LOC110515945 (LOC106585521)


Basic Information

Item Value
gene id LOC110515945
gene name LOC106585521
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 49622196 ~ 49624916 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052150.1
TGGCAGGAGTGACAGGGCAACTACTAGACTAGTAACACTCAATTGTCACAATAGCTGCATTGACCTGATGTAACATGTCTATTATTTGTGATCTGgaatctattctattatattctatccaaGGTGAAGAGGAAAAGTAGTGCCAAGAAGTCAGGGGAGCAGGGCACTGATACGGATGCAGGTCATAGATTTTCCCTCTGTAGTATGTTGGTTCTCTAAACCTGCATATCATAGATAAAGGTCATGTTAGAAACTGTAGTCAGTAAGAAATGTTGCATGGATAGTTTTATTCAATAGTCCTATTGTAGCAATTTTATCAAAGTTTTGTATTAAGAGAAAAGCGTCTGACTTATCCTGAATTGTCCTATATGGTAATAACATATTTAGGATTGAGGAATAAACACCCGGACAGAGGATCTGTTATTGAGCTCTTGGAGAAGAATGCTCTTAAGGCTGCATTCGGCCCAGGCAACAAAGATGAGATGGAGGACTGctacccaatcctcatctcattcatgcgcaatcttactgatgaGCAATGGCAAGTGATCTATAAAGGATTTAAAAAACCTATGACAAAGGAACAGCTTGCAAAATTGTGCAAGACCATTGTCAACTTCATTGCACAGACCACCCTGCAGATCCTGCTGCCGGCCCTGGCCCGCATTCTAGGGGTGACGGGCTTTTATGACAACGCTGACTCACTCAAGAGGGGTGGCAGTGCAAGATCCTTCACTGCCTTTGAGCAGAAAAGActggagctcatccaggaagttaAATATTTGGCGAAGTAACTGTGGCGGCAGGGCTCTCCGACCAAGGTCTAGCACACCCTCTTCcaagagttcccagacctcaCTGAAAGTCCACCTGGGAATGCCAGaggacagtatcatcagcagtgtccaggagcaactgtcaaaatctgaccaaaTGGTGGCTGCAGGACAGCTTTCACAAATAGATAAAGTGGTTGGAACTATGCTGGAGAACATTGAGAAGATAAGCAGCGAATGTGGCGAGGAATTGGTCTATCAAGAGTCACTGCGGtcttcctcctcgttgtcattctcaactgccaaatcacagaagacagagtgggaatttgcactccctggcactcccattcCTTCTGAGTTACCCGAGAGTACTGCTCAGCCCATTGTAAGATGTTCAGTCATTGACATGAGCGAATCTACTAAGCCAAAAACAATGGTGTGTGATGCCAGAACAAGCATGTTTGCCA
>XR_005052152.1
TGGCAGGAGTGACAGGGCAACTACTAGACTAGTAACACTCAATTGTCACAATAGCTGCATTGACCTGATGTAACATGTCTATTATTTGTGATCTGgaatctattctattatattctatccaaGGTGAAGAGGAAAAGTAGTGCCAAGAAGTCAGGGGAGCAGGGCACTGATACGGATGCAGGTCATAGATTTTCCCTCTGTAGTATGTTGGTTCTCTAAACCTGCATATCATAGATAAAGGTCATGTTAGAAACTGTAGTCAGTAAGAAATGTTGCATGGATAGTTTTATTCAATAGTCCTATTGTAGCAATTTTATCAAAGTTTTGTATTAAGAGAAAAGCGTCTGACTTATCCTGAATTGTCCTATATGGTAATAACATATTTAGGATTGAGGAATAAACACCCGGACAGAGGATCTGTTATTGAGCTCTTGGAGAAGAATGCTCTTAAGGCTGCATTCGGCCCAGGCAACAAAGATGAGATGGAGGACTGctacccaatcctcatctcattcatgcgcaatcttactgatgaGCAATGGCAAGTGATCTATAAAGGATTTAAAAAACCTATGACAAAGGAACAGCTTGCAAAATTGTGCAAGACCATTGTCAACTTCATTGCACAGACCACCCTGCAGATCCTGCTGCCGGCCCTGGCCCGCATTCTAGGGGTGACGGGCTTTTATGACAACGCTGACTCACTCAAGAGGGGTGGCAGTGCAAGATCCTTCACTGCCTTTGAGCAGAAAAGActggagctcatccaggaagttaAATATTTGGCGAAGTAACTGTGGCGGCAGGGCTCTCCGACCAAGGTCTAGCACACCCTCTTCcaagagacctcaCTGAAAGTCCACCTGGGAATGCCAGaggacagtatcatcagcagtgtccaggagcaactgtcaaaatctgaccaaaTGGTGGCTGCAGGACAGCTTTCACAAATAGATAAAGTGGTTGGAACTATGCTGGAGAACATTGAGAAGATAAGCAGCGAATGTGGCGAGGAATTGGTCTATCAAGAGTCACTGCGGtcttcctcctcgttgtcattctcaactgccaaatcacagaagacagagtgggaatttgcactccctggcactcccattcCTTCTGAGTTACCCGAGAGTACTGCTCAGCCCATTGTAAGATGTTCAGTCATTGACATGAGCGAATCTACTAAGCCAAAAACAATGGTGTGTGATGCCAGAACAAGCATGTTTGCCA
