LOC118964905 (LOC106585521)


Basic Information

Item Value
gene id LOC118964905
gene name LOC106585521
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 49594364 ~ 49600187 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980372.1
CAATGGCAAGTGATCTATAAAGGATTTAAAAAACCTATGACAAAGGAACAGCTTGCAAAATTGTGCAAGACCATTGTCAACTTCATTGCACAGACCACCCTGCAGATCCTGCTGCCGGCCCTGGCCCGCATTCTAGGGGTGACGGGCTTTTATGACAACGCTGACTCACTCAAGAGGGGTGGCAGTGCAAGATCCTTCACTGCCTTTGAGCAGAAAAGACTAgagctcatccaggaagttaAATATTTGGCGAAGTAACTGTGGCGGCAGGGCTCTCCGACCAAGGTCTAGCACACCCTCTTCCAAGAGttcccagacctcaCTGAAAGTCCACCTGGGAATGCCAGaggacagtatcatcagcagtgtccaggagcaactgtcAAAATCTGAACAAATGGTGGATGCAGGACAGCTTTCACAAATAGATAAAGTGGTTGGAACTATGCTGGAGAACATTGAGAAGATAAGCAGCGAATGTGGCGAGGAATTGGTCTATCAAGAGTCACTGCGGTCTTCCTCCTCGTTTTCATTCTCAACTGCCAAATCACAGAAGACAGAGTGGGAATTTGCACTCCCATTCCTTCTGAGTTACCCGAGAGTACTGCTCAGCCCATTGTAAGATGCTCAGTCATTGACATGAGCGAATCTACTAAGCCAAAAACAATGGTGTGTGATGCCAGAACAAGCATGTTTGCCATAGCCGATACCATCATGAAAAAGGTATATCCAGAGGCAGAAGGGCAGGTTACATCTCACCCTGATCTAACAGATCCAATAGCTAGACTGGAGGAGCTCATATCTCAGGgtaggattggtgctctctcCCATGATCTCAGTCACCAAGTCAACCGCATAATTTCCGATagcaacttgacccctctgggactgacagtggcggctggaaagagtgcatctgataccatcctttcgaagctgaagaggaatgacaaggTGGGGAAGCCCACAACTTACGAGCTGGTTCAGCTGTTTGTAGAGGAGTCTGTTAAGTGCCTCCTGCTTCCTAGTTTTGTGCCCTATTCAActtcaatgagtttggctcagggGGCCAAGGTGTTGGCTAGAGTGTCTGAAGATAGAATTTcatgctcttcttcttcttcatcagtaTTTAGTGACAGTCAGTCTCTTTACCAAAGTTATGGTAAGCCAGGTCATGTACTCTGTGGATTCTGATGCAGAAAGTAGAGGATCCTCTCCAACTGAATCTCTCCAAACATCTGAACCCACTATATCTGATGTAGGCAATCTATTGAGTGGCAAGTCCTCCCCTCGGCTGTCTCCTTCTGGCACCATTATGGCAACAAGCGAGACCTCCAATGCAGCACAAATCTTGAAGGCCAACATTGATGGAGAGGAAGTGGATACCACCAGTCATTCTGGTGTAGCTCAAAACATTGTCAGGGACGATATGTCAACCAGCCCAGACATGGTCAAAGATGTCACACTTCCAACCCCATCCTCTGATAACTTGGGCAGTGATGATGACTTCACcggcctcatcagcatgttagtAATGAGAATTCTAACAGAAATCCAAACCCCAGCAGAAGATTACCCAGTTGACGTCACACGCAAGTCACAAGACCTGATCCCTAAAGTTATGGAGGTcttctgtgcatggtcaggctgctctgagacaCAAGCCTATCCAGAGAACTTGAGGATTCATAAAGTCTACAGAGTAGTCTATAAAAATCTGTTGGAGGAGTTTGACTTGGAGAAAATCCTCCAACAggccgtgtcgactcaggactcTTCATTTGATAGGATTCTTGTCAAGTCTTTGAGTGAAGCGCTTCTCCACAGATGTAATGAGGCATTGAGGGCAGCCTCAAGAACGGAGCGACGcctggtgaagaatcctgagcttgCAGAAGTTCATAACCGAGAGATTCATAACCTTGTGAAGGCAGGCTTGTCCCAACCAGAGAACGAGTGGCCGACAGCCCCCAGGCGTACGGCCCCTCCGCAACCAACTGAAGCTTATGAGTTAAGGAGGTCCGCCCAATGCTACAGCATTTCTACGGAACCAACAACGGCTCTCCCTGACCTAACACAATCCCAAACACTGCCGGATCTGATCACTGCCACAAACCAGACCTCAGATGGGGTGGCTTCTATACCTACCTCCCTCGCGGCAGAGACACTACTCCAGCAAGCACAAGCAGTTAGCTTCCCTGAGGAGTTAAAAGCTCTGAAAGCCGGTAGGGAAGTGGCTAAGGACAGCCGTCTTCTCTCTCTTGCCCCAGAATATGATCCAATCCTTGGAGTGATCAGAGTCGGAGGGAGGCTGCGCCAAGCAGAGGTTTTGGACCCAGATGCTATCCACCCAATTATCATTGACTCCAAACCCTTGGGATATCTCTCTGCAGACATCGCTGACCCCGATCCGGTTACACCGAATATGCTCTTGATGGGACGCCGAGATGCGTCACTTCCTCAAGCCATGTATGCTGATACCAACCTCGTAGGCAGACGCCGGTGGCGACACAGCAAAATCTTAGCTGACCATTTTTGGGCCCGATTCATTCGGGATTACCTACCAAGTCTACAGCACAGAGGGAAATGGCGGAGAGAAATGGCCAGCCTGGAAACTGGccaagtagtaatgatggtggaccCTCAGCTGCCTCGAGCCTCCTGGCCGGTGGGCCGTATAACTAAGACTATGCCTGGGACCGATGGTCGTGTTAGATCAGTGAAGAACCGGACATATATCCGGCCAGTTGCCCGACTAATTCCTCTCCCTGAGATGACAGAGGACGGGGAGCAATGAGCCTTTTTTGAGGAGTGTGGAATTTAACAAATTTCCGGGGTGGCTGTAGAAAAGGCCcattgccatttactcagctggACCAGGGGCGCtctaattaggtcaggtggaaatgtccgacagatctcaactccataaaaggaggaaattgccatcgcctg
>XM_036980373.1
CAATGGCAAGTGATCTATAAAGGATTTAAAAAACCTATGACAAAGGAACAGCTTGCAAAATTGTGCAAGACCATTGTCAACTTCATTGCACAGACCACCCTGCAGATCCTGCTGCCGGCCCTGGCCCGCATTCTAGGGGTGACGGGCTTTTATGACAACGCTGACTCACTCAAGAGGGGTGGCAGTGCAAGATCCTTCACTGCCTTTGAGCAGAAAAGACTAgagctcatccaggaagttaAATATTTGGCGAAGTAACTGTGGCGGCAGGGCTCTCCGACCAAGGTCTAGCACACCCTCTTCCAAGAGacctcaCTGAAAGTCCACCTGGGAATGCCAGaggacagtatcatcagcagtgtccaggagcaactgtcAAAATCTGAACAAATGGTGGATGCAGGACAGCTTTCACAAATAGATAAAGTGGTTGGAACTATGCTGGAGAACATTGAGAAGATAAGCAGCGAATGTGGCGAGGAATTGGTCTATCAAGAGTCACTGCGGTCTTCCTCCTCGTTTTCATTCTCAACTGCCAAATCACAGAAGACAGAGTGGGAATTTGCACTCCCATTCCTTCTGAGTTACCCGAGAGTACTGCTCAGCCCATTGTAAGATGCTCAGTCATTGACATGAGCGAATCTACTAAGCCAAAAACAATGGTGTGTGATGCCAGAACAAGCATGTTTGCCATAGCCGATACCATCATGAAAAAGGTATATCCAGAGGCAGAAGGGCAGGTTACATCTCACCCTGATCTAACAGATCCAATAGCTAGACTGGAGGAGCTCATATCTCAGGgtaggattggtgctctctcCCATGATCTCAGTCACCAAGTCAACCGCATAATTTCCGATagcaacttgacccctctgggactgacagtggcggctggaaagagtgcatctgataccatcctttcgaagctgaagaggaatgacaaggTGGGGAAGCCCACAACTTACGAGCTGGTTCAGCTGTTTGTAGAGGAGTCTGTTAAGTGCCTCCTGCTTCCTAGTTTTGTGCCCTATTCAActtcaatgagtttggctcagggGGCCAAGGTGTTGGCTAGAGTGTCTGAAGATAGAATTTcatgctcttcttcttcttcatcagtaTTTAGTGACAGTCAGTCTCTTTACCAAAGTTATGGTAAGCCAGGTCATGTACTCTGTGGATTCTGATGCAGAAAGTAGAGGATCCTCTCCAACTGAATCTCTCCAAACATCTGAACCCACTATATCTGATGTAGGCAATCTATTGAGTGGCAAGTCCTCCCCTCGGCTGTCTCCTTCTGGCACCATTATGGCAACAAGCGAGACCTCCAATGCAGCACAAATCTTGAAGGCCAACATTGATGGAGAGGAAGTGGATACCACCAGTCATTCTGGTGTAGCTCAAAACATTGTCAGGGACGATATGTCAACCAGCCCAGACATGGTCAAAGATGTCACACTTCCAACCCCATCCTCTGATAACTTGGGCAGTGATGATGACTTCACcggcctcatcagcatgttagtAATGAGAATTCTAACAGAAATCCAAACCCCAGCAGAAGATTACCCAGTTGACGTCACACGCAAGTCACAAGACCTGATCCCTAAAGTTATGGAGGTcttctgtgcatggtcaggctgctctgagacaCAAGCCTATCCAGAGAACTTGAGGATTCATAAAGTCTACAGAGTAGTCTATAAAAATCTGTTGGAGGAGTTTGACTTGGAGAAAATCCTCCAACAggccgtgtcgactcaggactcTTCATTTGATAGGATTCTTGTCAAGTCTTTGAGTGAAGCGCTTCTCCACAGATGTAATGAGGCATTGAGGGCAGCCTCAAGAACGGAGCGACGcctggtgaagaatcctgagcttgCAGAAGTTCATAACCGAGAGATTCATAACCTTGTGAAGGCAGGCTTGTCCCAACCAGAGAACGAGTGGCCGACAGCCCCCAGGCGTACGGCCCCTCCGCAACCAACTGAAGCTTATGAGTTAAGGAGGTCCGCCCAATGCTACAGCATTTCTACGGAACCAACAACGGCTCTCCCTGACCTAACACAATCCCAAACACTGCCGGATCTGATCACTGCCACAAACCAGACCTCAGATGGGGTGGCTTCTATACCTACCTCCCTCGCGGCAGAGACACTACTCCAGCAAGCACAAGCAGTTAGCTTCCCTGAGGAGTTAAAAGCTCTGAAAGCCGGTAGGGAAGTGGCTAAGGACAGCCGTCTTCTCTCTCTTGCCCCAGAATATGATCCAATCCTTGGAGTGATCAGAGTCGGAGGGAGGCTGCGCCAAGCAGAGGTTTTGGACCCAGATGCTATCCACCCAATTATCATTGACTCCAAACCCTTGGGATATCTCTCTGCAGACATCGCTGACCCCGATCCGGTTACACCGAATATGCTCTTGATGGGACGCCGAGATGCGTCACTTCCTCAAGCCATGTATGCTGATACCAACCTCGTAGGCAGACGCCGGTGGCGACACAGCAAAATCTTAGCTGACCATTTTTGGGCCCGATTCATTCGGGATTACCTACCAAGTCTACAGCACAGAGGGAAATGGCGGAGAGAAATGGCCAGCCTGGAAACTGGccaagtagtaatgatggtggaccCTCAGCTGCCTCGAGCCTCCTGGCCGGTGGGCCGTATAACTAAGACTATGCCTGGGACCGATGGTCGTGTTAGATCAGTGAAGAACCGGACATATATCCGGCCAGTTGCCCGACTAATTCCTCTCCCTGAGATGACAGAGGACGGGGAGCAATGAGCCTTTTTTGAGGAGTGTGGAATTTAACAAATTTCCGGGGTGGCTGTAGAAAAGGCCcattgccatttactcagctggACCAGGGGCGCtctaattaggtcaggtggaaatgtccgacagatctcaactccataaaaggaggaaattgccatcgcctg
