LOC118936463 (LOC106585477)


Basic Information

Item Value
gene id LOC118936463
gene name LOC106585477
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 49518592 ~ 49522715 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980364.1
tgccgccaaaaatccactcgcagaacctcatcaccatgctgttcgcctaagagGTCCCAGACCTCATTGCAGAGCTTGCCTGCAACTAGAGAGGCTCCCCTCATGGAGGAGCCTCTGAAGGCTCTTTTTGGGGTAACGGAAGAGAGCCTTCTGATATCCCTGGTTGAGGGTCACTCCAACcccacctcctccagctcctccgagTTGAGCTGTGCTATCGTGGGGGAGGTGGTACACCAGCTTAACTCTGGCCTCTCAGTGGCCATTCAGGCCAGCCCGGGGAGTTGCCCCCCTATGGACAGTCAGGACATAGCAGCAGGCAAGGAGGTCATTCGGGTAGCCTCGGTTCAGATCCTGGCCGAGCTACAGAGCCAAACATCTGAGCCAGAGTGGGTAGGGGTTATCGAGCCCCTCATGGACCCTGTGACCGATGATGTGCTGGAGGCCATTGTCGGCACAATGGACAAAATGGCACAGGACTTCAACATCCTATTGGATCTGGCCAAGAAGATGACAATCTTGGGGTCTAAATTTCTGACCAATCTTCAATGTGACCTAGATGTTGAGTGTCCATCTGGGAAGGAAGGGACCACTCACTTTCTCAAAGAGACTGGATCCTCTACCAGTGTGGTGGCCAGAAAGATTCAGACCCTCTCTAGCCCCGACTTTCAGTCTAAAGCCCTGAAGGCGGTGAGCACCATCCTTACAAGGAAAGTCAGCAGCTCTTCTGGCATGGCTCCTTCCTCTAGGCCTTCTAGTGCTGCTCCTAGCCTTACTGAAGCCCCGCTGAATACCAGCTGcacagccctgacatctgtaacctccactgccacagtgattgttaaggcatttgtgggaggcatggagacgatagcatcatttgaagacacatgtgaagcagttgattggccagttcctgtaaatgaccacaaaaCAGGGTCTTCACAGAAGATAACCTTCTCTCTAGCCGGCACACTCTATGGCCGTATACGAGCAAAGCTGAGGGACCTTTTAACTCTAGCCGCTCGAGAAGAAGGTGTGGCTAAGGATGCTTCTCTTCGGGAGTCTTCAGACACCCTGGAAAAGGCAACTGTTTCAACTGTTGAGGTCCAGTTACCCAGCACCGAACACAGTAGAGTTCCCAGAGAGAGCCAACcaataccagctctctgtctctccaatctggataccagtactcaagaagttcttagcagtgttttttccatctacaagtcagagttatcaaaagtggagagtaaatccttagccgttgtcagttcatctgatgagtccctagaggcttgttggtttgttgatggtgtcctatcaaagcttgatgactaTACTATTTCCCAGTCACCCTCACCCAATGAAGACTTGAGCGTGAGTACTCAATATTCTCAACTGAGCTCAGAAGGGAGTGTCAGAATCACAGAGTCCTCAACTAGTCTGATTCAGAGCATTAAGAAGCTCTCTAGCAATGACTTTCAGACTCAGGCAGAAGAGGCAGTGAGTAAAGTGCTGATGAGATCCAGTCATTCCTTTATCACACAGATCAGCCATACTGGTCTTCAGAAAAGTCTGCAGGCTGGCTTATCATCTAGCTCACCATCAGAGATCCATGTCCTTTCAGAATCCATGTCCTCCATGTCCTCTGAGAATACAGCCTCTGGATTAGTGGAAACCTTTGTCAAAGGAATGGCGACTATTTTCCAGAAAAATGAGTCCACTGACACTGTGCTACTGGAAAGAAGTGGGAGAGTTTCACAGTGCTCCCACGGGGGCTCCCAACTGGATTATACTGAATTGAGTGTTAAAATATCAGAGGAGAAGCTTTGGTCAACAGCTAAGAACATCTGCGTCAGTATGAAGAACACACTTAAGGATTTCTTCACAGGGCTGAAGCCATCCGGATCCGAAAGGACAGAAATGGCTTCTTCCAAAGAGACCCTTGGGGAAATCCTGGTTGCTATCCAGAGTGAAATCTCAAACTTCGGGCGAATGAAGGATTCCAGGGAGCTCCTTCAGATCAATGATATGGTAGGAACTATGCTGAAGGAGAttgagaaaagtgaggatgacAGTGAACAAGTCTGCCAAGACATCCCTCGAACCTGTTCATCTTTATCCACTTCTTTAAATGGTCGTAGTTCCTTGTCCAGCTCTTCAAAGGGTCCTAGGTCAGAGTGTGAGTTAGAGATCaacctccctggcactcccatcccTGACAAAGTGCCTTTTGATCTGACCTGCCCCATCGTCAGGAGCTCCTGCAACGACACCAGGGACAAGATGATGGCACACACAGATGAACCCCTGCATCGTAACAGTCCAATGACTGACAGCAGCCGACCACCGAGTGCTAAAGTCTCTTTTCGATCCTCCACTCCGTCTTTCACCAGCAAGGGAACCTCTTTGGTACCAAAGGGAGAGGGGATTGACATTGAAGAGAAGGAGGTGTGTATCCCCAGCAGCTCTGGCCATCTGAGGGAGCTCTTAATCATCCCGGACATCAGCAGTGCCACTgcattcccactgcagtacttgatggactccagcaaagatgatggcatctgttttgtcaccatactggtgataaggttgctatcggagatcagaccctcagccctagatggaccctcccaacaggcagcagatctgacagaaacatctcagcaactcatcagacaagtcctgtctgagttctgtgctgCATCCAGATTATCCAGGACACAGGCATATTCCCAGAACCTGAACATCCAAAGGGTGTTCAGAGATGTACATAAAAACCTCATGGAGGAGTTTGGCTCTCATAACACCCAGGAAGCAGCTATGTCCTCCCAGGACCCTGCATTTGACAGAGTCCTGGTAAAGtccttgacccagcagctggtGCAGGGACGCAAGGAGGCGTCAAGACCAGCTTCTGCTGCAACAAACCCATCAGACCAGgctgagatggagaggggggctgagcagaaagcaagaaggagcttcctttgcttttcaatgaccaaactcaggatcaacttcaagCGTTCCAAGAGAGGAAACAAAAAGGACTGCCATTCAGTCCAGGACCAGACTGAGATTCGCTCTACTGATGGACATTGGATAGctccagttgGAGAGGGTTCTCCCTCCAAATCTCAGCCTGTCAAAAAACGATCCTTGATTGTCAGGGTCTTTTCAGCAATGATGAAGCCATTCAGGCGCTTCACCAAGAAGAACCTGTAACCTGTTACGCTGCATGAAGAACTACTTTTGTAACAGCAAGACTTTTGACAAGAGGAATTTCTGCATGTCTAACCTTTCaaagtctatttgatcaaataaatgccaatgattttacaagaa