>XR_005052151.1
cctgaagtgtacactctcGTTCGCTTCTTCCTACAAATCTAAAATCATTGCattggtggaggcatgggctagagaggaatatgctaccaaatagcaccttattccctaatgtaggcctacttttaaggaatgcactataaggaatagatcaATCAACTGGCTCACTAAATGGGGTACCGAAATATATCCAAAAGAGGTCGACACGAAATTAGACTAGGTTTATTTCTGTTTTGACCTGCTGAGTCGCAGTGCTTAGTGAACAGATTTCAATGTGGGCCTAGCTGTATCGAAAACGGTTGATGGGGAAAGTGTGTAATCTGATCAATATATTTCCCCCCCAATATTAATGAGAGAATGGGAATGTGCATAAAGGTCTAACATTCCATGACGTGGTATGAAGTTCTTAAttcgtcagtggctgcaatattgTCCTCAGTAAACTCAACATGAGTGAAAACAACACAGACAAGGACAAGTTTTTCGAGATATAAAAAATACTGTATGCTATTATGGATGAAGAAAAGGTAGGTTAAATGACACGAAATATTTGGGAATGTAACTAAGGAAAACGTCATTTAAGATAACATAGGCTATTGCAAAACAAATGTCTAATTCTCTCTATTAAGTCAATCACCAGTTTAGCTctgatatggctgtagctctatGATGTCCTTTGCAAGAATCTAATCTGACATTGACATGAAATTCCTATGTCCTTCAGGTAGtacagagagatgatgatgatcccCAGAGGGAGTTGAGGGGGGTTGTTGAGGAAGAACCAGTGGCCCAGCTCAAGAAGGAGCCCAAGAAGACAGGAAAGGTGAAGAGGAAAAGTAGTGCCAAGAAGTCAGGGGAGCAGGGCACTGATACGGATGCAGGATTGAGGAATAAACACCCGGACAGAGGATCTGTTATTGAGCTCTTGGAGAAGAATGCTCTTAAGGCTGCATTCGGCCCAGGCAACAAAGATGAGATGGAGGACTGctacccaatcctcatctcattcatgcgcaatcttactgatgaGCAATGGCAAGTGATCTATAAAGGATTTAAAAAACCTATGACAAAGGAACAGCTTGCAAAATTGTGCAAGACCATTGTCAACTTCATTGCACAGACCACCCTGCAGATCCTGCTGCCGGCCCTGGCCCGCATTCTAGGGGTGACGGGCTTTTATGACAACGCTGACTCACTCAAGAGGGGTGGCAGTGCAAGATCCTTCACTGCCTTTGAGCAGAAAAGActggagctcatccaggaagttaAATATTTGGCGAAGTAACTGTGGCGGCAGGGCTCTCCGACCAAGGTCTAGCACACCCTCTTCcaagagttcccagacctcaCTGAAAGTCCACCTGGGAATGCCAGaggacagtatcatcagcagtgtccaggagcaactgtcaaaatctgaccaaaTGGTGGCTGCAGGACAGCTTTCACAAATAGATAAAGTGGTTGGAACTATGCTGGAGAACATTGAGAAGATAAGCAGCGAATGTGGCGAGGAATTGGTCTATCAAGAGTCACTGCGGtcttcctcctcgttgtcattctcaactgccaaatcacagaagacagagtgggaatttgcactccctggcactcccattcCTTCTGAGTTACCCGAGAGTACTGCTCAGCCCATTGTAAGATGTTCAGTCATTGACATGAGCGAATCTACTAAGCCAAAAACAATGGTGTGTGATGCCAGAACAAGCATGTTTGCCA
>TU585710
CTGACTTATCCTGAATTGTCCTATATGGTAATAACATATTTAGGATTGAGGAATAAACACCCGGACAGAGGATCTGTTATTGAGCTCTTGGAGAAGAATGCTCTTAAGGCTGCATTCGGCCCAGGCAACAAAGATGAGATGGAGGACTGctacccaatcctcatctcattcatgcgcaatcttactgatgaGCAATGGCAAGTGATCTATAAAGGATTTAAAAAACCTATGACAAAGGAACAGCTTGCAAAATTGTGCAAGACCATTGTCAACTTCATTGCACAGACCACCCTGCAGATCCTGCTGCCGGCCCTGGCCCGCATTCTAGGGGTGACGGGCTTTTATGACAACGCTGACTC

