LOC110512258 (LOC106585521)


Basic Information

Item Value
gene id LOC110512258
gene name LOC106585521
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 49316279 ~ 49320412 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980361.1
aagtgataaCAGTGTCCAGAAGGCAGCAGTAGATGGTACAGGGAAGGCGCCATTACGCTAGCACGCGGGCTACActgcgtttaaagttagtagccctccgacggaggccggttgaaggcacagcggatggagtattcgtcggcagaccagttgtggtggtgcggcggggggccgtgtcgacagagaatccaagccagatggcgaaagagGTAGtacagagagatgatgatgatcccccgagggaggggagggaggttgtTGAGGAAGAACCAGTGGCCCAGCTCAAGAAGGAGCCCAAGAAGACAGGAAAGGCGAAGAGGAAAAGTAGTGCCAAGAAGTCAGGGGAGCAGGGCACTGATACGGATGCAGGATTGAGGAATAAACACCCGGACAGAGGATCTGTTATTGAGCTCTTGGAGAAGAATGCTCTTAAGGCTGCATTCGGCCCAGGCAACAAAGATGAGATGGAGGACTGctacccaatcctcatctcattcatgcgcaatcttactgatgaGCAATGGCAAGTGATCTATAAAGGATTTAAAAAACCTATGACAAAGGAACAGCTTGCAAAATTGTGCAAGACCATTGTCAACTTCATTGCACAGACCACCCTGCAGATCCTGCTGCCGGCCCTGGCCCGCATTCTAGGGGTGACGGGCTTTTATGACAACTCTGACTCACTCAAGAGGGGTGGCAGTGCAAGATCCTTCACTGCCTTTGAGCAAAAAATActggagctcatccaggaagttaAATATTTGGCGAAGTAACTGTGGCGGCAGGGCTCTCCGACCAAGGTCTAGCACACCCTCTTCcaagagttcccagacctcaCTGAAAGTCCACCTGGGAATGCCAGaggacagtatcatcagcagtgtccaggagcaactgtcaaaatctgaccaaaTGGTGGCTGCAGGACAGCTTTCACAAATAGATAAAGTGGTTGGAACTATGCTGGAGAACATTGAGAAGATAAGCAGCGAATGTGGCGAGGAATTGGTCTATCAAGAGTCACTGCGGTCTTCCTCCTCATTGTCATTCTCAACTGCCAAATCACAGAAGACAGAGTGGGAATTTGCACTCCCATTCCTTCTGAGTTACCCGAGAGTACTGCTCAGCCCATTGTAAGATGCTCAGTCATTGACATGAGCGAATCTACTAAGCCAA
>XM_036980362.1
aagtgataaCAGTGTCCAGAAGGCAGCAGTAGATGGTACAGGGAAGGCGCCATTACGCTAGCACGCGGGCTACActgcgtttaaagttagtagccctccgacggaggccggttgaaggcacagcggatggagtattcgtcggcagaccagttgtggtggtgcggcggggggccgtgtcgacagagaatccaagccagatggcgaaagagGTAGtacagagagatgatgatgatcccccgagggaggggagggaggttgtTGAGGAAGAACCAGTGGCCCAGCTCAAGAAGGAGCCCAAGAAGACAGGAAAGGCGAAGAGGAAAAGTAGTGCCAAGAAGTCAGGGGAGCAGGGCACTGATACGGATGCAGGATTGAGGAATAAACACCCGGACAGAGGATCTGTTATTGAGCTCTTGGAGAAGAATGCTCTTAAGGCTGCATTCGGCCCAGGCAACAAAGATGAGATGGAGGACTGctacccaatcctcatctcattcatgcgcaatcttactgatgaGCAATGGCAAGTGATCTATAAAGGATTTAAAAAACCTATGACAAAGGAACAGCTTGCAAAATTGTGCAAGACCATTGTCAACTTCATTGCACAGACCACCCTGCAGATCCTGCTGCCGGCCCTGGCCCGCATTCTAGGGGTGACGGGCTTTTATGACAACTCTGACTCACTCAAGAGGGGTGGCAGTGCAAGATCCTTCACTGCCTTTGAGCAAAAAATActggagctcatccaggaagttaAATATTTGGCGAAGTAACTGTGGCGGCAGGGCTCTCCGACCAAGGTCTAGCACACCCTCTTCcaagagacctcaCTGAAAGTCCACCTGGGAATGCCAGaggacagtatcatcagcagtgtccaggagcaactgtcaaaatctgaccaaaTGGTGGCTGCAGGACAGCTTTCACAAATAGATAAAGTGGTTGGAACTATGCTGGAGAACATTGAGAAGATAAGCAGCGAATGTGGCGAGGAATTGGTCTATCAAGAGTCACTGCGGTCTTCCTCCTCATTGTCATTCTCAACTGCCAAATCACAGAAGACAGAGTGGGAATTTGCACTCCCATTCCTTCTGAGTTACCCGAGAGTACTGCTCAGCCCATTGTAAGATGCTCAGTCATTGACATGAGCGAATCTACTAAGCCAA
>TU585703
cagaatggagtaccgtgattaatcgacagtccagcaggcatcagctatgtagccaagtgataaCAGTGTCCAGAAGGCAGCAGTAGATGGTACAGGGAAGGCGCCATTACGCTAGCACGCGGGCTACActgcgtttaaagttagtagccctccgacggaggccggttgaaggcacagcggatggagtattcgtcggcagaccagttgtggtggtgcggcggggggccgtgtcgacagagaatccaagccagatggcgaaagagGTAGtacagagagatgatgatgatcccccgagggaggggagggaggttgtTGAGGAAGAACCAGTGGCCCAGCTCAAGAAGGAGCCCAAGAAGACAGGAAAGGTAAAATGGCAGGAGTGACAGGGCAACTACTAGACTAGTAACACTCAATTGTCACAATAGCTGCATTGACCTGATGTAACATGTCTATTATTTGTGATCTGgaatctattctattatattctatccaaGGCGAAGAGGAAAAGTAGTGCCAAGAAGTCAGGGGAGCAGGGCACTGATACGGATGCAGGTCATAGATTTTCCCTCTGTAGTATGTTGGTTCTCTAAACCTGCATATCATAGATAAAGGTCATGTTAGAAACTGTAGTCAGTAAGAAATGTTGCATGGATAGTTTTATTCAATAGTCCTATTGTAGCAATTTTATCAAAGTATTGTATTAAGATTAAAGCGTCTGACTTATCCTGAATTGTCCTATACGGTAATAACATATTTAGGATTGAGGAATAAACACCCGGACAGAGGATCTGTTATTGAGCTCTTGGAGAAGAATGCTCTTAAGGCTGCATTCGGCCCAGGCAACAAAGATGAGATGGAGGACTGctacccaatcctcatctcattcatgcgcaatcttactgatgaGCAATGGCAAGTGATCTATAAAGGATTTAAAAAACCTATGACAAAGGAACAGCTTGCAAAATTGTGCAAGACCATTGTCAACTTCATTGCACAGACCACCCTGCAGATCCTGCTGCCGGCCCTGGCCCGCATTCTAGGGGTGACGGGCT

