LOC118964902 (LOC106585521)


Basic Information

Item Value
gene id LOC118964902
gene name LOC106585521
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 49422429 ~ 49423820 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980363.1
cttgttattactgcattgtcggaactagaagcacaagcatttcgctacactcgcattaacatctgctaaccatgtgtatgtgacaaataaaatttgatttgatttgggcaGTGATGATGACGTCACcggcctcatcagcatgttagtAATGAGAATTCTAACAGAAATCCAAACCCCATCAGAAGATTACCCAGTTGACGTCACACGCAAGTCACAAGACCTGATCCCTAAAGTTATGGAGGTcttctgtgcatggtcaggctgctctgagacaCAAGCCTATCCAGAGAACTTGAGGATTCATAAAGTCTACAGAGTCGTCTATAAAAATCTGTTGGAGAAGTTTGGCTCTGAGAAAATCCTCCAACAggccgtgtcgactcaggactcTTCATTTGATAGGATTCTTGTCAAGTCTTTGAGTGAAGCGCTTCTCCACAGATGTAATGAGGCATTGAGGGCAGCCTCAAGAACATCAGTCAAAACCACCGGGCCTAAGGCTCTTCCACTGGCTGAGGATGTGAGGGCTAGCAGCGGGAAACTATCTTTTCTACAAAGGCTGGTCAGGCTGACAAGCAACTTAAAGCTATTCAAGAAGGGGAACAAGAAGGATTCCCACCGCTCTGAATCAGAACAAGTACAGACCACTGCTGAAGATGGCATGCtGCCCAGCATAGTGCCACATGCTGCCATGTCTGCACTGCCAAAGGATCTCCCCGCCAGCTCCCAACAGGAGACGCCTCACAAACGTCCACTTCTCGTCAGGATGTTTTTTGCCATCTCCAAAGGCCTGTTCAAGCCCTTCAAACAGTCATTAAAGACCAAGTAACTTCAGACAATTAATTAAACGTCATTCATTGCATTAAATTGGCCTTTGTCTTCTTATGTGCTCCCGTTAACAGACCAGATTACAATACTGGTCTTTTAAATGTTAGCAGTGATAGCAACATTaact

Function

NR:

description
uncharacterized protein LOC110513488

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980363.1 True 955 mRNA 0.45 3 49422429 49423820

Neighbor

gene id symbol gene type direction distance location
LOC118936342 LOC106585521 coding downstream 36522 49379716 ~ 49385907 (-)
LOC110512256 LOC106585521 coding downstream 73236 49346858 ~ 49349193 (-)
LOC110512258 LOC106585521 coding downstream 102071 49316279 ~ 49320412 (-)
LOC118964899 LOC106585521 coding downstream 106036 49314225 ~ 49316393 (-)
serpind1 LOC106603687 coding downstream 181735 49233584 ~ 49240694 (-)
LOC118964901 LOC106585521 coding upstream 3236 49427056 ~ 49432111 (-)
LOC118964900 LOC106585521 coding upstream 42090 49465910 ~ 49469267 (-)
LOC118964904 LOC106585521 coding upstream 72475 49496295 ~ 49499652 (-)
LOC118965034 LOC106585521 coding upstream 145252 49568244 ~ 49571133 (-)
LOC118964906 LOC106585521 coding upstream 168505 49592325 ~ 49594185 (-)
G516369 NA non-coding downstream 3044 49401841 ~ 49419385 (-)
G516364 NA non-coding downstream 51380 49367999 ~ 49371049 (-)
G516304 NA non-coding downstream 79930 49299725 ~ 49342499 (-)
G516347 NA non-coding downstream 98425 49299510 ~ 49324004 (-)
G516300 NA non-coding downstream 188908 49233143 ~ 49233521 (-)
G516384 NA non-coding upstream 40123 49463943 ~ 49494964 (-)
G516386 NA non-coding upstream 47611 49471431 ~ 49504382 (-)
G516394 NA non-coding upstream 104051 49527871 ~ 49542101 (-)
G516320 LOC106585521 non-coding upstream 111395 49535215 ~ 49536285 (-)
prdm12b LOC106587007 other downstream 792124 48625747 ~ 48630388 (-)
LOC118964892 LOC106585477 other downstream 1042123 48375946 ~ 48387076 (-)
LOC110515945 LOC106585521 other upstream 199229 49622196 ~ 49624916 (-)
G517777 LOC106587028 other upstream 1221543 50636549 ~ 50740638 (-)
G517877 NA other upstream 1487994 50911814 ~ 50922098 (-)
LOC110526143 LOC106587046 other upstream 2144158 51563139 ~ 51643817 (-)

Expression


Co-expression Network