>XM_036980374.1
TGGATGAAGAAAATGTAGGTTAAATGACACTAAATATTTGGGAATGTAACTAAGGAAAACGTCATTTAAGATAACATAGGCTATTGCAAAACAAATGTCTAATTCTCTCTATTAAGTCAATCACCAGTTTAGCTAtgatatggctgtagctctatGATGTCCTTTGCAAGAATCTAATCTGACATTGACATGAAATTCCTATGTCCTTCAGGTAGtacagagagatgatgatgatcccccgagggaggggagggaggttgtTGAGGAAGAACCAGTGGCCCAGCTCAAGAAGGAGCCCAAGAAGACAGGAAAGATGACAAAGGAACAGCTTGCAAAATTGTGCAAGACCATTGTCAACTTCATTGCACAGACCACCCTGCAGATCCTGCTGCCGGCCCTGGCCCGCATTCTAGGGGTGACGGGCTTTTATGACAACGCTGACTCACTCAAGAGGGGTGGCAGTGCAAGATCCTTCACTGCCTTTGAGCAGAAAAGACTAgagctcatccaggaagttaAATATTTGGCGAAGTAACTGTGGCGGCAGGGCTCTCCGACCAAGGTCTAGCACACCCTCTTCCAAGAGttcccagacctcaCTGAAAGTCCACCTGGGAATGCCAGaggacagtatcatcagcagtgtccaggagcaactgtcAAAATCTGAACAAATGGTGGATGCAGGACAGCTTTCACAAATAGATAAAGTGGTTGGAACTATGCTGGAGAACATTGAGAAGATAAGCAGCGAATGTGGCGAGGAATTGGTCTATCAAGAGTCACTGCGGTCTTCCTCCTCGTTTTCATTCTCAACTGCCAAATCACAGAAGACAGAGTGGGAATTTGCACTCCCATTCCTTCTGAGTTACCCGAGAGTACTGCTCAGCCCATTGTAAGATGCTCAGTCATTGACATGAGCGAATCTACTAAGCCAAAAACAATGGTGTGTGATGCCAGAACAAGCATGTTTGCCATAGCCGATACCATCATGAAAAAGGTATATCCAGAGGCAGAAGGGCAGGTTACATCTCACCCTGATCTAACAGATCCAATAGCTAGACTGGAGGAGCTCATATCTCAGGgtaggattggtgctctctcCCATGATCTCAGTCACCAAGTCAACCGCATAATTTCCGATagcaacttgacccctctgggactgacagtggcggctggaaagagtgcatctgataccatcctttcgaagctgaagaggaatgacaaggTGGGGAAGCCCACAACTTACGAGCTGGTTCAGCTGTTTGTAGAGGAGTCTGTTAAGTGCCTCCTGCTTCCTAGTTTTGTGCCCTATTCAActtcaatgagtttggctcagggGGCCAAGGTGTTGGCTAGAGTGTCTGAAGATAGAATTTcatgctcttcttcttcttcatcagtaTTTAGTGACAGTCAGTCTCTTTACCAAAGTTATGGTAAGCCAGGTCATGTACTCTGTGGATTCTGATGCAGAAAGTAGAGGATCCTCTCCAACTGAATCTCTCCAAACATCTGAACCCACTATATCTGATGTAGGCAATCTATTGAGTGGCAAGTCCTCCCCTCGGCTGTCTCCTTCTGGCACCATTATGGCAACAAGCGAGACCTCCAATGCAGCACAAATCTTGAAGGCCAACATTGATGGAGAGGAAGTGGATACCACCAGTCATTCTGGTGTAGCTCAAAACATTGTCAGGGACGATATGTCAACCAGCCCAGACATGGTCAAAGATGTCACACTTCCAACCCCATCCTCTGATAACTTGGGCAGTGATGATGACTTCACcggcctcatcagcatgttagtAATGAGAATTCTAACAGAAATCCAAACCCCAGCAGAAGATTACCCAGTTGACGTCACACGCAAGTCACAAGACCTGATCCCTAAAGTTATGGAGGTcttctgtgcatggtcaggctgctctgagacaCAAGCCTATCCAGAGAACTTGAGGATTCATAAAGTCTACAGAGTAGTCTATAAAAATCTGTTGGAGGAGTTTGACTTGGAGAAAATCCTCCAACAggccgtgtcgactcaggactcTTCATTTGATAGGATTCTTGTCAAGTCTTTGAGTGAAGCGCTTCTCCACAGATGTAATGAGGCATTGAGGGCAGCCTCAAGAACGGAGCGACGcctggtgaagaatcctgagcttgCAGAAGTTCATAACCGAGAGATTCATAACCTTGTGAAGGCAGGCTTGTCCCAACCAGAGAACGAGTGGCCGACAGCCCCCAGGCGTACGGCCCCTCCGCAACCAACTGAAGCTTATGAGTTAAGGAGGTCCGCCCAATGCTACAGCATTTCTACGGAACCAACAACGGCTCTCCCTGACCTAACACAATCCCAAACACTGCCGGATCTGATCACTGCCACAAACCAGACCTCAGATGGGGTGGCTTCTATACCTACCTCCCTCGCGGCAGAGACACTACTCCAGCAAGCACAAGCAGTTAGCTTCCCTGAGGAGTTAAAAGCTCTGAAAGCCGGTAGGGAAGTGGCTAAGGACAGCCGTCTTCTCTCTCTTGCCCCAGAATATGATCCAATCCTTGGAGTGATCAGAGTCGGAGGGAGGCTGCGCCAAGCAGAGGTTTTGGACCCAGATGCTATCCACCCAATTATCATTGACTCCAAACCCTTGGGATATCTCTCTGCAGACATCGCTGACCCCGATCCGGTTACACCGAATATGCTCTTGATGGGACGCCGAGATGCGTCACTTCCTCAAGCCATGTATGCTGATACCAACCTCGTAGGCAGACGCCGGTGGCGACACAGCAAAATCTTAGCTGACCATTTTTGGGCCCGATTCATTCGGGATTACCTACCAAGTCTACAGCACAGAGGGAAATGGCGGAGAGAAATGGCCAGCCTGGAAACTGGccaagtagtaatgatggtggaccCTCAGCTGCCTCGAGCCTCCTGGCCGGTGGGCCGTATAACTAAGACTATGCCTGGGACCGATGGTCGTGTTAGATCAGTGAAGAACCGGACATATATCCGGCCAGTTGCCCGACTAATTCCTCTCCCTGAGATGACAGAGGACGGGGAGCAATGAGCCTTTTTTGAGGAGTGTGGAATTTAACAAATTTCCGGGGTGGCTGTAGAAAAGGCCcattgccatttactcagctggACCAGGGGCGCtctaattaggtcaggtggaaatgtccgacagatctcaactccataaaaggaggaaattgccatcgcctg
>TU585808
attgggctctagccgtgtatgagtggggttcgggagaacagctgagtaggccgggaggtgggcctcagggatagcttcggtactggatgCCACGAtaatacagagagatgatgatgatcccccgagggaggggagggaggttgtTGAGGAAGAACCAGTGGCCCAGCTCAAGAAGGAGCCCAAGAAGACAGGAAAGGCGAAGAGGAAAAGTAGTGCCAAGAAGTCAGGGGAGCAGGGCACTGATACGGATGCAGGATTGAGGAATAAACACCCGGACAGAGGATCTGTTATTGAGCTCTTGGAGAAGAATGCTCTTAAGGCTGCATTCGGTCCAGGCAACAAAGTAGAGATGGAG
>TU585809
attgggctctagccgtgtatgagtggggttcgggagaacagctgagtaggccgggaggtgggcctcagggatagcttcggtactggatgCCACGAtaatacagagagatgatgatgatcccccgagggaggggagggaggttgtTGAGGAAGAACCAGTGGCCCAGCTCAAGAAGGAGCCCAAGAAGACAGGAAAGGCGAAGAGGAAAAGTAGTGCCAAGAAGTCAGGGGAGCAGGGCACTGATACGGATGCAGGTCATAGATTTTCCCTCTGTAGTAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980372.1 False 2958 mRNA 0.49 3 49594364 49597823