Function

NR:

description
uncharacterized protein LOC110526909

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980361.1 False 1179 mRNA 0.50 7 49316279 49320358
XM_036980362.1 False 1172 mRNA 0.50 7 49316279 49320358
TU585703 True 1055 TUCP 0.46 4 49317044 49320412

Neighbor

gene id symbol gene type direction distance location
serpind1 LOC106603687 coding downstream 75585 49233584 ~ 49240694 (-)
LOC110526068 LOC106586971 coding downstream 96098 49195188 ~ 49220181 (-)
surf4l LOC106587003 coding downstream 371403 48899344 ~ 48944876 (-)
LOC110526076 LOC106587004 coding downstream 565907 48672475 ~ 48750372 (-)
prdm12b LOC106587007 coding downstream 685891 48625747 ~ 48630388 (-)
LOC110512256 LOC106585521 coding upstream 26500 49346858 ~ 49349193 (-)
LOC118936342 LOC106585521 coding upstream 59358 49379716 ~ 49385907 (-)
LOC118964902 LOC106585521 coding upstream 102071 49422429 ~ 49423820 (-)
LOC118964901 LOC106585521 coding upstream 106698 49427056 ~ 49432111 (-)
LOC118964900 LOC106585521 coding upstream 145552 49465910 ~ 49469267 (-)
G516300 NA non-coding downstream 82758 49233143 ~ 49233521 (-)
G516299 NA non-coding downstream 83229 49232522 ~ 49233050 (-)
G516298 NA non-coding downstream 87199 49228064 ~ 49229080 (-)
G516293 NA non-coding downstream 93633 49222387 ~ 49222646 (-)
G516257 NA non-coding downstream 128955 49183879 ~ 49187324 (-)
G516364 NA non-coding upstream 47641 49367999 ~ 49371049 (-)
G516369 NA non-coding upstream 81483 49401841 ~ 49419385 (-)
G516384 NA non-coding upstream 143585 49463943 ~ 49494964 (-)
G516386 NA non-coding upstream 151073 49471431 ~ 49504382 (-)
LOC118964892 LOC106585477 other downstream 935973 48375946 ~ 48387076 (-)
G515139 LOC106585477 other downstream 995691 48319747 ~ 48320588 (-)
LOC110512142 LOC106585477 other downstream 997872 48292846 ~ 48318495 (-)
G515122 LOC106585477 other downstream 1051302 48263993 ~ 48264977 (-)
G516320 LOC106585521 other upstream 214857 49535215 ~ 49536285 (-)
LOC110515945 LOC106585521 other upstream 302691 49622196 ~ 49624916 (-)
G517777 LOC106587028 other upstream 1325005 50636549 ~ 50740638 (-)
LOC118964899 LOC106585521 coding downstream 651 49314225 ~ 49316393 (-)

Expression


Co-expression Network