCTGATTCCAGTAATGAATGTCAAGCTTGTGGGACCTGATTTAAACAATATTGCATAACTAAATTCAAATTTATTGTGGTTTTGTTTTGCATCTGGCTTTCAGCAAACCACAAGAAGAGAATTGATTTTA
>TU585255
CGCGTTCAAAACAACAGGGAGCTCGGTCCGTCTGAGCGTTCAAACAATTGGGAGCTCGGTCCGTCTGAGCGTTCAAACAattgggaactcggaaaaaaaacTAAATCCAACTGGGAAAATCGATTTGAACGTGCATTTTTCCGAGTTCCTAGTTATTTTGAATGCGGCATTAGTATTGCTCAATGCGCTAAGGACGGTATGTGACGTCATTATAGAACTCTTGTGAACGGCGGGGTCGACTATTCGATAGAGTACGGTACTTTCATAGTTACCACGTTATATTAGCGTGCGCTAAAGTTACCGTATAGCATACTGACTTTACATGTGTATCTAAACCAACCTGTTTATACGTTGTTTCCATCAAGGTAAACTCAAAAAACATGGCAGAAAGTGACTGGGATACCGTGACCATACTGAGGAAGAAGGGACCAACTGTCGCACAGTCGAAGTCGAAAcagGCTGTTGCAGCAGCTCAAAGACGTGGAGAAGAACTTGATACTACTAAGAAATgggcTGCAGGACAAAACAAACAGCACGTGATCACCAAGAATACAGCAAAGCttgacagagagactgaagagcTTCAACACCAAAGAGTATCTCTGGAGGTGGGCAAGGTCATCCAACAAGGCCGGCAAAATCAGGGCCTGACGCAGAAAGACCTGGCCACTaaAATCAATGAAAAACCACAGATAATTGGAGACTACGAATCTGGAAAGGCTATCCCCAATAACCAAGTCATGGGAAAGATTGAAAGAGCAATTGGACTGAAGTTGCGTGGGAAGGACATTGGGAAACCCTTGGAGGCAGTCCCAAAGAAAAAGTGAAGACAATGCCTTGAAGCAGCTTAGCCTACAGTACTACCACCACAGCTGACAGCCTTGTCAATTCTCTGGAGCGCTAGCACATCTTAACCAGTTTATTTAATTAACTTGGGCTGCTACTTTCTTTTACTGCCCTGATTCCAGTAATGAATGTCAAGCTTGTGGGACCTGATTTAAACAATATTGCATAACTAAATTCAAATTTATTGTGGTTTTGTTTTGCATCTGGCTTTCAGCAAACCACAAGAAGAGAATTGATTTTACTGAATGGTTTTAATGTCTTCAAAACTATATTCTATACTCCCTGAGGTCTGTCTCCATGCTTGTTCTGTGGTCATTCCCTTTCAACTAGACATGGATAAGTTTGGCATTTTGGCTAAAATGTTTTAATGTAGTGTATGCTTTTCAAACATTTATGCAAGAATGCTGCTTTCATGGGCTGATATCTCCTGAAAAAGTGATTTATTCAATCTCAAGGGCCTAAAAGGTTAAACTAAATAATAAAATATGGTATATGGAACCATTGTGTCTTAATCAATCATTCTACTTCGATAGATTTTTGGACACAATGTTGCCATATACAGCTTCTGTCTTTGGTACTGCTTGTCTACCAGATGCACATTTGTTTTGTCATGTTTTTTTTGCTGGATGTGTAGCCTGCATTTTCCGTACTATATGCACATGTGCTTTGCACGGTTGCAGAATGGTTTGCAACATGGAGAAGATCATTTTCGCCCTGGTCGACCAAAGCAAATGATTATAACAGATTAAAGTTATTCTCCTATTGACCTACTGGTTACATAGGCTGGGTGAGATACTAACAGACTGGTGTGCATTACAACAATtcattactgaacaaaaataaacataaCATGG

Function

symbol description
edf1 Predicted to enable DNA binding activity. Predicted to be active in nucleus. Orthologous to human EDF1 (endothelial differentiation related factor 1).

NR:

description
endothelial differentiation-related factor 1 homolog isoform X1

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604927.2 False 1413 mRNA 0.41 6 49183291 49187334
XM_021604928.2 False 1609 mRNA 0.41 6 49183861 49187334
NM_001124502.1 False 771 mRNA 0.43 5 49184189 49186710
TU585255 True 1700 TUCP 0.41 5 49183873 49187323

Neighbor

gene id symbol gene type direction distance location
LOC110526069 LOC106586970 coding upstream 27289 49146127 ~ 49156002 (+)
qsox2 qsox2 coding upstream 48986 49076657 ~ 49134305 (+)
cmlc1 myl4 coding upstream 120032 49062450 ~ 49063259 (+)
LOC110526072 LOC106587002 coding upstream 149201 48948617 ~ 49037542 (+)
cntrl cntrl coding upstream 654533 48419773 ~ 48528758 (+)
LOC118964897 NA coding downstream 841 49188175 ~ 49189807 (+)
LOC110526066 LOC106584148 coding downstream 54705 49233579 ~ 49260632 (+)
LOC118964903 NA coding downstream 115331 49302665 ~ 49303356 (+)
LOC118964898 LOC106585477 coding downstream 174696 49347319 ~ 49387212 (+)
LOC118936463 LOC106585477 coding downstream 331258 49518592 ~ 49522715 (+)
G515897 NA non-coding upstream 20831 49161794 ~ 49162460 (+)
G515932 NA non-coding upstream 74676 49108346 ~ 49108615 (+)
G515839 NA non-coding upstream 224899 48957890 ~ 48958392 (+)
G515836 NA non-coding upstream 227870 48955109 ~ 48955421 (+)
G515985 NA non-coding downstream 41835 49229169 ~ 49230070 (+)
G515986 NA non-coding downstream 45177 49232511 ~ 49232995 (+)
G516006 NA non-coding downstream 83280 49270614 ~ 49290474 (+)
G516012 NA non-coding downstream 96381 49283715 ~ 49335105 (+)
G515189 LOC100135962 other upstream 595403 48532377 ~ 48587888 (+)
G515069 NA other upstream 1231037 47950006 ~ 47952254 (+)
LOC118964881 LOC106585521 other upstream 1666581 47425001 ~ 47519480 (+)
G514665 NA other upstream 1863241 47306438 ~ 47320050 (+)
G516011 NA other downstream 117791 49305125 ~ 49307140 (+)
barhl1a barhl1 other downstream 561854 49748788 ~ 49753260 (+)
LOC118964907 NA other downstream 1533067 50719208 ~ 50743120 (+)
G514662 LOC106597055 other upstream 1854629 47303183 ~ 47329244 (+)

Expression


Co-expression Network