LOC118964897


Basic Information

Item Value
gene id LOC118964897
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 49188175 ~ 49189807 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980343.1
AATGTTTccaatatattttatttcagctcatgaaacatgtgaccaacacttcaaatgtgtttatatttttgttcagtatagttttctTGTCTGTCTCAATCTCTAGCAACATCAATACATTTAACTGGTTTTCATATAGAGTAGGGATTTCAATTCACTTGCTTGCCCTGCACGATGGCATGCTAAATTACACAAGTCCTTCAGCCGGTGTCTTCTTGTCTCTAACTACAATAGTCATAATTTTGGCCTCTATGGTGACTCTTCCCCATAGGGAACTTTTATGAACTTCTGTTTGTACCACCGCACGGTAATACAACGTACGAGTTTAAATATTGAACTCGTGGTACGCACGGCAGCCTAGTGCTGGATCCCAAATTTAGCGTTGCGGACTGCTCCATTGACAATGAATGACTTCCGCCGGAACGCAGAGTTTGACACTTCTGGTGAAACTTAAGCGTTGACTTAACTCTGGCAGCAGCGACAAATACATCTCGGCTCAGTCATGTCTGATGAATTTGTGCTGTAAAACCTGCGCCAATATTGCAAATCACTACGGAATCGCACTGAACAAACCCAGTTGATAGacgtatatgtattttttttttaaggaagCTGGATCGCTAACAATGACTGTTACGTTAGcaacaagctagctaacgttatctataTCCACAAGTACGTGTAGTCGTCAACGTTTTACACGATTGGGTGTCACAACAGTATGGTTGGTGACGGTGTCATTTACTAGCTACTGCCAACAAaaaaatctagctagctagctaacgttagctagctgcttAATCTGTCGCGCAACCCGAACCGTTTTCTTCGAGAACTACGACAACGCTACCCCAGCTCTGCCCATCCAGGCAGTCAGTGTTAACAAAACAAGAGATTGGAGCGATGACGGCAACATCATGTCTGAGAGATATCCTTTAGTCGAGAAAGCCCTATCGGAGGGCTATGCTCGGTTTAGGTTCAAGGACACGTCGCTGCTAATTTGGCAACAGCAGCAAATGGAGCTGGAACAGGGACCACCGAGTAACTACCTCAGTCGGAGTCAAAGTACGTGGTACAGTCAGTATGGAAACCAGGCAGTCGTGGTACGGGACAAACGAACTGTCACAGTGGATCCAATTGCTGACGCTGGAAGTTCCAGAATATGTTTGATTATGTGACAGTTATAGTGACACATACATTTATCCATATGCCCTACGCTTCCATATTTGTAAACTGTTTGTGCAAAAATATATGGTGCAGACTGAAGTTGATTATTTGTGTCCTGAAAGACGTCTGCCAGAAACATGTCATGACCATTCACTGGCCGACTATGTGGTGGTCAAAGTAAGCCTGTGCATGTACATTGGGGTATGGCAGTGTTAGCTAAACATGtctttctacccctgaacaaggcagttaactcactgttcctaggccgtcattgaaaataagaatttgacttgcctagttaaatgtaaaaaaataaatgatcaTTTATAGCATTTTTGCATTTCAATGCAGTATTGTCAATATATGCGCTTGTCTCTCACAAACACTTGTAACAAGACAATTGTTGCAACAGCAAGTGGAGGTTGATTATGTGCATTGTCCTGTGAAATAGAAGTCTGCACTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980343.1 True 1633 mRNA 0.42 1 49188175 49189807

Neighbor

gene id symbol gene type direction distance location
edf1 edf1 coding upstream 841 49183291 ~ 49187334 (+)
LOC110526069 LOC106586970 coding upstream 32173 49146127 ~ 49156002 (+)
qsox2 qsox2 coding upstream 53870 49076657 ~ 49134305 (+)
cmlc1 myl4 coding upstream 124916 49062450 ~ 49063259 (+)
LOC110526072 LOC106587002 coding upstream 154085 48948617 ~ 49037542 (+)
LOC110526066 LOC106584148 coding downstream 52232 49233579 ~ 49260632 (+)
LOC118964903 NA coding downstream 112858 49302665 ~ 49303356 (+)
LOC118964898 LOC106585477 coding downstream 172223 49347319 ~ 49387212 (+)
LOC118936463 LOC106585477 coding downstream 328785 49518592 ~ 49522715 (+)
LOC118965033 LOC106585477 coding downstream 363222 49553029 ~ 49566639 (+)
G515897 NA non-coding upstream 25715 49161794 ~ 49162460 (+)
G515932 NA non-coding upstream 79560 49108346 ~ 49108615 (+)
G515839 NA non-coding upstream 229783 48957890 ~ 48958392 (+)
G515836 NA non-coding upstream 232754 48955109 ~ 48955421 (+)
G515985 NA non-coding downstream 39362 49229169 ~ 49230070 (+)
G515986 NA non-coding downstream 42704 49232511 ~ 49232995 (+)
G516006 NA non-coding downstream 80807 49270614 ~ 49290474 (+)
G516012 NA non-coding downstream 93908 49283715 ~ 49335105 (+)
G515189 LOC100135962 other upstream 600287 48532377 ~ 48587888 (+)
G515069 NA other upstream 1235921 47950006 ~ 47952254 (+)
LOC118964881 LOC106585521 other upstream 1671465 47425001 ~ 47519480 (+)
G516011 NA other downstream 115318 49305125 ~ 49307140 (+)
barhl1a barhl1 other downstream 559381 49748788 ~ 49753260 (+)
LOC118964907 NA other downstream 1530594 50719208 ~ 50743120 (+)

Expression


Co-expression Network