Function

NR:

description
uncharacterized protein LOC110513487

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980364.1 True 3357 mRNA 0.49 4 49518592 49522715

Neighbor

gene id symbol gene type direction distance location
LOC118964898 LOC106585477 coding upstream 131841 49347319 ~ 49387212 (+)
LOC118964903 NA coding upstream 215236 49302665 ~ 49303356 (+)
LOC110526066 LOC106584148 coding upstream 272092 49233579 ~ 49260632 (+)
LOC118964897 NA coding upstream 328785 49188175 ~ 49189807 (+)
edf1 edf1 coding upstream 331258 49183291 ~ 49187334 (+)
LOC118965033 LOC106585477 coding downstream 30314 49553029 ~ 49566639 (+)
cfap77 cfap77 coding downstream 151426 49674141 ~ 49747277 (+)
barhl1a barhl1 coding downstream 226073 49748788 ~ 49753260 (+)
spaca9 NA coding downstream 373133 49895848 ~ 49897364 (+)
grin1b LOC106587016 coding downstream 425923 49948638 ~ 50001016 (+)
G516029 NA non-coding upstream 12509 49503532 ~ 49506083 (+)
G516050 NA non-coding upstream 106658 49366819 ~ 49411934 (+)
G516047 NA non-coding upstream 159576 49357761 ~ 49359016 (+)
G516012 NA non-coding upstream 183487 49283715 ~ 49335105 (+)
G516089 NA non-coding downstream 25266 49547981 ~ 49565332 (+)
G516093 NA non-coding downstream 35254 49557969 ~ 49567767 (+)
G516094 NA non-coding downstream 35465 49558180 ~ 49582072 (+)
G516096 NA non-coding downstream 36981 49559696 ~ 49583560 (+)
G516101 NA non-coding downstream 45381 49568096 ~ 49592137 (+)
G516011 NA other upstream 211452 49305125 ~ 49307140 (+)
LOC110526072 LOC106587002 other upstream 564301 48948617 ~ 49037542 (+)
LOC118964907 NA other downstream 1197686 50719208 ~ 50743120 (+)
LOC110526128 NA other downstream 1389113 50911697 ~ 50922106 (+)
LOC110493840 LOC106605670 other downstream 2755778 52277694 ~ 52279409 (+)
G519603 NA other downstream 3129225 52651940 ~ 52655297 (+)

Expression


Co-expression Network