LOC118964906 (LOC106585521)


Basic Information

Item Value
gene id LOC118964906
gene name LOC106585521
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 49592325 ~ 49594185 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052149.1
ttcaaacatattgtgtaatgtgaattgtcaatgatcacggccctacggatcctcataggccaattatgcaaCCGATATGGTTCATATGTATTGAAATTGATTATATGTACACATGAAGATAATTGAAAGAGTGAAATGAGAAACGTcattgtttgctaactgataGACTTTGATCATGGGGATTATAGATTGTATAACCATTCCCTGTTTGTATTCTTTCATGATTTATGATAAATAGTTACGAGCCTAAATGTCTCGCGGATGATTACTATTGACTTAATGAACTGAACTGTTGACCTCCCTAACTTGTGTTAATAATGAATGATATGATTTGATCTTTGATTATGAATCtgattggatacatgttatttgtttcctttgtgatgcagcacagactactcagtaaatataccactttatggttaaaggaattcctgcctcagtctcatccattcctctgtcacctgacacgtgaccacctgttcaccttcactgtcagtcatcctacctgtccagctactcacacagattccactaatctttcaacATCAGTCAAAACCACCGGGCCTAAGGCTCTTCCACTGGCTGAGGATGTGAGGGCTAGCAGCGGGAAACTATCTTTTCTACAAAGGCTGGTCAGGCTGACAAGCAACTTAAAGCTATTCAAGAAGGGGAACAAGAAGGATTCCCACCGCTCTGAATCAGAACAAGTACAGACCACTGCTGAAGATGGCATGCtGCCCAGCATAGTGCCACATGCTGCCATGTCTGCACTGCCAAAGGATCTCCCCGCCAGCTCCCAACAGGAGACGCCTCACAAACGTCCACTTCTCGTCAGGATGTTTTCTGCCATCTCCAAAGGCCTGTTCAAGCCCTTCAAACAGTCCTTAAAGACCAAGTAACTTCAGACAATTAATTCAACGTCATTCATTGCATTAAATTGGCCTTTGTCTTCTTATGTGCTCCCGTTAACAGACCAGATTACAATACTGGTCTTTTAAATGTTAGCAGTGATAGCAACATTaactatagtggtgtgtgtatagcccttctacacagtctgacccttcTGACACTGTGTGACATGCCCTCTGATCCAGTGATCTAGGATCTTCTGAGTGGCTTTAGGCCTGAATCTCTGCCCtcctgcccaaataaatgttttctcttCTGATATATCTGCCACTGTCAGCAGCCAGCAGGGGAAAACAGACAACGCTGTTGAGAGCTTTCTTTTCTCCCTCATGACTAAAACACTGAGCAAGGCTTTTATCTATTGCAGCATATTCCATCTTTTGATTTAACCTATTATACGGTAGAAGTACCCATTATTTCCCAACGGTTATATCACAGGAAATGTGTTATAAAAAGTAAACttacagtgcatccggaaagtattcagaccacttgactttttctacattg
>TU585701
aattcctgcctcagtctcatccattcctctgtcacctgacacgtgaccacctgttcaccttcactgtcagtcatcctacctgtccagctactcacacagattccactaatctttcaacATCAGTCAAAACCACCGGGCCTAAGGCTCTTCCACTGGCTGAGGATGTGAGGGCTAGCAGCGGGAAACTATCTTTTCTACAAAGGCTGGTCAGGCTGACAAGCAACTTAAAGGTACAGCAAACGTATTTAAATGAACAGTTGTGAGTAAACAATGCTATTCAGTGTAAAAATATAAAACCATCCGTTCATTCCAAAACCAATCATAAatgttgttgtgctggtgtggTAGTTGTGATTGTTATCATCATGAGGTTGGTCAgctgtgacattttttaaaacatgtttttctctttAAATACTTAGCTATTCAAGAAGGGGAACAAGAAGGATTCCCACCGCTCTGAATCAGAACAAGTACAGACCACTGCTGAAGATGGCATGCtGCCCAGCATAGTGCCACATGCTGCCATGTCTGCACTGCCAAAGGATCTCCCCGCCAGCTCCCAACAGGAGACGCCTCACAAACGTCCACTTCTCGTCAGGATGTTTTCTGCCATCTCCAAAGGCCTGTTCAAGCCCTTCAAACAGTCCTTAAAGACCAAGTAACTTCAGACAATTAATTCAACGTCATTCATTGCATTAAATTGGCCTTTGTCTTCTTATGTGCTCCCGTTAACAGACCAGATTACAATACTGGTCTTTTAAATGTTAGCAGTGATAGCAACATTaact
>TU585702
aattcctgcctcagtctcatccattcctctgtcacctgacacgtgaccacctgttcaccttcactgtcagtcatcctacctgtccagctactcacacagattccactaatctttcaacATCAGTCAAAACCACCGGGCCTAAGGCTCTTCCACTGGCTGAGGATGTGAGGGCTAGCAGCGGGAAACTATCTTTTCTACAAAGGCTGGTCAGGCTGACAAGCAACTTAAAGCTATTCAAGAAGGGGAACAAGAAGGATTCCCACCGCTCTGAATCAGAACAAGTACAGACCACTGCTGAAGATGGCATGCtGCCCAGCATAGTGCCACATGCTGCCATGTCTGCACTGCCAAAGGATCTCCCCGCCAGCTCCCAACAGGAGACGCCTCACAAACGTCCACTTCTCGTCAGGATGTTTTCTGCCATCTCCAAAGGCCTGTTCAAGCCCTTCAAACAGTCCTTAAAGACCAAGTAACTTCAGACAATTAATTCAACGTCATTCATTGCATTAAATTGGCCTTTGTCTTCTTATGTGCTCCCGTTAACAGACCAGATTACAATACTGGTCTTTTAAATGTTAGCAGTGATAGCAACATTaact