Function

NR:

description
uncharacterized protein LOC110526909

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052150.1 False 1246 mRNA 0.45 4 49622196 49624087
XR_005052152.1 False 1239 mRNA 0.44 4 49622196 49624087
XR_005052151.1 False 1740 mRNA 0.44 6 49622196 49624916
TU585710 True 359 TUCP 0.45 3 49623049 49623743

Neighbor

gene id symbol gene type direction distance location
LOC118964905 LOC106585521 coding downstream 23426 49594364 ~ 49600187 (-)
LOC118964906 LOC106585521 coding downstream 28011 49592325 ~ 49594185 (-)
LOC118965034 LOC106585521 coding downstream 51063 49568244 ~ 49571133 (-)
LOC118964904 LOC106585521 coding downstream 122544 49496295 ~ 49499652 (-)
LOC118964900 LOC106585521 coding downstream 152929 49465910 ~ 49469267 (-)
ddx31 ddx31 coding upstream 134713 49759629 ~ 49813236 (-)
ak8 ak8 coding upstream 201373 49826289 ~ 49896317 (-)
tsc1a tsc1 coding upstream 272509 49897425 ~ 49928616 (-)
dok2 dok2 coding upstream 431304 50056220 ~ 50070250 (-)
nudt18 nudt18 coding upstream 688218 50313134 ~ 50323182 (-)
G516401 NA non-coding downstream 33059 49565107 ~ 49589137 (-)
G516394 NA non-coding downstream 80095 49527871 ~ 49542101 (-)
G516452 NA non-coding upstream 47043 49671959 ~ 49672168 (-)
G516456 NA non-coding upstream 48164 49673080 ~ 49673379 (-)
G517400 NA non-coding upstream 314962 49939878 ~ 49940117 (-)
G517425 NA non-coding upstream 357043 49981959 ~ 49982548 (-)
G517426 NA non-coding upstream 358263 49983179 ~ 49985947 (-)
G516320 LOC106585521 other downstream 85911 49535215 ~ 49536285 (-)
LOC118936342 LOC106585521 other downstream 241374 49379716 ~ 49385907 (-)
LOC110512256 LOC106585521 other downstream 273060 49346858 ~ 49349193 (-)
LOC110512258 LOC106585521 other downstream 301784 49316279 ~ 49320412 (-)
prdm12b LOC106587007 other downstream 991891 48625747 ~ 48630388 (-)
G517777 LOC106587028 other upstream 1020447 50636549 ~ 50740638 (-)
G517877 NA other upstream 1286898 50911814 ~ 50922098 (-)
LOC110526143 LOC106587046 other upstream 1943062 51563139 ~ 51643817 (-)
G520661 LOC106587056 other upstream 3517299 53142215 ~ 53162922 (-)
G521438 NA other upstream 4126200 53751116 ~ 53751623 (-)

Expression


Co-expression Network