XM_036980373.1 False 2951 mRNA 0.49 3 49594364 49597823
XM_036980374.1 False 3235 mRNA 0.49 3 49594364 49598770
TU585808 False 355 lncRNA 0.54 4 49597964 49600187
TU585809 True 279 lncRNA 0.54 3 49598246 49600187

Neighbor

gene id symbol gene type direction distance location
LOC118964906 LOC106585521 coding downstream 179 49592325 ~ 49594185 (-)
LOC118965034 LOC106585521 coding downstream 23231 49568244 ~ 49571133 (-)
LOC118964904 LOC106585521 coding downstream 94712 49496295 ~ 49499652 (-)
LOC118964900 LOC106585521 coding downstream 125097 49465910 ~ 49469267 (-)
LOC118964901 LOC106585521 coding downstream 162253 49427056 ~ 49432111 (-)
LOC110515945 LOC106585521 coding upstream 23426 49622196 ~ 49624916 (-)
ddx31 ddx31 coding upstream 160859 49759629 ~ 49813236 (-)
ak8 ak8 coding upstream 227519 49826289 ~ 49896317 (-)
tsc1a tsc1 coding upstream 298655 49897425 ~ 49928616 (-)
dok2 dok2 coding upstream 457450 50056220 ~ 50070250 (-)
G516401 NA non-coding downstream 5227 49565107 ~ 49589137 (-)
G516394 NA non-coding downstream 52263 49527871 ~ 49542101 (-)
G516320 LOC106585521 non-coding downstream 58604 49535215 ~ 49536285 (-)
G516452 NA non-coding upstream 73189 49671959 ~ 49672168 (-)
G516456 NA non-coding upstream 74310 49673080 ~ 49673379 (-)
G517400 NA non-coding upstream 341108 49939878 ~ 49940117 (-)
G517425 NA non-coding upstream 383189 49981959 ~ 49982548 (-)
G517426 NA non-coding upstream 384409 49983179 ~ 49985947 (-)
LOC118936342 LOC106585521 other downstream 213542 49379716 ~ 49385907 (-)
LOC110512256 LOC106585521 other downstream 245228 49346858 ~ 49349193 (-)
LOC110512258 LOC106585521 other downstream 273952 49316279 ~ 49320412 (-)
prdm12b LOC106587007 other downstream 964059 48625747 ~ 48630388 (-)
G517777 LOC106587028 other upstream 1046593 50636549 ~ 50740638 (-)
G517877 NA other upstream 1313044 50911814 ~ 50922098 (-)
LOC110526143 LOC106587046 other upstream 1969208 51563139 ~ 51643817 (-)
G520661 LOC106587056 other upstream 3543445 53142215 ~ 53162922 (-)

Expression


Co-expression Network