Function

NR:

description
uncharacterized protein LOC110512141 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052149.1 False 1425 mRNA 0.42 3 49592325 49594185
TU585701 False 791 lncRNA 0.44 2 49592722 49593756
TU585702 True 599 lncRNA 0.47 3 49592722 49593756

Neighbor

gene id symbol gene type direction distance location
LOC118965034 LOC106585521 coding downstream 21192 49568244 ~ 49571133 (-)
LOC118964904 LOC106585521 coding downstream 92673 49496295 ~ 49499652 (-)
LOC118964900 LOC106585521 coding downstream 123058 49465910 ~ 49469267 (-)
LOC118964901 LOC106585521 coding downstream 160214 49427056 ~ 49432111 (-)
LOC118964902 LOC106585521 coding downstream 168505 49422429 ~ 49423820 (-)
LOC118964905 LOC106585521 coding upstream 179 49594364 ~ 49600187 (-)
LOC110515945 LOC106585521 coding upstream 28011 49622196 ~ 49624916 (-)
ddx31 ddx31 coding upstream 165444 49759629 ~ 49813236 (-)
ak8 ak8 coding upstream 232104 49826289 ~ 49896317 (-)
tsc1a tsc1 coding upstream 303240 49897425 ~ 49928616 (-)
G516401 NA non-coding downstream 3188 49565107 ~ 49589137 (-)
G516394 NA non-coding downstream 50224 49527871 ~ 49542101 (-)
G516320 LOC106585521 non-coding downstream 56565 49535215 ~ 49536285 (-)
G516386 NA non-coding downstream 87943 49471431 ~ 49504382 (-)
G516452 NA non-coding upstream 77774 49671959 ~ 49672168 (-)
G516456 NA non-coding upstream 78895 49673080 ~ 49673379 (-)
G517400 NA non-coding upstream 345693 49939878 ~ 49940117 (-)
G517425 NA non-coding upstream 387774 49981959 ~ 49982548 (-)
LOC118936342 LOC106585521 other downstream 211503 49379716 ~ 49385907 (-)
LOC110512256 LOC106585521 other downstream 243189 49346858 ~ 49349193 (-)
LOC110512258 LOC106585521 other downstream 271913 49316279 ~ 49320412 (-)
prdm12b LOC106587007 other downstream 962020 48625747 ~ 48630388 (-)
G517777 LOC106587028 other upstream 1051178 50636549 ~ 50740638 (-)
G517877 NA other upstream 1317629 50911814 ~ 50922098 (-)
LOC110526143 LOC106587046 other upstream 1973793 51563139 ~ 51643817 (-)
G520661 LOC106587056 other upstream 3548030 53142215 ~ 53162922 (-)

Expression


Co-expression Network